acsl4b (acsl4b,LOC107747809,LOC107687654,LOC107597230,LOC107732603,LOC107680372,LOC107592357)


Basic Information

Item Value
gene id acsl4b
gene name acsl4b,LOC107747809,LOC107687654,LOC107597230,LOC107732603,LOC107680372,LOC107592357
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11223954 ~ 11232994 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240692.1
GTTCGCTAGAACTAAGATTGTACAAGAGACATCCAATCAGCCAAGAGAACCAGAgacggagacagagagagtgagaaaaggGAAGCCCGAACCTCCTGTTGCAGTTGGCCGTCTGTctgagaaaggaaaagaactgCTGTgcacagtttttatttgaagGTCATGTTGCCCCAGTGTGAGAGAGCACGGAGTAAAAGTGGTCGTCCAGAAGGGCCGTATCGGGCGGTAGAAAGTGCAGATGCTCTCGCTACACAGGACTTTGAAGGCGTGGACACGCTGGACAAACTTTTTGCACATGCTGTGAAGAGATTTAGCAATGCACCTTGTCTTGGCACCAGAGAGGTCCTaagtgaagaagaagaaaaacaaccaAATGGGAAGATCTTTAAGAAGttgGTCCAGGGGGACTACAGCTGGATGACCTATGAAGAGGTCAACCAAGCAGTGGATTCTTTTGGCAGTGGTCTGGCAGCTTTGGGACAGCAACCACGCAATACCATTGCCATCTTTTGTGAGACACGGGCAGAATGGATGATCACAGCACAGACCTGCTTCAGACGCAACTTCCCATtggtAACGCTGTATGCAACTCTGGGTGAAGATGCTGTAGCCTTTGGGCTGAATCAGTGTGGAGCCACTCATCTCATCACCAGCACAGAGCTGCTGCGGACCAAACTTAAGaacGTTTTGAGTGCAGTTTCAGCGCTGCAGCATGTTATCTATGCAGGCAGCGGTGAAGTTTGTCATGCTGATTACCCACAGTCTCTCACCATGCACAGCATGCAGGAAGTAATTGAGCTTGGAGCAAAGCCAGAGAACTtaaGCAAAGAGTATGAGAAGCCTACGGCAACTGATCTGGCGGTGGTGATGTACACCAGCGGGTCTACAGGGAAGCCTAAAGGAGTGAAGATGCAACACAGTAATCTGATTGCAGGAATGGCTGGGCAGTGCCAGCGGATCCCGGACTTGGGGTCCCAGGACTCTTATATAGCTTACCTCCCACTGGCACATGTTCTGGAGCTGACAGCAGAAATATCATGTGTGTCATATGGCTGCAGGCTTGGATACTCctccccacacacactcacagaccaGTCCAGTAAAATAAAGATGGGTGGTAAGGGAGATTGCTCTGTGCTTAAACCCACCCTGATAGCGGCAGTACCGGAGATCATGGATCGTATCTGTAAGAATGTTAATGGGAAGTTAAGAGACATGTCAGTGATTCAAAGGACTCTGTTTAAAGTGGGATACAACTATAAGCTGCAGAAGGTCTCACAAGGAGCCGATTCTCCAGTGTGTAACATGTTGTTTTTCAAGCGTGTGAATTTGTTGCTGGGAGGGTGTGTACGTCTGATGTTGAGCGGAGGGGCTCCACTTTCTGCTTCCACGCAGAGATTTATGAACGTGTGTTTCTGCCCTATCGCCGTGGGTTATGGCCTTACAGAGACGTGCGGAGCGGGAACTATCTCAGAATtttCTGATTACAGTACAGGACGGGTTGGAGCTCCCCTCATTTGCTCTGAAATTAAACTGCGAGACTGGCCTGAGGGTGGATACACCAGTCAGGACAAGCCACACCCACGAGGGGAGATTCTGATTGGTGGACCGAATGTTGCCATGGGATACTTTGGGAGTGAGGGGGAGGGAGAAAATGACAACTTCTGGGTGGATGAGGCAGGGCAGCGCTGGTTTTGTACTGGAGATGTCGGGGAAGTTCATCCAGACGGTTGTTTGCAGATTGTGGATCGCAAGAAGGACCTGGTAAAGCTGCAGGCAGGTGAATACGTATCTTTGGGGAAGGTAGAATCTGCCCTGAAAAACAGCCCCCTCATTGATAACATTTGCGTCTATGCCAGCAGTGATCAGAACTACTTGATCAGCTTTGTGGTGCCCAATCAGAAGCAAATGACTGAACTGGCAAAAAAGAACGGGATAGAGGGTGAGTGGGAGGAGATTTGTAACCACACCAAGATGGAGGAGGAAGTACTAAAAGTCATCAAAGAGATCGCAGTCACGAgtaaACTGGAAAGGTTTGAAgttccacagaagatctgttTAAGTTCTGAGGCTTGGACTCCAGAAACAGGGCTGGTGACGGATGCCTTCAAACTAAAGAGGAAAGAGctgaaaaatcattataaaaaagaCATTGAGAGGTTATATGGAGCTAAATGATGGACAACTAATcataattataatcataatcatagtATTGcatcaaaatgcagttttactaTGATCCTGTCTCACTCCATACACTAGACATGAAAAGTCTGCCGATTGGGATTCATGCACATGTAAAGTCACTGCCAGTCCTGCTGATCTCAGTAGAAACACCATTCTTCTCCCTGCTGGATGTAAATGGTCATTACTTCCTCTGTGAGTAAGTACTGCGAGGCATAGATTTATTTAATGGCAGTAAAAGATGTATGCATtgctgttatattattttatagaatttttttttttacttaaaaagtgcattaaagcaTATCTATgtcaaattgtttttaaatgttcaaaaattgCCACCTTTACTTGAAAGCATTTTGGGGTGCATTTggtaaatgtcaaaatgttagttgcttgttgtttttgttcgtTTGCTTGATTGTTTGTTAGAGTccattaaacaaaaactgatgCAGCTGCACCCAGCTTTCTGATTTCTGATGGCAAGAGTGGTAAGAGCCACACAAGACCGGCAGAAATAAAGGTGCAAACTGTCTAAAGGAATATAATGTGGGATgagtttatgtttacatttgtaTGGGAAATGATTTTATGTACACCATATGATTTTAGGTACGACATAAAAGGGAAGATTCTTTTTAATGgtgtttgtacattttcaaCTTTGCTCAGGTGCTCATACACAGATGAATGGGTTAAAGGCAATACATAATGTGTAAAGTGCATtggaaatgaaacagaaaaatacatatttttcctgttattctatatattatactacatagttttatttcaaaagctATAGCACCATTCCTCAGCATAAACTGTTTTCAACGTACATTTAGCCCATTGTTTgcataaacataacaaacatgctattattgtttttctgtttgtttgatttttatgtctgcttttttctttttttttttttttttttttttttacttgtatttactTCTATACCTGTGAACTATTTTTTTCGGACTCTATATTGTAATATCACaaattttctttataaacaaattatttttcctTCTCTGTCCACCTTCATTTCACAGATGTTGACTCTTCTCGCACTTTCTTGACTGAATGCACATTTCAGCTGTATTAAAAAATGCCCAATTACAA

Function

symbol description
acsl4b Is expressed in several structures, including digestive system; hatching gland; heart; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in intellectual disability and non-syndromic X-linked intellectual disability 63. Orthologous to human ACSL4 (acyl-CoA synthetase long chain family member 4).

NR:

description
PREDICTED: long-chain-fatty-acid--CoA ligase 4-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240692.1 True 3327 mRNA 0.43 15 11223954 11232994

Neighbor

gene id symbol gene type direction distance location
cwc15 cwc15,LOC107597228,LOC107592276,LOC107732607,LOC107747811 coding upstream 1134 11218523 ~ 11222820 (+)
fam76b fam76b,LOC107680374,LOC107597227,LOC107687655,LOC107592275 coding upstream 6209 11210376 ~ 11217745 (+)
mtmr2 mtmr2,LOC107747813,LOC107597225,LOC107592277,LOC107732604,LOC107680397,LOC107687656 coding upstream 19728 11198211 ~ 11204226 (+)
tbc1d8b tbc1d8b,si:dkey-110k5.6 coding upstream 37280 11170213 ~ 11186674 (+)
rnf128a rnf128a,LOC107592278,LOC107687662,LOC107732618,LOC107680400,LOC107747815 coding upstream 54402 11154539 ~ 11169552 (+)
stag2a stag2a,LOC107680370,LOC107732619,LOC107597229,LOC107687653,LOC107592356 coding downstream 413 11233407 ~ 11249164 (+)
cchcr1 LOC107680404,LOC107732622,LOC107747821,LOC107687693,LOC107592355 coding downstream 17631 11250625 ~ 11259480 (+)
nlgn3b nlgn3b,LOC107672382,LOC107680388,LOC107733224,LOC107597232,LOC103045798 coding downstream 71371 11304365 ~ 11322863 (+)
plp1b LOC107597234,LOC107680389,LOC107672433,LOC107592271 coding downstream 91749 11324743 ~ 11330306 (+)
iqcd LOC107733227,LOC107672405,LOC107597236 coding downstream 129072 11362066 ~ 11364940 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding upstream 14549 11204500 ~ 11209405 (+)
G35267 NA non-coding upstream 36260 11187254 ~ 11187694 (+)
G35229 NA non-coding upstream 204762 10945056 ~ 11019192 (+)
G35202 NA non-coding upstream 385587 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 407653 10813457 ~ 10816301 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding downstream 149676 11382670 ~ 11387170 (+)
G35309 NA non-coding downstream 172534 11405528 ~ 11405761 (+)
G35311 NA non-coding downstream 181047 11414041 ~ 11414688 (+)
G35322 NA non-coding downstream 208545 11441539 ~ 11442411 (+)
G35316 NA non-coding downstream 230875 11463869 ~ 11465339 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 73729 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 159508 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 290201 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 487895 10717531 ~ 10736059 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 1084221 10064217 ~ 10139733 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 33648 11266642 ~ 11303431 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 405522 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 691234 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 1016144 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 1281019 12514013 ~ 12528790 (+)

Expression


Co-expression Network