LOC122346045 (ddr2l,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312)


Basic Information

Item Value
gene id LOC122346045
gene name ddr2l,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1851607 ~ 1864706 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240698.1
AGCTACAGTACTGCTGTGTCTTTCTGTTCCTCAGAGATGTAGTCTGTAGTGTCGTCTGTCGGCAGACTCTGAGGTCTCACTATGCTGCTTTATCTGCTGCTGACCATCTCACTAACAAACATCAATGGCCAGATAGACCCAGCTCACTGTCGTTATCCTCTCGGTATGGAGGATGGGAGGATCAAAAACGATGACATCTCTGCCTCCAGCCAGTGGTATGAAACCACAGGCCCTCAGTATGCAAGGTTAAACCGTGAGGAGGGGGACGGCGCCTGGTGTCCTGCTGGTCAACTGCAGCCCTCAGACGTTCAGTATCTTCAGCTTGACCTTCGTCAGCTCATCTTCCTCACCGTGGTCGCTACGCAGGGTCGTTACGCGCGCAACTCCGGCAACGAGTTTGCGCGCAAATACCGCCTGGAGTACAGTCGCGACGGACACCGCTGGATCTCCTGGAGAAATCGCTTTGGTAGTGAGACTATAATGGGCAATATAAACACCTACGACTCTGTGGTGAGAGACCTCCATCCTCCCATCATCACTCGATTCTTACGCTTGATTCCCGTCACTGATGCCATACACACTGTGTGTATGAGAGTAGAGCTGTTCGGATGTGCCTGGCAGGATGGCCTGACGGCGTACAGCTCTCCAGAGGGCCAGACCATGATGCCTCCTGGCTATCCCATTACACCTCTCAACGACTCCACGTACGACGGGGCCCTGGAACGCAGGAAGCTGTCTGGGGGTCTGGGTCAGCTGACGGATGGTGTGATCGGTCAGGATGACTTTGTACAGAGAAGACTGGACCGCTTGTGGCCCGGATATGACTACGTGGGCTGGAGGAACGACAGCTTGGGCCCTGGATATGTGGAGATGGAGTTCCAGTTTGACAGACAACGAAACTTCACCTCCATGAAGGTCCACAGTAATAACATGTTCTCTCGGGGGGTGAAGATCTTCGCGTCCGTGTCCTGTGTGTTTAAGCTGCACCTCATTTCTGAGTGGGAAGCAGAACCGGTGGAGTTTCACACCGTTCTAGACGACAGGAACCCAAGCGCGCGTTACGTGACGGTCCCGCTGAAGCACAGATCGGCTGCGGCATTGCGATGCCGCTTCTACTTTGCTGACACTTGGATGATGTTCAGCGAGATCTCGTTTCAGTCTGCAACTAATGTGCTTCCTACCCAGAAGCCCCCATTGTTGACCCCTCCTTCTTACGAGGTTAACAGCAAACTACCACAAACTACACAAAAAACAGAGGACCAGACTACAGCAAATCCACCCAAACCAGGCTCTCCTGAAGAGGGCAGTACatcgattctgattggctgtctggTGACTATTATTCTTCTACTAGTGGTGATCATCTTCCTGATTCTGTGGTGCCAATATGTCTGCAAAGTCCTggagaaggcTCCGAGGCGTATTTTGGAGGAGGAGGTGACCGTGCGTTTGTCCTCTAGCAGCGACACAATAATTCTGCAGACTCCCCCGGTGCCCCCGCGCATCTCCCTCGACCCGCCCTACGAGAGGATCTTCCTGCTGGACCCCCAGTATCAGGATCCTGCTGCGCTCAGGAAACTTCCCGAGCTGTCGCGAAGCGCAGAAGCTTCTGCCTGTAGCGGAGGATATGCCGAACCTGACGTGACCCTGTGCACCCCTCACCAGTGTTTTCAGAGCAGCGTGCCGCACTACGCTGAAACCGACATCATCAGCCTGCAGGGCGTCACCGGCAGCAACATGTACGCCGTTCCGGCCCTCACCGTAGATTCCCTGACGCGGAAGGACATCTCTGTGGCCGAGTTCCCACGAGAGAGGCTGCTGTTCAGAGAGAAGCTCGGAGAAGGCCAGTTTGGTGAGGTTCATCTGTGCGAAGCCGAGGGGATGCAGGAGTTCGCGAAGGACCCTCGCGGCCACATCAGCGATGAGCCGATGCTCGTGGCGGTCAAGACCCTGAGAGAGGACGCGAACAAAAACGCGAGGAACGACTTCTTGAAAGAGATCAGGATCATCTCACGGTTAAGAGACCCGAACATCATTCGCCTGTTGGCGGTGTGCGTTGAGAGCGATCCGCTGTGCATGATCACGGAGTACATGGAGAACGGAGACCTCAATCAGTTCCTGTCCCGCCGTGAGATGCAGGACGATGGAGTTTCGGCTGGCGAATCGGCTACCATCAGctACAGAGTACTGATTCACATGGCCTCCCAGATTTCCTCGGGAATGAAGTATCTGTCCTCCCTGAATTTTGTTCACCGCGATCTCGCTACACGCAACTGTTTAGTGGGCACAAATAACACCATTAAGATCGCTGACTTCGGCATGAGCCGCAACCTGTACCGCGGAGATTACTACCGCATACAGGGAAGAGCAGTTCTCCCCATCCGCTGGATGTCCTGGGAAAGCATCCTACTGGGCAAGTTCACTATGGCCAGTGATGTGTGGGCATTCGGGGTGACCCTGTGGGAGATTCTGACCCTGTGTAAAGAGCAACCGTACGCCCAGTTCACAGACGAACAGGTGATCGAAAACACGGGAGAGTTCTTTAGAGACCAAAACAAACAGATCTAG

Function

symbol description
ddr2l Predicted to enable collagen binding activity and protein tyrosine kinase collagen receptor activity. Predicted to be involved in positive regulation of kinase activity and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: discoidin domain-containing receptor 2-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007155 cell adhesion biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240698.1 True 2568 mRNA 0.54 16 1851607 1864706

Neighbor

gene id symbol gene type direction distance location
sec14l8 sec14l8,LOC107741494,LOC107599607,LOC107668747,LOC107704732,LOC107755846,LOC107599126,LOC108431737,LOC108255515 coding upstream 31050 1806950 ~ 1820557 (+)
tctn2 LOC107704714,LOC107741513,LOC107599155 coding upstream 45566 1796834 ~ 1806041 (+)
ccl19a.1 LOC107704652,LOC107741512 coding upstream 55169 1794534 ~ 1796438 (+)
ydjc LOC107741491,LOC107704612,LOC107599608,LOC107755843,LOC107668745,LOC107599128 coding upstream 72181 1773965 ~ 1779426 (+)
LOC122344671 LOC107755842,LOC107599645,LOC107599132 coding upstream 106436 1743315 ~ 1745171 (+)
LOC122346048 prodhb,prodha,LOC107730849,LOC107704395,LOC107661597,LOC106568196 coding downstream 889 1865595 ~ 1876048 (+)
LOC122345240 rab5aa,LOC107592022,LOC105904716,LOC101476881,LOC100701272 coding downstream 13379 1878085 ~ 1880008 (+)
LOC122345241 kat2b,LOC107748684,LOC107696888,LOC107593605,LOC107592021,LOC107739562,LOC107688328,LOC108411559 coding downstream 17309 1882015 ~ 1892104 (+)
LOC122346055 nutf2l,LOC107592026,LOC107748755,LOC107697171,LOC107688399,LOC107593625,LOC107739636,LOC108410494,LOC103027823 coding downstream 34889 1899595 ~ 1900425 (+)
LOC122346053 edc4,LOC107733561,LOC107726309 coding downstream 42221 1906927 ~ 1917452 (+)
G32552 NA non-coding upstream 65965 1785401 ~ 1785642 (+)
G32542 NA non-coding upstream 84717 1766596 ~ 1766890 (+)
LOC122346170 NA non-coding upstream 86200 1762921 ~ 1765407 (+)
G32540 NA non-coding upstream 89325 1762005 ~ 1762282 (+)
G32539 NA non-coding upstream 89636 1761564 ~ 1761971 (+)
G32643 NA non-coding downstream 93412 1958118 ~ 1958584 (+)
G32644 NA non-coding downstream 101473 1966179 ~ 1966378 (+)
G32646 NA non-coding downstream 126843 1991549 ~ 1993168 (+)
G32642 NA non-coding downstream 131314 1996020 ~ 1997056 (+)
G32649 NA non-coding downstream 133473 1998179 ~ 1998680 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 8594 1835148 ~ 1843013 (+)
G32611 prrc2b,LOC107704672 other upstream 25493 1822654 ~ 1826114 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other upstream 58341 1791828 ~ 1793266 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 736202 1112264 ~ 1115405 (+)
G32277 NA other upstream 794454 1055193 ~ 1057153 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other downstream 35921 1900627 ~ 1905499 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 145511 2010217 ~ 2019150 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other downstream 400439 2265145 ~ 2268194 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other downstream 762378 2627084 ~ 2649361 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 1464094 3328800 ~ 3343070 (+)

Expression


Co-expression Network