zgc:65851 (zgc:65851,LOC107670379,LOC107708255,LOC107668750,LOC107599600,LOC107755851,LOC107573085)


Basic Information

Item Value
gene id zgc:65851
gene name zgc:65851,LOC107670379,LOC107708255,LOC107668750,LOC107599600,LOC107755851,LOC107573085
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2536025 ~ 2543574 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240699.1
ATTCTATGAacgccaaaacaaaaacaaagtgcgTATCACATGCACGCAAGACGTCCTATCACGTGCACGCCAAACTCACTTTTTTTGCGTATAGATTGCAGGCAAAGTGCAAAAATCGTGCTACTGATATTTCAACCCTTTCGAAGCCCTCACAGCACGGCCACAAAAGcgcgtatcatatgcacgccgACGTCACTTCACGCGTACGCCACAAAACCTCAGTTCACGAACTTTCCCTTGAGGAACCCAAACGCGGTTTTCTGTACTTCTTTGGCCTTTTTATCTATACGCTCGCTTTCTTAGTTGGCAACCTCCACCCGAAAGGGATGAGTGGCCACAAAAGCAGATCGAGACAGTGAATGAGCGAGCCCTCTCCTGGGACTCTGTCTTTTTGCTCAGGGTTGCAGGTTTGCCCCTTCACCACCGCCCATGCGTCAGATGATGCTCGCGCGCTCCGACTATAAAAGACGCCGGTGCGCCATCCCGACCGgcactctctttctctttctctgtcttccCGCATCCACACACTTACTTCACTCGCTCGGTCCGTGATCTCCAGCGCGCCAGCATGAGCTATTCCGGCGACATGTACACGAGCAGCTCCTACAGGAAGATTTTCGGAGATGCGCCGCGGCGCGTCCCGACGGCGGGTTACCGCTCCGGAGCGCAGCTTCAGCAGCAACATCAGCACCGCACCTACGGCTCTCCGTCCCCTGCGATCGTATCCTCAAGTTACCGGACCAAGCGCGGCTTCCAGCCCATGCAGGACTCCGTGGACCTGACCCAGACCACCGCCATCACCAACGAGCTGAAGATCATCCGCACCAACGAGAAGGAGCAGCTGCAGGCCCTGAACGACCGCTTCGTGACGTTCATCGAGAAGGTGCACAACCTCGAGCAGCACAACAAAGTTCTGGAGGCGGAGGTCGCGCTGCTGCGCCAGCGTCACAGCGAGCCGTCGCGTCTGCACGACCTCTACGAGCAGGAGATCCGCGAGCTGCGCGCGCGCGTCGAGGAGCTGACGCACGAGAAGAGCCAGATGCACCTGGACTGCGTGCAGATGAACGACGCGCTGGAGCGCCTCAAGGACAAGCTGGAGGAGGAGAGCCGGCTGAGGGAGGAGGCCGAGGGCAGTCTGAAGGGGTACCGCAAGGACGTGGACGACGCCACGCTGACGCGCCTGGAGCTGGAGAAGAAAGTGGAGTCTCTGCTGGATGAGATCGCCTTCCTCAGGAAGGTGCACGAGGAGGAGCTGCAGGAGCTCCAGGCGTCGCTCCAGGCCACGCAGGTGTCTGTGGAGATGGACGTGAGCAAGCCGGACCTCGCTGTGGCCCTGAAGGACATTCGTGTCCAGTACGAGTCTCTCTCCGCCCGGAACCAGCAGCAGGCGGAGGAATGGTACCGCTCCAAGTTCGTCACGGTGACGGAGGCGGCGGCGCGCAACAACGATGCCCTGAAGCAGACCAAAGACGAGCTGTGTGAGTACCGCCGACAGCTGCAGGCCCGCACCCTGGAGATCGAGGCCCTGAAAGCCCACAACGAGGCTTTAGAGAGACAGCTGGCGGAGATGGAGGACCGCCACAGCAACGAGATCGGCGAGCTGCAGGACACTATTCAGCAGCTGGAATCCGCTCTGAGGAGCACCAAGGGTGAGATGTCCCGTCATCTGCGTGAATACCAGGACCTGCTAAACGTCAAGATGGCGCTGGACATCGAGATCGCCGCCTACAGGAAGCTGCTGGAAGGAGAGGAATGCCGTCTGAGCTCTGTGGGCGGTGCCTTGCTACACTCCGCCTACTCTTACACGCCGAGCCGCACCTATGCCCTGAGGAAGGGCGGAGCCAAACCCgagacagaggaagaggaagagcaggaagaggaagaagaggaggagaaggaagaggaaggagaagaggaggaggagggaggagagGAGGCCGAGGAAGGAGAAGAACAGGACGAGGGAGGCgacgaggaggaagaggaggaggaagaagaagaagaacaggaggatgagaaggaaaaggaaaaagccGATGAGAAGAAGGAaaaggaagagaagaagagcccaaaggaacagaaagagaatgagaaagagaaagaaaaggagaaggagaaggagaagaagagcGATAGCAATAAGGCAGACAGCAAGAGCGCTAAGAGTGAGAAGGGGGACAATAACAAGAGTGAGAAGACCTCGGCGCTCAAGAGCAAGTAAAGCATCGACAAAAACACATCCagcgtccatccatccatccatcctcacCTCACTGACCTCATCTGGATCTCTGCTGCTGACCCAAGAGTTCTGCTCATCATTTACTTTCTTACAATAAGAGAGTGTTTCACACAAACCTCCGGAAGGAAAGAGAAAACGCCCCGTCTTACACGGCCTTGAATCTCAAAGAGGAAAATCCTCTTTACTCGTGTCGTTCCGAACCCTGTAGCTttctaaaacacaaattaaagggCTCACATGACGCCGCTAAAAAGAGCGTTCATTTGCGGCTTAATTGATTACTGATCCTCTCTGCCCCGCTTTTCTGAAACGTGTAGATTTTTACAAAACTCACTGTTCTGAAAAGCgcggtgtgctctgattggccggctaTTCGGCGCGCTGTGATGGAAATGTTACACCCCTTACCATATTTGGAAACACACAGCGTCTCCACGGCAACAATGCCACagttagtaatatgcattgctaagaacttactTCAAAGGTTTTCTCAACTCGGATTCCAAGATTTTAGTTGCATCTGAGCCCAATATTGTCCgatcataacaaaccagacattaATAGAAGTGCAGCATAAATCAGCATGCACTTctattttaagggaaaaaagcagcttttatcTTAAGCTAGTCTTCGAGAAAAGACGGAATGACGCTGGGGAGCGTGAATGATGACGAAAGGTTAACTTTTCACACGAAGACAGACCGCAAAGTGTTCACGTGCCATTATTACCCAGAATGCAGCACAAAAGCAAGCTGATGCCATGCAGTCCAACTACAAAACGGACCAAGTCTGCAGGTTCCAACCTCTCGGTGCTATTTGATTTTAAACCTAAGTGAGTTTGGACTTGGAGGAGGCGATTCATCCAGAGCTTCACTGATGTCCTGAATGTATGTCACGAGCCAAGCACAGGGACAGGCCGCGTCTCCTAACTCTCCAGCATCTACGCCCACATGAACGAAGTCGTCCGAGCTCATCTCATTCACATCGTCGCGCAAGAGCATGCAACGTTTTCCAACGTCCGTCCATCCCTCGACTGCACCGGAGTTAAACGAGGtcgtgtcagagagagagagagagagagcgtgcaTCAGTCGTGTGAGAAAACCCTTCTGCAATTTAGATTCTGACGCTTTAGAGACGATCGCTGCTAAATATCCCTCTATTCCTTCTTGTGTTCAAAAATGAGCTCCTCTTGATCGATTCATTCTTGACGGAGCTGATCTGCTTCCGAAGTCAagctcttcttctctttctaaTAAACGACACGTGGCTTGCTCAGTTTCCTTATTAGATATTTCCTTTCGATTACATCAGATGTGTCCGGACCGATGCTGAAATCAAAAgacgttttttatttattttatttttgggtagaTCTGTTGCTTGCACACACACCGAGctacatgcatataaaataaaaattactttccGCTTCAATAAATGtagttaaaataaacagtttgcaAGCACTTTCCTAAAAGCACGTTCTCTCATCATTTTTGTTGCATTGCAGTAAAGATGATGAGAGGAATTAATAACATTCACAGCATTTGTATTAAAGTACAAATAAAGTCTTGGCAGAACAACACAAGCTACCATGattgaataaatgctttaatatttaaataaagcaccaTTTTTATCACTTTATAATAGTTGTATTCGGGAGAGAGGGAGCAAAGAAAAGCATAACAGTCAAATAGTATCTTTAGTATatctttatgttttaaaaaatggtgtGAAATATCAGCGTCACGGATGGAAAAACAACCAGACATCGTCTGACGCTAAATATTTcctatttatgcatttttctgatgtgcataaaaaaagcCCATAGAATAAACTATTTGTTAACTCCAACCTCATTATCcctgattttttaattttccatcaATCTATCTATAAAcgttaatgttaaataaaactgacCGGATGAGACTAGTTTAGCTGAGGAACAATTCAGAAGTTCTCCGGTGTTTTCTCTTGAATTATACCTCGTCAGTGAAAGCATCTTCACTCATTCGACCTGTTTAACCCTTATGTTGTACTGGGTTTTAGGGTTAAAGGAAATATCTGGGAAGACGGGACAGTGCAGCAAATCATTTCAAAGAGCAGGAAAAGAGGGAAGAGCGAGACTTCCAGCGAATGATTCGAGAGCTGAATACATCGAGAGGAGGTTCATGTGCATGGCCTGATTCACGTGGAGCTTGACAATACGAGGGGTGGGATAGATTTGCTTGATGTGTGTAAAACTGTACGTAAATGCCTTAATCATGAATCTAAACTGCTTAAAAGAGTCCTCACGTTTTCTGCATCTCCACGCTGTTTCAGAGACGTCCGGAGAGCTGATTCAGTGATGTTCCCCTAAAGCCAAATAAAGCCATTTATCAACCAAA

Function

symbol description
zgc:65851 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in nervous system and neural tube.

NR:

description
low molecular weight neuronal intermediate filament-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240699.1 True 4650 mRNA 0.49 4 2536025 2543574

Neighbor

gene id symbol gene type direction distance location
purba LOC107737074,LOC107755849,LOC107668742,LOC107670383,LOC107599601,LOC108431741,LOC107580671 coding downstream 8688 2524559 ~ 2527337 (-)
LOC122346100 LOC107757959,LOC107587426,LOC107709681,LOC107681216,LOC107560221,LOC107560220 coding downstream 117972 2385151 ~ 2418053 (-)
LOC122345768 LOC107562125,LOC107690349,LOC107554462,LOC107715242 coding downstream 436844 2090152 ~ 2099181 (-)
LOC122346063 LOC107747844,LOC107554104,LOC107556635,LOC107667225 coding downstream 445869 2087785 ~ 2090156 (-)
LOC122344882 gnrhr4,LOC107715601,LOC107575089,LOC107690392,LOC107715190,LOC107691141 coding downstream 477292 2052705 ~ 2058733 (-)
mxd1 mxd1,LOC107670395,LOC107708253 coding upstream 11902 2555476 ~ 2579803 (-)
LOC122345702 figla coding upstream 63640 2607214 ~ 2609585 (-)
tet3 LOC107654213,LOC107708251,LOC107557386,LOC107697244,LOC107551814,LOC107755856 coding upstream 280597 2824171 ~ 2866043 (-)
ap3m2 ap3m2,LOC107755857,LOC107551816 coding upstream 322591 2866165 ~ 2874893 (-)
kat6a kat6a,LOC107708249,LOC107697242,LOC107755858,LOC107699914,LOC107551817 coding upstream 332735 2876309 ~ 2910382 (-)
LOC122346060 cacna1ba,LOC107560222,LOC107587427,LOC107709695 non-coding downstream 100325 2433286 ~ 2435700 (-)
G32740 cacna1ba,LOC107709695,LOC107757972,LOC107587427,LOC107681248,LOC107560222,LOC107690670 non-coding downstream 111213 2422985 ~ 2424812 (-)
LOC122344845 LOC107709689,LOC107560224,LOC107681222 non-coding downstream 151324 2383907 ~ 2384701 (-)
LOC122344860 LOC107560224,LOC107690695,LOC107757958,LOC107681222,LOC107709689,LOC107587469 non-coding downstream 156630 2377967 ~ 2379395 (-)
G32727 LOC107681241 non-coding downstream 160362 2374002 ~ 2375663 (-)
G32870 NA non-coding upstream 108870 2652444 ~ 2728807 (-)
G32881 NA non-coding upstream 206385 2749959 ~ 2797599 (-)
G32882 NA non-coding upstream 221709 2765283 ~ 2766771 (-)
G32883 NA non-coding upstream 224205 2767779 ~ 2774190 (-)
G32884 NA non-coding upstream 225627 2769201 ~ 2770371 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other downstream 513103 2020096 ~ 2022922 (-)
G32676 NA other downstream 568277 1966637 ~ 1967748 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other downstream 841739 1673024 ~ 1694286 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 1181611 1342606 ~ 1354414 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 1199838 1312604 ~ 1336187 (-)
snrnp27 snrnp27 other upstream 36974 2580548 ~ 2585452 (-)
add2 add2,LOC107668755 other upstream 43013 2586587 ~ 2605917 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other upstream 392169 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other upstream 407888 2951462 ~ 2960177 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other upstream 1201101 3744675 ~ 3752764 (-)

Expression


Co-expression Network