homer1b (homer1b,LOC107720277,LOC107699726,LOC107555494,LOC107703256,LOC108423652,LOC108255354)


Basic Information

Item Value
gene id homer1b
gene name homer1b,LOC107720277,LOC107699726,LOC107555494,LOC107703256,LOC108423652,LOC108255354
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19134372 ~ 19156518 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240713.1
CCATATCAGCAGGGCGTTGAATGGTCGCCTTGCACTGGTAGCAGGGCACCAATGTGCCTGACTGCTTAGGACAGGCCCAGGTTACCACCTGGATTCAAACAGTGGTGATCAGCAGCAAGATGGAGGCTGAAGAAATGGTCATCCGTCTGCCGGGACGTTGCAGCGCGCCTGGTGGAGTCGGAGAGACGACGGTGCTCAGGCACAAAGAGGTTCACCACTTTTTCTTCCTACCTTTCAGGGAGCAGCCCATCTACAGCACCCGGGCACACGTCTTCCAGATAGACCCCAACACAAAGAAGAACTGGATGCCCACCAGCAAGCATGCGGTCACTGTATCTTACTTCTATGACAGTACCAGGAACGTGTACAGGATCATCAGCCTGGACGGATCAAAGGCAATAATAAACAGCACTATCACCCCGAACATGACCTTCACGAAGACGTCTCACAAGTTTGGGCAGTGGGCAGACAGCCGTGCCAACACAGTGTATGGGCTGGGTTTCTCCTCTGAGCATCATCTGGCCAAGTTTGCAGATAAATTTGCAGAGTACAAGGAAGCAGCCAGGATGGCCAAGGAGAAGTCTCTAGAAAAGATGGAGCTGGCAAGTTCGCCCTCTCAGGAATCGCCTGCTGACATTCATTCCCCCCTGACTCCACCCGTCACCGCGGACCTCTGCCGAATCAACGGTGATGACGTCAATCTGTCTGACGTGTCACCCAATTCTGTGCTCCAATCAGACCTTTCCCCGACCACGCCCACCCTTGCACACAGCCCGACTACCAACAAACACTGGGAAGCAGAGCTCGCAGCGCTAAAGAGCAACAATGCCAAGCTCACAGCCGCTCTGCTGGAGTCCACGGCCAACGTCAAACAATGGAAACAGCAGCTAGCAGCTTATCAGGAAGAGGCTGAAAGGCTACACAAACGGGTTTCAGAACTGGAAAGCCAGAGTAGTCAAACCAATGTGATCAAATCCCAGAAAACAGAACTGAACCAAACAATAGAGGAGCTGGAGTGCACATTAAAGGCAAAAGAAGAGGAAATGGTGCAACTGAAAGAAGAAATAGAAAATGCAAAGCAGCTTCAAACTCAGAAAGATGAACTCACCAAAAAGTTAGAGGATACAGATTTGAGGAATAAGGAGCTTGAGGAACAGCTGGCTGATCTGGAGCAACGTCTGGAGTCAAGTCAAGTGGATCAGGAGAACCTCCGCAAGAACCTCAAAACCCTGCTGGAGATTCTGGATGGAAAGATCTTCGAGCTGACAGAGCTGAGAGACAACCTAGCTAAGCTCATAGAGGACAGCTAGACTCCTCCAACTCTTGCCTCAAAACATGACTTTAAAGCcactttcctttcctttttacGAAATACACAGCGCCCGATTCAGGCCGAGAGATTCTGATGTGCTTTCGGACTCTCGTTCACTCACTTACACGGAATGATAAACCTTTGGTTGCacttgattttgtatttttgaggtGGGTTTATTCTTTTCAGTGCCACTGCTACCTACCGAATTTTATTGTCAACAATACACCCGTACTTTTGTCTCTGTTTTCTCCAATTTCCCCCCAAAATAGGCAGCCTGCAAAGAACGTGGCTGCATATAGGCTCCTACTATTTTTTAAAGGTGCTGGTTTCGCGTGCCTGGCTGTTGGCGTTAATGGACGTTTCTTATGCTGCTGAGGACACTACTGAATTACACTGACTGGATCTTCAGTCGTATTTTAAGACTGGATATTCAGAGCCATATGTTGTAGCCAAATGTTATTGGCTTGCCTCTTCCCCGTCATGGAAACTGCCTCAATGTTCAATCAGTCAAAGTTTCAGGATACTCTCAACCGCTGACCTAAAAAGCTCTTGACATTTAGCAGACTTCGAGACGTAGATGTGGCGTATGCTTTAGGCCTGTAATATACACTGAGCAATATTAGTGTGAACGTCTGTATGCCAGATTAGTGCAAGTCACTTCAGTGCATCCGTCAGGTACTTAAACAGTCGAAAGGATGAATTTATGGCCCGTTGTAGGTAACCTTTGGATTTCTCCGATGACCAGTGTAATGCTTTTGGATCGTATTGGCCTTATAATAACCCGTATCtatacatttttcaggattttctTGAAGACGAGGATCTTCCTTTGTTTGTTGACTTACCAAATGCAATTATGTACTCGATTCCTTACGATTttcaataacaatattattgtaatatttaaaaagtccaTCCTGCCGATGGACATTACGATACATAGATCACGATACATAGGTCAGTatgattgtatttatatgtgggaaaattctgttttaaatttcCCAATGTTAATAAAGACTATTTAAAGATA
>XM_043240714.1
AGGTAAAcggtttatattttacataaagcgATGACAATGATAAGACTGTTTCCGTGAACGTGAATTATGACAGTGGTCGTGGTAAAACCCTACGATGAAAAAGTGCCGAGCGTTTTTTAATGGAAGAAGAGCGTGCCAGGGGGCGTTGTTGTGGGATATTGTGTGGTATGTGTTATGACCGTCGACTGACAGTAGATTCATCTTTAGAGCCACACGCCCACTGAGAGAGAGGCAGCGGCTCTTTATTCACCGATACCTCGCGCTCTTCTAAATTACCATACAGGCGCGGAGATGTGAGGCGAGCCCGTCGCGTGCCAAACTAGCCGAAATTGGTCAGCATTAGTGGGCAATTCGCCGTGGGATTCGTTCGGTGCATCCGTCAGCCTACATACAGAGCGCGTAACGAGAGACGCAGAATGCCGCTGCTCATAATGTGACTGACCGCGAGCACCGCATCCCAAGCCGCTACGTTCAGCAGGAAGAAGACACTCGGTGATCAACACATCGCTTCTCGTCTCAGGAGGGACAAACGGCAACATGGGGGAGCAGCCCATCTACAGCACCCGGGCACACGTCTTCCAGATAGACCCCAACACAAAGAAGAACTGGATGCCCACCAGCAAGCATGCGGTCACTGTATCTTACTTCTATGACAGTACCAGGAACGTGTACAGGATCATCAGCCTGGACGGATCAAAGGCAATAATAAACAGCACTATCACCCCGAACATGACCTTCACGAAGACGTCTCACAAGTTTGGGCAGTGGGCAGACAGCCGTGCCAACACAGTGTATGGGCTGGGTTTCTCCTCTGAGCATCATCTGGCCAAGTTTGCAGATAAATTTGCAGAGTACAAGGAAGCAGCCAGGATGGCCAAGGAGAAGTCTCTAGAAAAGATGGAGCTGGCAAGTTCGCCCTCTCAGGAATCGCCTGCTGACATTCATTCCCCCCTGACTCCACCCGTCACCGCGGACCTCTGCCGAATCAACGGTGATGACGTCAATCTGTCTGACGTGTCACCCAATTCTGTGCTCCAATCAGACCTTTCCCCGACCACGCCCACCCTTGCACACAGCCCGACTACCAACAAACACTGGGAAGCAGAGCTCGCAGCGCTAAAGAGCAACAATGCCAAGCTCACAGCCGCTCTGCTGGAGTCCACGGCCAACGTCAAACAATGGAAACAGCAGCTAGCAGCTTATCAGGAAGAGGCTGAAAGGCTACACAAACGGGTTTCAGAACTGGAAAGCCAGAGTAGTCAAACCAATGTGATCAAATCCCAGAAAACAGAACTGAACCAAACAATAGAGGAGCTGGAGTGCACATTAAAGGCAAAAGAAGAGGAAATGGTGCAACTGAAAGAAGAAATAGAAAATGCAAAGCAGCTTCAAACTCAGAAAGATGAACTCACCAAAAAGTTAGAGGATACAGATTTGAGGAATAAGGAGCTTGAGGAACAGCTGGCTGATCTGGAGCAACGTCTGGAGTCAAGTCAAGTGGATCAGGAGAACCTCCGCAAGAACCTCAAAACCCTGCTGGAGATTCTGGATGGAAAGATCTTCGAGCTGACAGAGCTGAGAGACAACCTAGCTAAGCTCATAGAGGACAGCTAGACTCCTCCAACTCTTGCCTCAAAACATGACTTTAAAGCcactttcctttcctttttacGAAATACACAGCGCCCGATTCAGGCCGAGAGATTCTGATGTGCTTTCGGACTCTCGTTCACTCACTTACACGGAATGATAAACCTTTGGTTGCacttgattttgtatttttgaggtGGGTTTATTCTTTTCAGTGCCACTGCTACCTACCGAATTTTATTGTCAACAATACACCCGTACTTTTGTCTCTGTTTTCTCCAATTTCCCCCCAAAATAGGCAGCCTGCAAAGAACGTGGCTGCATATAGGCTCCTACTATTTTTTAAAGGTGCTGGTTTCGCGTGCCTGGCTGTTGGCGTTAATGGACGTTTCTTATGCTGCTGAGGACACTACTGAATTACACTGACTGGATCTTCAGTCGTATTTTAAGACTGGATATTCAGAGCCATATGTTGTAGCCAAATGTTATTGGCTTGCCTCTTCCCCGTCATGGAAACTGCCTCAATGTTCAATCAGTCAAAGTTTCAGGATACTCTCAACCGCTGACCTAAAAAGCTCTTGACATTTAGCAGACTTCGAGACGTAGATGTGGCGTATGCTTTAGGCCTGTAATATACACTGAGCAATATTAGTGTGAACGTCTGTATGCCAGATTAGTGCAAGTCACTTCAGTGCATCCGTCAGGTACTTAAACAGTCGAAAGGATGAATTTATGGCCCGTTGTAGGTAACCTTTGGATTTCTCCGATGACCAGTGTAATGCTTTTGGATCGTATTGGCCTTATAATAACCCGTATCtatacatttttcaggattttctTGAAGACGAGGATCTTCCTTTGTTTGTTGACTTACCAAATGCAATTATGTACTCGATTCCTTACGATTttcaataacaatattattgtaatatttaaaaagtccaTCCTGCCGATGGACATTACGATACATAGATCACGATACATAGGTCAGTatgattgtatttatatgtgggaaaattctgttttaaatttcCCAATGTTAATAAAGACTATTTAAAGATA

Function

symbol description
homer1b Predicted to enable G protein-coupled glutamate receptor binding activity. Acts upstream of or within cellular calcium ion homeostasis and muscle structure development. Predicted to be located in synapse. Predicted to be active in several cellular components, including dendrite; plasma membrane; and postsynaptic density. Is expressed in several structures, including basal plate midbrain region; cardiovascular system; musculature system; nervous system; and post-vent region. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 68. Orthologous to several human genes including HOMER1 (homer scaffold protein 1).

NR:

description
homer protein homolog 1-like isoform X1

GO:

id name namespace
GO:0061061 muscle structure development biological_process
GO:0006874 cellular calcium ion homeostasis biological_process

KEGG:

id description
K15010 HOMER; homer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240713.1 False 2348 mRNA 0.46 8 19134372 19151176
XM_043240714.1 True 2652 mRNA 0.46 9 19134372 19156518

Neighbor

gene id symbol gene type direction distance location
lhfpl2b lhfpl2b,LOC107720278,LOC107587511,LOC107699725,LOC107756302,LOC107555493,LOC107703255 coding downstream 3040 19124324 ~ 19131332 (-)
otpb otpb,otp,LOC107720233,LOC107587559,LOC107555478,LOC108423578 coding downstream 51294 19079743 ~ 19083078 (-)
entr1 LOC107720284,LOC107699695,LOC107587560,LOC107555476,LOC107703226 coding downstream 181637 18949562 ~ 18952735 (-)
snapc4 LOC107699680,LOC107720210 coding downstream 185013 18938322 ~ 18949359 (-)
card9 LOC107699720,LOC107756300,LOC107555475 coding downstream 196407 18932700 ~ 18937965 (-)
serinc5 serinc5,LOC107756307,LOC107699732,LOC107555497,LOC107703261 coding upstream 39500 19196018 ~ 19216739 (-)
cdk7 cdk7,LOC107756278,LOC107720222,LOC107703229,LOC107699696 coding upstream 61217 19217735 ~ 19221166 (-)
LOC122345207 LOC107720271,LOC107699734,LOC107587503,LOC107756310,LOC107703263 coding upstream 140781 19297299 ~ 19313145 (-)
erap2 erap2,LOC107699735,LOC107756311,LOC107703265,LOC107720206 coding upstream 157630 19314148 ~ 19323539 (-)
rgmb rgmb,LOC107555502,LOC107756312,LOC107720270,LOC107699736,LOC107703266,LOC107587502 coding upstream 171634 19328152 ~ 19340602 (-)
G37776 NA non-coding downstream 1228 19132813 ~ 19133144 (-)
G37774 NA non-coding downstream 11064 19123025 ~ 19123308 (-)
G37757 ckmt2b,ckmt2,LOC107720280,LOC107756255 non-coding downstream 58598 19068914 ~ 19075774 (-)
G37637 NA non-coding downstream 320601 18813564 ~ 18813771 (-)
G37571 NA non-coding downstream 742724 18373317 ~ 18391648 (-)
G37792 NA non-coding upstream 67834 19224352 ~ 19225429 (-)
G37799 NA non-coding upstream 125347 19281865 ~ 19282092 (-)
G37800 NA non-coding upstream 125859 19282377 ~ 19282691 (-)
G37801 NA non-coding upstream 130109 19286627 ~ 19286848 (-)
G37877 NA non-coding upstream 349403 19505921 ~ 19510282 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 1783992 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 2274441 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 2421205 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 2501251 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 2755857 16376266 ~ 16378515 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 18945 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 708501 19865019 ~ 19935576 (-)
G38058 NA other upstream 895141 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 969071 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 1238213 20394731 ~ 20396734 (-)

Expression


Co-expression Network