svopa (svop,svopa,LOC107696058)


Basic Information

Item Value
gene id svopa
gene name svop,svopa,LOC107696058
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12808510 ~ 12819678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240731.1
GGAGTCAATGAAATTCATGGGAGGTGTATTGTCTTCATCATCTCCGAGAGGGTATTCGGTGCTTTGCAGGGATCCAGCGCCAGCGAgcgacgcgacgcgacgcgacaGGCGCAGGAATCATGGACGCTCCGCAGCGCGCCGCCCCTCTCTGAGCTCTTCTCTGTCCTCACGCCCGCGGTGCTGAAATCAGCCTCGACCCGACAGCAATGTAACAGCAATGAGACAAAGACACCGGCAGCCCGACGAACAGACCGATAATGGACGATGATTTGTTTCAGTTAAGACAGCTCCCAGTGGTGAAGTTTCGGCATACAGGTGAAAGCACTCGCTCAGAGGATGAGTGCGGCGGCAGGGAAGAGGCTTTGCAGGTGGAGGGAGGACGGATGAATATGGAGTCTGTTTCCCTGGCCGATGGTGCTCCGGTGCCTCGGGAATTTGCCAACCCCACTGACGATACCTTCATGGTTGAGGATGCAGTGGAAGCCATTGGCTTTGGGACATTCCAGTGGAAACTCTCCATCCTGACCGGACTTTCCTGGATGGCCGACGCCATGGAGATGATGATTCTCAGTATATTGGCCCCTCAACTGCACTGTGAGTGGGCACTGCCCAGCTGGGAGGTGGCACTGCTAACTTCGGTAGTATTTATTGGAATGATGATCAGTTCTTCATTATGGGGAAACATATCTGATAAATATGGGAGAAAAACAGGTTTAAAAATGAGTGTATTATGGACCCTGTTTTACGGCCTCCTCAGTGCATTTGCACCTATATACGGATGGATCCTGTTCCTCAGAGCTCTGGTGGGCTTCGGCATTGGAGGGGCTCCACAATCAGTAACATTGTATGCTGAGTTTCTCCCCATGCGGTCCAGAGCCACTTGCATTCTGTTGATAGAGATATTCTGGGCACTGGGTACAGTATTTGAAGTGCTGCTGGCTATTTTGGTGATGCCAACTTTGGGCTGGCGCTGGCTGCTGGCCCTCTCCACCATTCCGCtcttcatttttgcttttctgtgCTTTTGGCTGCCAGAAAGCGCTCGTTATGATGTCCTGACAGGAAACCAGGAGAAGGCTCTAAACACACTCAAACGCATTGCAACAGAGAATAATGTCCCCATGCCGCTGGGAAAACTCATAGTGGCCAGACAGgaGGACCGGGGGAAAATTCAAGACCTTTTTTCTCCACACTTCCGCTGGACCACAGTTCTGCTTTGGTTCATATGGTTCTCTAATGCATTCTCATATTATGGTGTGGTTTTGCTGACCACTGAGCTTTTCCAGGAGGGAGGCGCCTGTGGTAGGACAAAGGGCAGTAAAATGGAGCCAAGTTGCAGTTTGGAGTGCAAATATCTGAATTCAGATGATTACAAAGACCTTCTATGGACCACACTTTCTGAGTTTCCTgGCCTGCTGGTGACCCTGTGGGCGATTGATCGATTAGGGAGAAGGAAGACTATGGCACTGTGTTTCTTTGTCTTCTCCCTCTGCATTGTGCCGCTCTACGGCTGTGTGGGAAGGACGTCTTTGACGGTATTTATATTCATTGCGAGGGCTTTTATCGCCGGAGGTTTCCAGGCTGCATATGTGTACACCCCTGAGGTGTATCCCACGGCCACGAGGGCGCTGGGTTTGGGCACCAGTAGTGGGATGGCTCGGGTTGGAGCTCTCATAACACCATTTGTGGCACAGGTGATGCTGGAATCATCTGTGTACCTGACTCTGTCTGTGTACTGTTGCTGCTGTTTGCTGGCTGCCATCGCTTCCTGTGCCCTGCCCATCGAGACCACAGGACGAGGCCTGCAGGAGTCCAGCCACAGAGAGTGGGGTCAGGAGATGATGGGACGGGCCTCAGACAACAGCCCTGGAGGGATTCCACATTCCAGCTCTGGATCACAGGACTAAGAAACACCCCAGATAGGTTTGAAAAGACTTTGTAGAAGAAATTGGGGttcttttctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcaatgtgtgtgtgtc
>XM_043240732.1
TTGGGGGAGTCAATGAAATTCATGGGAGGTGTATTGTCTTCATCATCTCCGAGAGGGTATTCGGTGCTTTGCAGGGATCCAGCGCCAGCGAgcgacgcgacgcgacgcgacaGGCGCAGGAATCATGGACGCTCCGCAGCGCGCCGCCCCTCTCTGAGCTCTTCTCTGTCCTCACGCCCGCGGTGCTGAAATCAGCCTCGACCCGACAGCAATGTAACAGCAATGAGACAAAGACACCGGCAGCCCGACGAACAGACCGATAATGGACGATGATTTGTTTCAGTTAAGACAGCTCCCATACCTTCATGGTTGAGGATGCAGTGGAAGCCATTGGCTTTGGGACATTCCAGTGGAAACTCTCCATCCTGACCGGACTTTCCTGGATGGCCGACGCCATGGAGATGATGATTCTCAGTATATTGGCCCCTCAACTGCACTGTGAGTGGGCACTGCCCAGCTGGGAGGTGGCACTGCTAACTTCGGTAGTATTTATTGGAATGATGATCAGTTCTTCATTATGGGGAAACATATCTGATAAATATGGGAGAAAAACAGGTTTAAAAATGAGTGTATTATGGACCCTGTTTTACGGCCTCCTCAGTGCATTTGCACCTATATACGGATGGATCCTGTTCCTCAGAGCTCTGGTGGGCTTCGGCATTGGAGGGGCTCCACAATCAGTAACATTGTATGCTGAGTTTCTCCCCATGCGGTCCAGAGCCACTTGCATTCTGTTGATAGAGATATTCTGGGCACTGGGTACAGTATTTGAAGTGCTGCTGGCTATTTTGGTGATGCCAACTTTGGGCTGGCGCTGGCTGCTGGCCCTCTCCACCATTCCGCtcttcatttttgcttttctgtgCTTTTGGCTGCCAGAAAGCGCTCGTTATGATGTCCTGACAGGAAACCAGGAGAAGGCTCTAAACACACTCAAACGCATTGCAACAGAGAATAATGTCCCCATGCCGCTGGGAAAACTCATAGTGGCCAGACAGgaGGACCGGGGGAAAATTCAAGACCTTTTTTCTCCACACTTCCGCTGGACCACAGTTCTGCTTTGGTTCATATGGTTCTCTAATGCATTCTCATATTATGGTGTGGTTTTGCTGACCACTGAGCTTTTCCAGGAGGGAGGCGCCTGTGGTAGGACAAAGGGCAGTAAAATGGAGCCAAGTTGCAGTTTGGAGTGCAAATATCTGAATTCAGATGATTACAAAGACCTTCTATGGACCACACTTTCTGAGTTTCCTgGCCTGCTGGTGACCCTGTGGGCGATTGATCGATTAGGGAGAAGGAAGACTATGGCACTGTGTTTCTTTGTCTTCTCCCTCTGCATTGTGCCGCTCTACGGCTGTGTGGGAAGGACGTCTTTGACGGTATTTATATTCATTGCGAGGGCTTTTATCGCCGGAGGTTTCCAGGCTGCATATGTGTACACCCCTGAGGTGTATCCCACGGCCACGAGGGCGCTGGGTTTGGGCACCAGTAGTGGGATGGCTCGGGTTGGAGCTCTCATAACACCATTTGTGGCACAGGTGATGCTGGAATCATCTGTGTACCTGACTCTGTCTGTGTACTGTTGCTGCTGTTTGCTGGCTGCCATCGCTTCCTGTGCCCTGCCCATCGAGACCACAGGACGAGGCCTGCAGGAGTCCAGCCACAGAGAGTGGGGTCAGGAGATGATGGGACGGGCCTCAGACAACAGCCCTGGAGGGATTCCACATTCCAGCTCTGGATCACAGGACTAAGAAACACCCCAGATAGGTTTGAAAAGACTTTGTAGAAGAAATTGGGGttcttttctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcaatgtgtgtgtgtc

Function

symbol description
svopa Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SVOP (SV2 related protein).
svop Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in synaptic vesicle.

NR:

description
synaptic vesicle 2-related protein

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240731.1 True 2017 mRNA 0.51 16 12808510 12819673
XM_043240732.1 False 1861 mRNA 0.50 15 12808510 12819678

Neighbor

gene id symbol gene type direction distance location
ssh1a ssh1,LOC107727158,LOC107597277 coding downstream 14407 12762580 ~ 12794103 (-)
coro1ca coro1c,coro1ca,LOC107741221,LOC107696062,LOC107595940,LOC106584990 coding downstream 52360 12716051 ~ 12756150 (-)
selplg NA coding downstream 93979 12712197 ~ 12714531 (-)
tmem119a tmem119,tmem119a,LOC107597281,LOC107727157,LOC107741302,LOC107696065 coding downstream 96456 12708388 ~ 12712054 (-)
sart3 sart3,LOC107654630,LOC107597276,LOC107741219,LOC107595944 coding downstream 106565 12685058 ~ 12701945 (-)
isg15 LOC107654605,LOC107597356,LOC107741227,LOC107595933 coding upstream 11988 12831666 ~ 12832738 (-)
ptcd2 ptcd2,LOC107718650,LOC107700924,LOC107655927,LOC107757526 coding upstream 16278 12835956 ~ 12840936 (-)
map1b map1b,LOC107596172,LOC107655889,LOC107757527,LOC107597920 coding upstream 24573 12844251 ~ 12863698 (-)
ttc33 ttc33,LOC107596169,LOC107757511,LOC107655901 coding upstream 74906 12894584 ~ 12911763 (-)
eda2r LOC107598184 coding upstream 123647 12943325 ~ 12954845 (-)
G35966 wscd2,LOC107597274,LOC107743343,LOC107696066,LOC107595945 non-coding downstream 169133 12637190 ~ 12639377 (-)
LOC122345380 NA non-coding downstream 201572 12602216 ~ 12606938 (-)
G35949 NA non-coding downstream 270708 12532390 ~ 12537802 (-)
G35928 NA non-coding downstream 292960 12463906 ~ 12515550 (-)
G35923 NA non-coding downstream 357745 12448214 ~ 12450765 (-)
LOC122345905 NA non-coding upstream 60383 12880061 ~ 12884157 (-)
G36004 fbp1b,LOC107718665,LOC107655925,LOC107596168,LOC107757529,LOC107596723 non-coding upstream 93948 12913626 ~ 12916814 (-)
G36009 NA non-coding upstream 105065 12924743 ~ 12926462 (-)
G36012 NA non-coding upstream 113793 12933471 ~ 12933779 (-)
G36048 NA non-coding upstream 235891 13055569 ~ 13056705 (-)
G35936 NA other downstream 302552 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 488825 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 639100 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 992566 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 1155883 11583780 ~ 11652627 (-)
G36047 NA other upstream 234166 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 759383 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 834616 13654294 ~ 13699226 (-)
G36298 NA other upstream 897446 13717124 ~ 13718543 (-)
G36336 NA other upstream 998064 13817742 ~ 13818942 (-)

Expression


Co-expression Network