LOC122346053 (edc4,LOC107733561,LOC107726309)


Basic Information

Item Value
gene id LOC122346053
gene name edc4,LOC107733561,LOC107726309
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1906927 ~ 1917452 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240708.1
ATGGCTTCTGGTTCCAACATGGACATAGAGGGCGCGACCCAGCACCTTCGGGACATCTTGAAACTGGATCGTCCCGGTAATTCGGCCGAGCCTTTGGTAGAGAGCCAGAGAAAACCTTCTTTTAATGGAGAGTTGAATGGCGTTCTTGGAGCGGATCTTATTGGAGCAGGAGGACTTGCAACAATGGTGGAGCCAGCTGCTCACAACTCAGACAAACTTAACGGACAGGACACACAGACTATCTGCCTTTCAGGAGATGATGGGTCCACTTGTGTCCCCATCAGAGCAAACAATGTTGAAATCGTGTCCAGTCGTGACTCTAGTATTGACAGTAAGGCTCGTGGCAGCAACAagGTTAAAATTCAGCCCGTGGCCAAATATGACTGGGAGCACAAGTACTACTATGGCAATTTAATAGCTGTGTCCAACTCGTACTTGGCTTATGCCATCCGAGGTGCAAACAATCATTCTATGATCCGAGTGCTGCGGCTGGGATCAACTGAGCGTTCGCTGCTGAAGGGCTTCACCGGTGCCGTCACAGACCTTGCTTTCGCCCACTTGGACTCCACCCTTTTGGGTTGCGTGGATGAGGCTGGAAATATGTTCATTTGGCAACTCACTAGCCACAGCAGCAAAATACAAGATGAAGTGATCGTTCACATCCGAAGGCCAGAGGACACTCCACTAAATTCCAACCGCAGACTCATCTGGTGTCCCTTCATCCCGGAGGACAATGATGAGAGTCCAGAGGATGCGTGTCAGACACTGGCACTCCTTCATGAAGACAGAGCTGAGGTTTGGGACCTAGACATCCTCCGATCCAATAACAGCTCATGGCCTGTGGATGCCACAGAACTGAAAGAGGGCTTCATCACCATTAGAGGACACACAGCACGCATTAGTGAGGGAGCTCTGTCCCCTGACGGCACGGTCTTGGCCACAGCCAGTCATGATGGATTTGTAAAGTTCTGGCAAATTTACATTGAAGGACAGGACCAACCCAGATGCCTGCATGAATGGCAGCCACATAATGGTCGGCCTCTTTCCTGTCTGCTCTTTTGTGACAACCACAAGAAGCAAGACCCAGAgTTTTCCCCAGATCCATTTAACAGCAGTGTTCTACCCAGCCTGAAGGCTAGTTTGGACCTTTCTGCAGAATTTCTCATCCTCAGTGATGTTCAGAGGAAGGTGTTGTACGTCATGGAGCTGTTACAGGATCAGGAAAAAGGCCGCGCTAGCTTCACTGCAGTTTCAGAGTTTCTGCTTACGCACCCTGTGCTAAGCTTCGGCGTGCAGGATGTTGCTCGCGCCAGACTGCGCCACACAGAGGTCCTTCCCCCTGATGAAGAAAGTGAAAGCATGACGACAGAAGGAAACCAGGGACCCTCTGAGTCCAAATCAGGAATCCAGATTAAACTCTACTGTGTTCATACAAaATCACTACAGGATGTGCAGATCTGGTTCCAGCCCAATCAGGGAGCCTCATCCTCCCTCTTTATGCCACAGTCTGGATCACCTGGATCACAGGATGGCTTtgGTTTTTCTGACCCACTTGCTGATCTGAATGTGGAGGCAATGAGCTCTGATAAAGAGTCTGGAGATAGTGGATCACAGAATGACCTGAGTAAGATTCTGGCTCTTCCAACTCCAGCTGACTTCATGAGTCCAGCCCCATCAGCCTTGCCCAAACTCATGACCCCAGATGCCTTCATGACGCCCAGCACCTCCGTTTTCATGAGTGTTTTGAGACTTTTGGATCCTACTGAaggTGGAGATGATCTGGCCCAGAGCCCTAAAATGTCTGTTGAATGTGGAAACAGCAGCTTGACTCTGAATGCCAGCTCAAGCAGTCCGAGATCCAACTCTATTCTCATCTCAGGCCTTGGGGAAAATATCCAGGCTTTCTCTCCCCCACTGGTGCTCTCTCCATCCCTCCTGCGAGAGGCCTCTCTGCTCTGTGAAGCTGCTCCTTATTCTCACAGACTTCCCCTTCCTTATTTCCCATCTCCACCTCCACAGGTTTCCCCTCCAAACCCTCCTCTCTCCCTGGATCTCCAGGCCATAGACCCTATGGTTGTCCCCCAGGCCTCACCGACGAGAGCTCGCTCTCCAGATGTCATCTCCTCTGCTTCTACGGCAATGTCCCAGGACATCCCCGAGATCGCCTCTGAGACCCTGCAGAGGGGGCTGGCCAGCGCCGCTGCTGACTCAGGCCCTGTCCTACATTCTGACAGCATGGCATCAGCCGCATCAGTCCTCCACCTGTTGTCTCCGAGAGCCCGGAGCAGTGCTGAGCACAGTTTGCTGCCTCTGGAATTGGGTGCAGCATCTGTGGATGGAGAACAGAGACTTAATACCACACCCTCCTTGCTGGAGACGGCTCTGTCGCAGGAGAACGCAGTAGCAGCCGGAGGATCCTGTTCCGACAGCAGCGTGAACCACACCTGGCCCGCAGCGCCTGATATCACACGAGAAACTCGCAACAGCCTGAGAGACAATGGTTTGGGAGActgCTCTAGGGAGGAAATAAAGGACAGACACATTTCTTCTCCATACCACAGGCGCACATATCACCTGACTCAGAATGACAGTCAGGATGCAAGTGCAGAGCAGAGCGATCATGATGATGAGGTCGCTAGTCTGGCCTCCTCCTCAGGAAATTGTGGCCCTCGCTCTTCTCACAGACTTCCTGTGAAAGACTGGAAAACATCTCCCCGCAGCTCCCCTAAGCTCAAGAGGAAGAGCAAGAAGGATGAAGGAGAGTGCTCGCAGTCTAGACAGATTGAAAACCAGATGAGCACAGAGGTGCAGGACGAGCTCCTACAGATGTTAAGGAGTCAGCAAAGGGAGATCGCTGAGCTGAGACAGAACCAGCTGGATCTTCTGCAGAGAGTCACCAGCCACATGGACGCTGTTCAGAGCTCCATCATGGCTCACATTGAGCACGCCATGTTGGCTCAGCAGGAGCAAGAACGTATCCTGCCACTAGAGGGAGATTTGTAG

Function

symbol description
edc4 Predicted to be involved in deadenylation-independent decapping of nuclear-transcribed mRNA. Predicted to be located in cytoplasm and nucleus. Predicted to be active in P-body. Orthologous to human EDC4 (enhancer of mRNA decapping 4).

NR:

description
PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1

GO:

id name namespace
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240708.1 True 3003 mRNA 0.52 21 1906927 1917452

Neighbor

gene id symbol gene type direction distance location
LOC122346055 nutf2l,LOC107592026,LOC107748755,LOC107697171,LOC107688399,LOC107593625,LOC107739636,LOC108410494,LOC103027823 coding upstream 6502 1899595 ~ 1900425 (+)
LOC122345241 kat2b,LOC107748684,LOC107696888,LOC107593605,LOC107592021,LOC107739562,LOC107688328,LOC108411559 coding upstream 14823 1882015 ~ 1892104 (+)
LOC122345240 rab5aa,LOC107592022,LOC105904716,LOC101476881,LOC100701272 coding upstream 26919 1878085 ~ 1880008 (+)
LOC122346048 prodhb,prodha,LOC107730849,LOC107704395,LOC107661597,LOC106568196 coding upstream 30879 1865595 ~ 1876048 (+)
LOC122346045 ddr2l,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312 coding upstream 42221 1851607 ~ 1864706 (+)
LOC122346081 LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695 coding downstream 261131 2178583 ~ 2207545 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding downstream 332206 2249658 ~ 2264585 (+)
LOC122345419 man1b1b,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 coding downstream 352761 2270213 ~ 2277034 (+)
LOC122345384 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 coding downstream 611050 2528502 ~ 2531593 (+)
LOC122345789 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 coding downstream 799561 2717013 ~ 2725424 (+)
G32552 NA non-coding upstream 121285 1785401 ~ 1785642 (+)
G32542 NA non-coding upstream 140037 1766596 ~ 1766890 (+)
LOC122346170 NA non-coding upstream 141520 1762921 ~ 1765407 (+)
G32540 NA non-coding upstream 144645 1762005 ~ 1762282 (+)
G32539 NA non-coding upstream 144956 1761564 ~ 1761971 (+)
G32643 NA non-coding downstream 40666 1958118 ~ 1958584 (+)
G32644 NA non-coding downstream 48727 1966179 ~ 1966378 (+)
G32646 NA non-coding downstream 74097 1991549 ~ 1993168 (+)
G32642 NA non-coding downstream 78568 1996020 ~ 1997056 (+)
G32649 NA non-coding downstream 80727 1998179 ~ 1998680 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 1428 1900627 ~ 1905499 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 63914 1835148 ~ 1843013 (+)
G32611 prrc2b,LOC107704672 other upstream 80813 1822654 ~ 1826114 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other upstream 113661 1791828 ~ 1793266 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 791522 1112264 ~ 1115405 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 92765 2010217 ~ 2019150 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other downstream 347693 2265145 ~ 2268194 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other downstream 709632 2627084 ~ 2649361 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 1411348 3328800 ~ 3343070 (+)
G33015 NA other downstream 1687734 3605186 ~ 4144396 (+)

Expression


Co-expression Network