tmem248 (tmem248,LOC107714897,LOC107572429,LOC107691774,LOC107689376,LOC107587695,LOC107710724)


Basic Information

Item Value
gene id tmem248
gene name tmem248,LOC107714897,LOC107572429,LOC107691774,LOC107689376,LOC107587695,LOC107710724
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22215339 ~ 22227188 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240728.1
AACACAGAAGACATCTACAGTCGGTTTCCGTCAGCCAGCGGCTCGCTATAGACTCGAAGGCCAAGTAAAACCGCGTTTTGAGAATATAGCGCACGGGCGAATAATGGGAAGGGGCGTTGTGCGCTCTTATACCGCTGTCAGCTGTGTGTTTGTCGCTCAGGCCCGTTAGGCTCCAGTCAGTTAGCTTTAGCCGCCTGCAGCTGTCGTGCGCGCGCACTCGCGGGGGCAAAATGGTGTTATTGTTGAATCCACTGGAGAATCTAAAGACCTACATAAGTAACCGTCCACCGCTGGTCATTTTTATGGTCAGCGTCAGCGCTGTGGCCATCGCTTTCCTCACTATAGGATACTTCTTTAAGATTAAGGAAATCAAATCTCCTGAAATGACTGAGGATTGGAACACGTTCCTCCTTCGATTCAATGAGCTTGACTTTTGCATCTCAGAAAACGAGACCCTCAAACACAGCTTGAACGAGTCCATCACTCCAGAGAGCACAGTGACCAGCAGTCAAACGCGATCCAGCACCCAGTCCCCTCCCCTGTTAGAGGACCCCGGGCCGATCAACATCTCTGTGCCCATCACATTGACCCTGGATCCGCTGAGGCCGTTTGGGGGCTACTCGCGCAATATTACTCACCTCTATGCCAGTGTGCTTGGGCAGCAAGTTGGCCTTGCTGGCAGAGAGGCCCATGAAGAGATGAACATCACATTCACTCTGCCGGTAGCCTGGAACTCAGATGAGTGCGTTCTGCATGGTCGTTGTGAGCAAATGGTCTTCAGCACCTGTATGACCATCACAGCAGCTAGTAATGTCTTCCCAGTCACAGTGCAGCCGCCTCACTGTGTCCCAGAGACCTACAGCAATGCCACATCCTGGTACAAGATTTTCACCACAGCACGAGACTCAGACACTAAGTACACACAGGAGTACAACCCGTTCTGGTGTTACAAAGGTGCCATTGGGAAGGTGTATCACACACTCAATCCCAAGCTCACTGTCATCGTTCCAGATGACGATCGCTCTCTCATTAACCTGCACCTCATGCACACCagctacttcctgtttgtgaTGGTCATCACAATGTTCTGCTATGCAGTCATCAAGGGCAGGCCTGGCAAAGTTCGACAGAACAACCCAGATTTCTGTCCAGAAAAGGTGGCCTTGTCTGCGGGATAAATGGGGGTGAAGGTGAACATCTGAACCGAAGCATATCGGAAAGGGAAGTGAGAAAACTACATGTTGCCTACTGAACCCAAGagaagggtgcaaaaaaaaaaaaaaagctctgtgAATGCATTACTCTGCAATGTTGGGTCATTCCAACCAAAGACTTTTAAGTGCCTGTATCTACTGTGTAAATAATGATAGGACTCTTAAATTCAGTACAGAAGCAGTCTGCCTGAGCTTCCCCCTGCACCCTGTGCCATCCTGTAAATGTTCAGTATATCCAGTATCAACAGAGGACAGTGTTTGGCTAGAAATGCTCAGATGGAAAATATCACCTCTACTAAATCTGATCCTTTTTCACGCTCGCTCTTTGTGTTCTTGATCGGATCACTTCCTGTGTCATTCTATTTCTCTGGAGGTGACCTTTTGCCTTCTCATTCCTCTCGTGTCTTTGTCTTAACCGACCCTTTCGTATGTGTCCATTGCGGATTCTGCAGTGGCATTTCTTTTGATTCCTCCTTTGAGGACGGGCAGATGCGTGGATCTCTGCCATGTACCATGATCAACCTGCTGGTCATGATCTTTGGACGAGTTCCACTAGAAGTGACAGCAGGCTTCCGTACGACACGCTTCTTTTATCATCGAACCCACGCCGGTTTTATTGCGAACGTGTCTAAGTGAGAAGCCCGAGTGGAGGTTGGACACGGCGtttgaataaattacttttaaaagcaaataaaaccacCAGACATCTTACTCGGAATGTCACCGTGTCGGCGAGTCGAGATAAAAGGCCTGTTCTCGGATCGATGGATTTGTGTGTTGAAATCTTAATGAACGCAATGATTAATGGCTTTGGGCTTCACGTCTCCGTTTCTAGACACttcaaatgaatgtatttgtaaaatcagcaaattaacAGCAGTGATGCAGCATCGATCTCTTGTACATGTAACattgtagttaaaaaaaaaaatgtaaatcattatTGTAGATATTTTTTGTAATCGCATTACTttccagttttgtttttttacaaaaccatTTCTACCTTCATCCATTGTGTTTCTtgcctttttttgtgtttcatgctTCATTTGATACTTAAGCAACGCCGGTTTCGTTTTAATCTTAGTGCAATATCTGATCTGTCTTTTGGCCTTCCAAACCTTTAGTTATTCTTATTGTCATTAGGTTTTCATTTCCACAGAGTGAAATGCATATCGTGCGTCATATCGCGTGACACGTATTACGAGAGAGCGCTTTCCTCCTCCATTCTGTCTAGTTCAAGCTTTTAAGCATCTTTGTCCTCTCCACCTACAAAGTCCACTGCTCTTTAGCGACAAACCCattttcccatcatgccttgcTTAATTACGGCCCTCTTAAGCTGCATCAGTCACGGTTCATCAGCACTCCCCTTCTCTCGCCCTATATTAAAGCCCATAATAAACACGCATCCAACCACTAATGTGCCTTTGCACGGTCTCACCCATATTCGCCACACTTTGATCCGTTCAACCTGCTGAATTCATTTTGAGTGTGTACTGCTCACAGTGACTTCCTCCCCATTTCATATCCAATTCGGAGTCAAAACCGCAGTAACAGTTGGGAAAGATAGAAAttcatttgtgctttttctgtttatGCATAAGAGCAAACGCTTGTTTGTTTTACTCGCCAAACCCATCCTACGGTAACTAGATTTTCGAGTGTTAATTATGCTTTGAAACCTCTTTGAATAGCAATATCTTGCATTTGGGACGTTAATTTGTACGCTCTACTGAAgcgtttgtgctttttttttttttttttgagacctTTGCTCACGTCTAGTTTCTTTTTGGGATCGTGAGATGACTTTAAACCGTTCTGATGGCTGTAGGAGCCGTTCTGATAGCAAAAGTATTCTGCTtcataatgcataatttctGCGTTCATTAAAGTTGGCCTTTCAGTGCTCCTGGAGGACAATGGAAAATGACAACGAATTCCATGGATGCTGCCTGATGCTCAGATCATATTGATCTTCCCCCCCCTTGTCCTTCCTTTGGGCTTGTAGCATTTGAGTGAAGTGTATTTGTAAGTGGTAGAAGGTCCTTTCCTTGTCCGAACTTGCGGCGCGAACTCTCGCCGGTTTCCTCGTGTCGGCGAGAGTTGTCGCAAGCCCTTCGACTCGTCATGATGCATGATTGTAAATGTTCTACCTGCTGACCTGTTTGTATGAGGACAATCcctctgtttttgttctgtttgtaaAATATCGTAGGCACAtgctttgctgaataaaatctaaGAAAAATGTC

Function

symbol description
tmem248 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM248 (transmembrane protein 248).

NR:

description
transmembrane protein 248 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240728.1 True 3475 mRNA 0.45 7 22215339 22227188

Neighbor

gene id symbol gene type direction distance location
LOC122345718 doc2b,LOC107587692,LOC107710708,LOC107689386,LOC107714896 coding downstream 3804 22137839 ~ 22211535 (-)
doc2b doc2b,LOC107681901,LOC107685552,LOC106603746,LOC107587692 coding downstream 99314 22045299 ~ 22116025 (-)
castor2 gatsl2,LOC107685562,LOC107587690,LOC107595468,LOC107681899 coding downstream 179025 22020667 ~ 22036314 (-)
polr2j polr2j,LOC107587688,LOC107595521,LOC107681903 coding downstream 213724 21999494 ~ 22001615 (-)
alkbh4 alkbh4,LOC107712145,LOC107710716,LOC107681883 coding downstream 215927 21997636 ~ 21999412 (-)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 3692 22230880 ~ 22240821 (-)
tmem132e tmem132e,LOC107691770,LOC107689377,LOC107567383 coding upstream 80000 22307188 ~ 22555178 (-)
dtx2 dtx2,LOC107600799,LOC107691768,LOC107709752,LOC107689380 coding upstream 493540 22720728 ~ 22736661 (-)
gtf2ird1 gtf2ird1,LOC107600764,LOC107709753 coding upstream 510895 22738083 ~ 22759778 (-)
clip2 clip2,LOC107709754,LOC107744329 coding upstream 534523 22761711 ~ 22790807 (-)
LOC122344815 NA non-coding downstream 174072 22038360 ~ 22041267 (-)
LOC122346224 NA non-coding downstream 175305 22039901 ~ 22040034 (-)
G38543 NA non-coding downstream 205232 22008886 ~ 22010107 (-)
G38523 NA non-coding downstream 338754 21867615 ~ 21876585 (-)
G38521 NA non-coding downstream 347878 21867128 ~ 21867461 (-)
G38634 NA non-coding upstream 564502 22791690 ~ 22793053 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding upstream 646783 22873971 ~ 22876437 (-)
G38747 NA non-coding upstream 809269 23036457 ~ 23037470 (-)
G38767 NA non-coding upstream 1118401 23345589 ~ 23345797 (-)
G38769 NA non-coding upstream 1130386 23357574 ~ 23358147 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 331317 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 389234 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 595756 21612688 ~ 21619583 (-)
G38359 NA other downstream 846291 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 1279242 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 900024 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 1375048 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 1524692 23751880 ~ 23756588 (-)
G38973 NA other upstream 1660115 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 1752476 23979664 ~ 23997739 (-)

Expression


Co-expression Network