LOC122346048 (prodhb,prodha,LOC107730849,LOC107704395,LOC107661597,LOC106568196)


Basic Information

Item Value
gene id LOC122346048
gene name prodhb,prodha,LOC107730849,LOC107704395,LOC107661597,LOC106568196
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1865595 ~ 1876048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240700.1
ATGACCCCATCAACATCTCAACATTCCTTCCTGTTGGAACATTACCGACGTCAAAACATTGTCTCCGCTGAGCCGCCCCATGCAGCGTATCCACAGCTCTGGGGTGGACGGGGGAAGAGCGGAGGCGTTGCTGCGAGTGCCGTTCGAAGGATGTGGAGATCACAGGAGCTCGGTCTAAACAAATCACTGCCCCGTGTGGCTGTATCTTGCATGTCTACATCAGAGAAAGAAAGCCCTGGAGCTGAACAGCGGGAGAAAAAATTCACAGCCCATCGGAAGTTTGGCGATCGTCGTGAAGGCGTGACAAGCGCTCGTACTTATTTCTATGCCGATGAGGCCAAATGCGACCAACACATGGAGACTTTCCTGAAATGCATCAAAGCCTCGGGTGGAAGTTCTGAAGACGGTTTCTCGGCTATTAAGATGACTGCCTTGGGGCGACCACAATTCCTGCTCCAGTTCTCCGAGGTGCTGGTGAAATGGAGACGCTTTTTCAGTTTCCTTGCTGCCAAGCAGGGGAAAGACGGTGTGGAGGTGCTGGAGCAGAAACTGGATCTGGAGCAATTGCAGACTTGTCTAGCTAGACTGGGAGCTCAAGGCAACATTCAGAGCTGTTTCTCTGATGGACGACTGCACTCATCAGGCATGGTGGACATGCTGGACTGGAACCGCCTGATCGACGAGAGAACGAAGATATCTGATCTGCTGGTTGTCCCGAACCTGGAGACTGGTGAGTTGGAGCCTCTTCTGTCCAAGTTCACAAAGGAAGAGGAGAGGCAGATGAAAAGGATGCTTCAGCGACTGGACGTCTTGGCTAAGCATGCGGTGGAAAATGGCGTCAGGCTGATGGTGGACGCCGAACAGACGTATTTCCAGCCTGCCATCAGCAGACTCACTGTGGAAATGAAGAGAATCTTCAACAGAGACAAAGCTGTCGTTTTCAACACCTATCAGTGCTACCTCAGAGAGGCATTTGATAATGTGTCCATGGATGTGGAGCTATCAAGAAGGGAAGGCTGGTGTTTCGGTGCCAAGTTGGTAAGGGGGGCTTACATGTACCAGGAGAGAAGCCGAGCTGCAGAGATTGGATACGAAGACCCCATCAACCCCGACTATGAATCCACTAACAGAATGTACCACAGGTGTCTGGAGTATATTCTGGAGGAGATCAACCACAACAGGATGGCCAATGTCATGGTGGCGTCTCACAACGAGGACACGGTCAAATTCACGCTGGACAAAATGAACGAGATGAGTCTCTTTCCGACGGAGAACAAGGTGTACTTTGGCCAGCTGCTGGGGATGTGCGATCAGATCAGCTTCCCGCTGGGTCAGGCGGGGTTCCCCGTGTACAAGTATGTGCCGTACGGCCCGGTGAACGAGGTCATCCCGTACCTGTCCCGCCGGGCGCAGGAGAACCGCGGCTTCATGAAGGGCTCTCAGAGAGAACGCAGTCTGCTGTGGAAGGAGCTCAAGCGCAGGTTCTTCAGTCGACAGCTGCTCTACAGACCCGTCTACTAAACCTGACGTCTGCTGCGCTCTCTCAGTTTCTCCACACCGAGCGGACATCTTGTAGGTCTATAGTTCGTCATCAGCGGCTTTGAAATGAACTGGAGTTAAAGACAACATGAAACTGCATTCGCAATGCCTTAAACTTCTGCAGTGTGACGTGAAAAACAGAAAGTGAAACAGTGGAACTTAATTTGAGAAAAGGAAACCTTTTTAGTAATATCTTGTTTTTCTAGATCAacagatgatttatttatttttttacgaagaaattaaataaaaagcaactcATTGGCacttagcaaccgcatagcaacaccctagcaatcaCCCTGGATATCTTAgcgactgcatagcaacaccttggcaaccacaataaaaaaattcaaactttaagcttttaaaagtacttttaaactTCAAACCATTTCAGACTGAAAACCATCAAaccccagtttcacagacaaggcttaaacctagtcctagactaaaatgtaaatctgagcggtttcaactgaaagaaactcaGAAGCTCGCAAGAGTGATCTTAAAGCAtttcagtgcctttgttttgtcttaagatgcacaccagtaatgttttattttttttttcgaaaacatgtttgaaaattactttaatgtcctaattgaactatggcttTATCCTTGCTTAGGCTAACCCCCGTCTATTAAACCGGACCTTAAACCTCTTAAACTTTTAATCTTTTCAATCGTTTTCAATCTTTCTGGCCAACGTAACGTTTGACTTgagaaacctttttttcaattattttcaatCTTCTATTTGTCCTACACACTTATTGGATCTAATAtgcatttgttgtattttattcaacTTAACACAAACCTAGTATCtgataaaaagctaatatttaaaaacacatttttatattttatttatcccATGCTGCCAGTTATCAgatttcatataaattatatatttttttctacataacccattattcaaaaaaaaatatttaaaaacatattcatttttatttattgtttttaaatttaatttattccacataaatcttcaaaaaacaaa

Function

symbol description
prodhb Predicted to enable proline dehydrogenase activity. Predicted to act upstream of or within proline catabolic process. Human ortholog(s) of this gene implicated in amino acid metabolic disorder; hyperprolinemia type 1; and schizophrenia 4. Orthologous to human PRODH (proline dehydrogenase 1).
prodha Predicted to enable FAD binding activity and proline dehydrogenase activity. Predicted to be involved in proline catabolic process to glutamate. Predicted to act upstream of or within proline catabolic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in amino acid metabolic disorder; hyperprolinemia type 1; and schizophrenia 4. Orthologous to human PRODH (proline dehydrogenase 1).

NR:

description
PREDICTED: proline dehydrogenase 1, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006537 glutamate biosynthetic process biological_process
GO:0006562 proline catabolic process biological_process
GO:0004657 proline dehydrogenase activity molecular_function

KEGG:

id description
K00318 PRODH, fadM, putB; proline dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240700.1 True 2578 mRNA 0.44 13 1865595 1876048

Neighbor

gene id symbol gene type direction distance location
LOC122346045 ddr2l,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312 coding upstream 889 1851607 ~ 1864706 (+)
sec14l8 sec14l8,LOC107741494,LOC107599607,LOC107668747,LOC107704732,LOC107755846,LOC107599126,LOC108431737,LOC108255515 coding upstream 45038 1806950 ~ 1820557 (+)
tctn2 LOC107704714,LOC107741513,LOC107599155 coding upstream 59554 1796834 ~ 1806041 (+)
ccl19a.1 LOC107704652,LOC107741512 coding upstream 69157 1794534 ~ 1796438 (+)
ydjc LOC107741491,LOC107704612,LOC107599608,LOC107755843,LOC107668745,LOC107599128 coding upstream 86169 1773965 ~ 1779426 (+)
LOC122345240 rab5aa,LOC107592022,LOC105904716,LOC101476881,LOC100701272 coding downstream 2037 1878085 ~ 1880008 (+)
LOC122345241 kat2b,LOC107748684,LOC107696888,LOC107593605,LOC107592021,LOC107739562,LOC107688328,LOC108411559 coding downstream 5967 1882015 ~ 1892104 (+)
LOC122346055 nutf2l,LOC107592026,LOC107748755,LOC107697171,LOC107688399,LOC107593625,LOC107739636,LOC108410494,LOC103027823 coding downstream 23547 1899595 ~ 1900425 (+)
LOC122346053 edc4,LOC107733561,LOC107726309 coding downstream 30879 1906927 ~ 1917452 (+)
LOC122346081 LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695 coding downstream 302535 2178583 ~ 2207545 (+)
G32552 NA non-coding upstream 79953 1785401 ~ 1785642 (+)
G32542 NA non-coding upstream 98705 1766596 ~ 1766890 (+)
LOC122346170 NA non-coding upstream 100188 1762921 ~ 1765407 (+)
G32540 NA non-coding upstream 103313 1762005 ~ 1762282 (+)
G32539 NA non-coding upstream 103624 1761564 ~ 1761971 (+)
G32643 NA non-coding downstream 82070 1958118 ~ 1958584 (+)
G32644 NA non-coding downstream 90131 1966179 ~ 1966378 (+)
G32646 NA non-coding downstream 115501 1991549 ~ 1993168 (+)
G32642 NA non-coding downstream 119972 1996020 ~ 1997056 (+)
G32649 NA non-coding downstream 122131 1998179 ~ 1998680 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 22582 1835148 ~ 1843013 (+)
G32611 prrc2b,LOC107704672 other upstream 39481 1822654 ~ 1826114 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other upstream 72329 1791828 ~ 1793266 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 750190 1112264 ~ 1115405 (+)
G32277 NA other upstream 808442 1055193 ~ 1057153 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other downstream 24579 1900627 ~ 1905499 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 134169 2010217 ~ 2019150 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other downstream 389097 2265145 ~ 2268194 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other downstream 751036 2627084 ~ 2649361 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 1452752 3328800 ~ 3343070 (+)

Expression


Co-expression Network