LOC122346073 (LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161)


Basic Information

Item Value
gene id LOC122346073
gene name LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12803789 ~ 12807351 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240741.1
TATAATATATGAAGTATACCTTGAATGCAGTGTACTGCAACTCTGCtgtatgcataaatgtaaatgtgtggaTTATTTCCAACCTGACATTACATGCAGCGCATAAACTATTAAGTTATGAATTAGGATTTTCAAGCAATAAAAACAACTCGAGCTCTATAACCTTGTTAGTTGTCATGATACATTTTAACTTTGTAATTGTGTCTATGTTGGGTGGACATAAGCCTTAATAAAACAACTTAAGCCTTTCCCGTGACAATGCAAACATATGGCAGCATTATGTATTCACTGGTGGATGGTTCAGAATACACAGTTAGCAGGCATGAGGGTGTGCATCATTGGAGCGGGGGTCATCGGCCTCTCCACCGCTCAGAGCATCTACCAGCACTTCCACCACAGGATCACCCCCCTCACCATAGAGGTGTATGCTGACGTCTTCACTCCACTCACCACCAGCGACGGGGCAGCCGGGCTCTGGCAGCCGTATCTCTACGACAAGGGAAACGTGCAAGAAACTCAATGGAACAAAGAGACGTTTGACTATCTGCTAAGCTGGCTCAGCTCTCCAGATTCAGTGAAAATGGGAATCTTCCTTCAGTCTGGCTACAATCTGTGCACTGAAACCTTGCCGGATCCCTCATTTAAAAACGCAGTGTTGGGTTTTCGTCAGCTGACTGAACGTGAACTGGATATGTTCCCGGGATACAGTTTTGGTTGGTTTAACACTGCTCTCATGATTGAAGGAAAGACATACCTGCCCTGGCTTATGGACTGGTTAAGTCAAAGAAAGGTCAAGTTTTATCACAGAAAGATTGGTTCATTTAAAGAGTTGGCAGATATTGGTGCTGATGTTGTCATCAACTGCTCCGGGATCCGATCAGGAGACCTCCAGCCTGATCCCGAGCTCAAACCAGGCAGAGGACAAATTATTAAGGTAGACGCTCCCTGGTTGAAACACTGGATCATCACACACAATTCCTCAACAGGAGTCTATAACTCACCGTACATCATTCCTGGGAGCCGTTTAGTCACTGTGGGTGGAGTTTTCCAAGTAGGAAACTGGAATCTGCAGAACAGTTCTGTTGACCATAAAGGAATCTGGGAAGAGGCCTGCAAGCTTGAGCCCAGTCTACAGCATGCGCGGATAGTAGAGGACTGGACTGGACTCAGACCCGCTCGCAGCAAAGTTAGACTGGAGAGAGAGACCATACGATCTGGACCAGCCTCGTTTGAGGTCATTCATAACTACGGACATGGGGGTTTCGGACTGACCATCCATCGTGGATGTGCTGAGGAAGCTGCTCGTCTCTTTGGACAGATCCTGGAGCAGAAAGGCCTGCTATCACACTCTAAGTCACGTCTCTAATAAAGATCTATGCCTCTTGAATCTTATCTACAGCATCAGTTCCTATTCTCACTAATCTAATAACCATTGTCATACTGATTGATAATTAATATTCagaatttaataaatttgtCTGCATTTATCTACACTAAGTCATAATAAAGATACATATACTCA
>XM_043240742.1
CGCCACCGCAACGTCACAACTGACGTTACGTAACGTGGGAAAAAGTTAATTTGTAAGAGTTGCGACCTGTCGCTGAACGGTTCTTGCAAGAGACAAGATAAGGACAACGTCGATCTCTTTTTGGAGGTAACAAGACAAAAAGTGTGTTAGCAGGCATGAGGGTGTGCATCATTGGAGCGGGGGTCATCGGCCTCTCCACCGCTCAGAGCATCTACCAGCACTTCCACCACAGGATCACCCCCCTCACCATAGAGGTGTATGCTGACGTCTTCACTCCACTCACCACCAGCGACGGGGCAGCCGGGCTCTGGCAGCCGTATCTCTACGACAAGGGAAACGTGCAAGAAACTCAATGGAACAAAGAGACGTTTGACTATCTGCTAAGCTGGCTCAGCTCTCCAGATTCAGTGAAAATGGGAATCTTCCTTCAGTCTGGCTACAATCTGTGCACTGAAACCTTGCCGGATCCCTCATTTAAAAACGCAGTGTTGGGTTTTCGTCAGCTGACTGAACGTGAACTGGATATGTTCCCGGGATACAGTTTTGGTTGGTTTAACACTGCTCTCATGATTGAAGGAAAGACATACCTGCCCTGGCTTATGGACTGGTTAAGTCAAAGAAAGGTCAAGTTTTATCACAGAAAGATTGGTTCATTTAAAGAGTTGGCAGATATTGGTGCTGATGTTGTCATCAACTGCTCCGGGATCCGATCAGGAGACCTCCAGCCTGATCCCGAGCTCAAACCAGGCAGAGGACAAATTATTAAGGTAGACGCTCCCTGGTTGAAACACTGGATCATCACACACAATTCCTCAACAGGAGTCTATAACTCACCGTACATCATTCCTGGGAGCCGTTTAGTCACTGTGGGTGGAGTTTTCCAAGTAGGAAACTGGAATCTGCAGAACAGTTCTGTTGACCATAAAGGAATCTGGGAAGAGGCCTGCAAGCTTGAGCCCAGTCTACAGCATGCGCGGATAGTAGAGGACTGGACTGGACTCAGACCCGCTCGCAGCAAAGTTAGACTGGAGAGAGAGACCATACGATCTGGACCAGCCTCGTTTGAGGTCATTCATAACTACGGACATGGGGGTTTCGGACTGACCATCCATCGTGGATGTGCTGAGGAAGCTGCTCGTCTCTTTGGACAGATCCTGGAGCAGAAAGGCCTGCTATCACACTCTAAGTCACGTCTCTAATAAAGATCTATGCCTCTTGAATCTTATCTACAGCATCAGTTCCTATTCTCACTAATCTAATAACCATTGTCATACTGATTGATAATTAATATTCagaatttaataaatttgtCTGCATTTATCTACACTAAGTCATAATAAAGATACATATACTCA
>XR_006251084.1
TTTATAATATATGAAGTATACCTTGAATGCAGTGTACTGCAACTCTGCtgtatgcataaatgtaaatgtgtggaTTATTTCCAACCTGACATTACATGCAGCGCATAAACTATTAAGTTATGAATTAGGATTTTCAAGCAATAAAAACAACTCGAGCTCTATAACCTTGTTAGTTGTCATGATACATTTTAACTTTGTAATTGTGTCTATGTTGGGTGGACATAAGCCTTAATAAAACAACTTAAGCCTTTCCCGTGACAATGCAAACATATGGCAGCATTATGTATTCACTGGTGGATGGTTCAGAATACACAGTTAGCAGGCATGAGGGTGTGCATCATTGGAGCGGGGGTCATCGGCCTCTCCACCGCTCAGAGCATCTACCAGCACTTCCACCACAGGATCACCCCCCTCACCATAGAGGTGTATGCTGACGTCTTCACTCCACTCACCACCAGCGACGGGGCAGCCGGGCTCTGGCAGCCGTATCTCTACGACAAGGGAAACGTGCAAGAAACTCAATGGAACAAAGAGACGTTTGACTATCTGCTAAGCTGGCTCAGCTCTCCAGATTCAGTGAAAATGGGAATCTTCCTTCAGTCTGGCTACAATCTGTGCACTGAAACCTTGCCGGATCCCTCATTTAAAAACGCAGTGTTGGGTTTTCGTCAGCTGACTGAACGTGAACTGGATATGTTCCCGGGATACAGTTTTGGTTGGTTTAACACTGCTCTCATGATTGAAGGAAAGACATACCTGCCCTGGCTTATGGACTGGTTAAGTCAAAGAAAGGTCAAGTTTTATCACAGAAAGATTGGTTCATTTAAAGAGTTGGCAGATATTGGTGCTGATGTTGTCATCAACTGCTCCGGGATCCGATCAGGAGACCTCCAGCCTGATCCCGAGCTCAAACCAGGCAGAGGACAAATTATTAAGGTAGACGCTCCCTGGTTGAAACACTGGATCATCACACACAATTCCTCAACAGGAGTCTATAACTCACCGTACATCATTCCTGGGAGCCGTTTAGTCACTGTGGGTGGAGTTTTCCAAGTAGGAAACTGGAATCTGCAGAACAGTTCTGTTGACCATAAAGGAATCTGGGAAGAGGCCTGCAAGCTTGAGCCCAGTCTACAGCATGCGCGGATAGTAGAGGACTGGACTGGACTCAGACCCGCTCGCAGCAAAGTTAGACTGGAGAGAGAGACCATACGATCTGGACCAGCCTCGTTTGAGTGATTGCATCATCCAGTGCAGACAGTTTCTAGTGTGATAGAGCAGGAGCGAAAATGGTTACATCCAGTGtagaaacagGTCATTCATAACTACGGACATGGGGGTTTCGGACTGACCATCCATCGTGGATGTGCTGAGGAAGCTGCTCGTCTCTTTGGACAGATCCTGGAGCAGAAAGGCCTGCTATCACACTCTAAGTCACGTCTCTAATAAAGATCTATGCCTCTTGAA

Function

NR:

description
PREDICTED: D-amino-acid oxidase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0003884 D-amino-acid oxidase activity molecular_function

KEGG:

id description
K00273 DAO, aao; D-amino-acid oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240741.1 True 1522 mRNA 0.44 11 12803954 12807351
XM_043240742.1 False 1355 mRNA 0.47 11 12803789 12807351
XR_006251084.1 False 1467 transcript 0.46 12 12803952 12807216

Neighbor

gene id symbol gene type direction distance location
LOC122346075 LOC107654625,LOC107597279,LOC107741224,LOC107727161,LOC107696048 coding upstream 919 12798124 ~ 12802870 (+)
dao.3 LOC107727161,LOC107654625,LOC107597279,LOC107741224 coding upstream 6351 12794219 ~ 12797438 (+)
ficd ficd,LOC107741218,LOC107711781,LOC107597275 coding upstream 120062 12680681 ~ 12683727 (+)
wscd2 wscd2,LOC107597274,LOC107743343,LOC107741214,LOC107696066 coding upstream 164515 12595277 ~ 12639274 (+)
si:ch211-225b11.1 si:ch211-225b11.1,LOC107743342,LOC107597273,LOC107654634,LOC107595947,LOC107696069,LOC107741213 coding upstream 224078 12564192 ~ 12579711 (+)
usp30 usp30,LOC107727160,LOC107741225,LOC107597278,LOC107696057,LOC100537262 coding downstream 13254 12820605 ~ 12826178 (+)
pxmp2 pxmp2,LOC107597355,LOC107595932,LOC107727154 coding downstream 19239 12826590 ~ 12829604 (+)
ptger4b ptger4b,LOC107700922,LOC107757528,LOC107596171,LOC107596756,LOC107655926 coding downstream 78878 12886229 ~ 12892279 (+)
fbp1b fbp1b,LOC107700920,LOC107718665,LOC107596168,LOC107655925,LOC107757529 coding downstream 105304 12912655 ~ 12916020 (+)
erlin2 erlin2,LOC107655923,LOC108443303,LOC107718651,LOC107596165,LOC107700919,LOC107757530 coding downstream 108819 12916170 ~ 12926498 (+)
G35847 NA non-coding upstream 35239 12767948 ~ 12768550 (+)
G35843 NA non-coding upstream 131583 12567184 ~ 12672206 (+)
LOC122345920 NA non-coding upstream 156701 12645284 ~ 12647088 (+)
G35864 NA non-coding upstream 162144 12640267 ~ 12641645 (+)
G35855 NA non-coding upstream 252609 12548666 ~ 12551180 (+)
G35903 NA non-coding downstream 74909 12882260 ~ 12882512 (+)
G35904 NA non-coding downstream 77654 12885005 ~ 12885284 (+)
G35905 NA non-coding downstream 77980 12885331 ~ 12885934 (+)
G36062 NA non-coding downstream 301281 13108632 ~ 13108853 (+)
LOC122345423 NA non-coding downstream 492404 13299755 ~ 13312652 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 98544 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 274999 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 548117 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 860679 11924228 ~ 11943110 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other upstream 1151106 11638516 ~ 11652683 (+)
ins ins,LOC107596207 other downstream 1176746 13984097 ~ 13985706 (+)
G36495 NA other downstream 1483069 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 1492692 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 1525672 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 1540211 14347562 ~ 14349991 (+)

Expression


Co-expression Network