LOC122346055 (nutf2l,LOC107592026,LOC107748755,LOC107697171,LOC107688399,LOC107593625,LOC107739636,LOC108410494,LOC103027823)


Basic Information

Item Value
gene id LOC122346055
gene name nutf2l,LOC107592026,LOC107748755,LOC107697171,LOC107688399,LOC107593625,LOC107739636,LOC108410494,LOC103027823
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1899595 ~ 1900425 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240710.1
TCTGCTGGTAACCTTTTCTTCGCTGCTTCTTGTTCCGGCCAATAAGGCGCGAAGTTACTCAGCTCAGGTAGCGTTGCGATTACATCGAGGTGGTCGTTTattCGGCTACACGTGGAAATTTTCTCTTGTCGAACTCGCACGGGATCTTTTCGTACAGCGAGGAACAATGGCAGAAAAACCGATGTGGGAGCAAATCGGCAGCGGGTTCGTGCAACACTATTATCAGCAGTTTGATACAGACCGCGTGAAGCTCGCCGACCTGTATACTGATGCTTCCTGTTTGACGTGGGAAGGAGAGGGATTTCAAGGGAAGAACGCAATCATGACCAAATTAAGTAGCCTTCCTTTTCAGACCATTCAGCACATCATCACCGCTCAGGACCATCACCCCACTCCAGACAGCTGTGTCATGAGCATGGTCATGGGCCAGCTTAAAGTAAGACTGCATTTACTAAAAACAGTTCTGTTTCGTTAGACAGCTGTCAAAACGTAGGTT
>XM_043240712.1
CTCAGATCTGCTGGTAACCTTTTCTTCGCTGCTTCTTGTTCCGGCCAATAAGGCGCGAAGTTACTCAGCTCAGattCGGCTACACGTGGAAATTTTCTCTTGTCGAACTCGCACGGGATCTTTTCGTACAGCGAGGAACAATGGCAGAAAAACCGATGTGGGAGCAAATCGGCAGCGGGTTCGTGCAACACTATTATCAGCAGTTTGATACAGACCGCGTGAAGCTCGCCGACCTGTATACTGATGCTTCCTGTTTGACGTGGGAAGGAGAGGGATTTCAAGGGAAGAACGCAATCATGACCAAATTAAGTAGCCTTCCTTTTCAGACCATTCAGCACATCATCACCGCTCAGGACCATCACCCCACTCCAGACAGCTGTGTCATGAGCATGGTCATGGGCCAGCTTAAAGTAAGACTGCATTTACTAAAAACAGTTCTGTTTCGTTAGACAGCTGTCAAAACGTAGGTT

Function

symbol description
nutf2l Predicted to be involved in protein import into nucleus. Predicted to be part of nuclear pore central transport channel. Is expressed in several structures, including blood; immature eye; nervous system; neural tube; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human NUTF2 (nuclear transport factor 2).

NR:

description
PREDICTED: nuclear transport factor 2-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240710.1 True 496 mRNA 0.48 4 1899601 1900425
XM_043240712.1 False 470 mRNA 0.48 4 1899595 1900425

Neighbor

gene id symbol gene type direction distance location
LOC122345241 kat2b,LOC107748684,LOC107696888,LOC107593605,LOC107592021,LOC107739562,LOC107688328,LOC108411559 coding upstream 7491 1882015 ~ 1892104 (+)
LOC122345240 rab5aa,LOC107592022,LOC105904716,LOC101476881,LOC100701272 coding upstream 19587 1878085 ~ 1880008 (+)
LOC122346048 prodhb,prodha,LOC107730849,LOC107704395,LOC107661597,LOC106568196 coding upstream 23547 1865595 ~ 1876048 (+)
LOC122346045 ddr2l,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312 coding upstream 34889 1851607 ~ 1864706 (+)
sec14l8 sec14l8,LOC107741494,LOC107599607,LOC107668747,LOC107704732,LOC107755846,LOC107599126,LOC108431737,LOC108255515 coding upstream 79038 1806950 ~ 1820557 (+)
LOC122346053 edc4,LOC107733561,LOC107726309 coding downstream 6502 1906927 ~ 1917452 (+)
LOC122346081 LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695 coding downstream 278158 2178583 ~ 2207545 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding downstream 349233 2249658 ~ 2264585 (+)
LOC122345419 man1b1b,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 coding downstream 369788 2270213 ~ 2277034 (+)
LOC122345384 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 coding downstream 628077 2528502 ~ 2531593 (+)
G32552 NA non-coding upstream 113953 1785401 ~ 1785642 (+)
G32542 NA non-coding upstream 132705 1766596 ~ 1766890 (+)
LOC122346170 NA non-coding upstream 134188 1762921 ~ 1765407 (+)
G32540 NA non-coding upstream 137313 1762005 ~ 1762282 (+)
G32539 NA non-coding upstream 137624 1761564 ~ 1761971 (+)
G32643 NA non-coding downstream 57693 1958118 ~ 1958584 (+)
G32644 NA non-coding downstream 65754 1966179 ~ 1966378 (+)
G32646 NA non-coding downstream 91124 1991549 ~ 1993168 (+)
G32642 NA non-coding downstream 95595 1996020 ~ 1997056 (+)
G32649 NA non-coding downstream 97754 1998179 ~ 1998680 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 56582 1835148 ~ 1843013 (+)
G32611 prrc2b,LOC107704672 other upstream 73481 1822654 ~ 1826114 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other upstream 106329 1791828 ~ 1793266 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 784190 1112264 ~ 1115405 (+)
G32277 NA other upstream 842442 1055193 ~ 1057153 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other downstream 202 1900627 ~ 1905499 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 109792 2010217 ~ 2019150 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other downstream 364720 2265145 ~ 2268194 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other downstream 726659 2627084 ~ 2649361 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 1428375 3328800 ~ 3343070 (+)

Expression


Co-expression Network