LOC122346081 (LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695)


Basic Information

Item Value
gene id LOC122346081
gene name LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2178583 ~ 2207545 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240752.1
ATGTCACTCAACATCTTGCTCCGCCCACGCCGTCAGCCCGATGGCCAGAGAAAAACTATCTGGGTGTATAAATCTAAGAACCGAGCAGGTGAGAAAGGTGATCGAGGACCTCCTGGACCGCCATCATACAGGAATGGGCAGTTCCCAGAAATAGGTGGAATAGGACCAAAAGGAGACAGTGGTGAGCCAGGATACCCTGGCTCTAAAGGAGACAGAGGACTGCCAGGTATTCAGGGGCCACCTGGTTTACCAGGTCCTGCAGGAATTGGAGGTCCAGGTCCTTCCGGTCCACCAGGTTTAcctggagagagaggagaaaaaggCGATGAGGGACAACCTGGAATCTCTCACCCTGGACCACCTGGGAGAGCAGGTCCAACAGGAGTTCAaggagtcccaggacctcctgGTCCCCCAGGAATATTTAACGGCGACATAGAATGTAATCGTGGTCCTCCTGGTACTCCAGGCCAGCAGGGGGAGCGAGGATTTACAGGAGAAACGGGACAGAAAGGTCAAAAAGGAGAGACATGTGCCAGTTGTTTCACTAATGGAAACCCCATCCCAGGACCCCCAGGGTTTCCAGGTCCTCCTGGAAATCCAGGCTCACCTGGTTTTCCTGGAACTAAAGGAGACAGAGGATTCCCGGGAGGGCCAGGGCTCATGGGCCCACCTGGAATACCAGGACCTAAGGGTCTCCCTGGAGTCCCTGGAGAGAAGGGCGACCCAGGCGATGCACTCTCTGTTCCGGGTGTGAAAGGAGAAAAGGGAGACACAGGCTTTCCTGGACCAGGTCTGCCGGGACTTGATGGAAGACCTGGTCGTGATGGAGTTCCTGGTCCCCCAGGCCTCAGAGGACCACCCGGTTCGGCATTTGTGAAAGGCACACAAGGTCCATCAGGTGATCCTGGCTTGCCAGGACCTCCTGGAGACAGGGGTCTGCCAGGTCCCCCTGGATTTGGTCCTCAGGGGCCTCCTGGAGAGAAAGGTATCCAGGGTGTTTCAGGAAGATCAGGAGGCCCTGGAGCACCAGGTCAGAAAGGTGAACCTGGCTTGGCAGTGTCAGAAAAAGGTGAACGTGGAACCCCAGGACGTGATGGAGATCCAGGTTTGCCAGGAAGTCCAGGTAACCCAGGCCTACCAGGACAGCCTGGGTTCCCTGGCTTAGCTGGACCCAAAGGAGATTCTGGTCTTCCTGGTATTGGTTTGCCAGGACCCCCAGGTCCTAAAGGATTTCCTGGTATTGCTGGTTCCCCTGGTGGACCTGGTATTCCTGGACGACCAGGTTTGGATGGACTACCTGGACAGCCTGGATTACCTGGGCCCAAAGGCCTGTTTGGAGAAAAGGGTTTAAAAGGATATGCAGGACTTACTGGTCCAAAAGGAAAGAGAGGTCCTCCTGGTCCACCGGGTCTTCCAGGTCCACCGGGCTTATCTCTGAACATAACAATGACTCAGCTAAAAGACATCATGTACCTCTCCGACAAGTCCAACTATCCGCTTATTAAGACCTTGCTAAGCTCCCTACAGGAAGACCTGCGATTCTTTATAGATCCTCCAGATGGCACTAAAGAACATCCAGCCACCACCTGCTTGGAGTTGATGCTCAGTCATTCTAACTTAACCAGTGGAATGTATTATATCGACCCAAATCAGGGCAGTCCTGCTGATGCTTTGCTGGTCTATTGTAACTTCGGTGCAGGAGGACAAACATGTTTGCCATCCCTGCAGCCACAGATCCCCATGAAATCCTGGCTCAGAGACGCCATGCCAGACTCATTTACATGGTTGAGCACTATAGATGGCGGCTTTCAGTTCGACTACATGGAAACGGGTGTGGTGCAAATGAGATTCCTGCGACTCAACAGCAAGTTTGTGAAGCAGAACATCACATTTTCATGCCAGCCAAACAGCCACCAGGGCTCCAACGAAAGAGACATTAAGTTCCTCGCAGATTCAAGGAGACAGAGCTTCTTGGGAACATTACTGGATTGCGAACCTGTCGGGTCACCGGATCCAGGCCCTCGGGAGTCTGTGTTCCAGTTAGAGACTGAAGACCTGGAGCTTTTACCAGTCAGAGATCTGGCTTTATTTGGCCACAGTGACACGACGGAACAGTTTCAGTTTACTGTGGGACAAGTCTGCTTCAGCTAAAACGCAAACACATTTGAGGACTCGCTCAACTCTTGTGCAGAGCCCTTCTCTGCCGAGACGAGAAGCAGAGCCGAGAACGATAAGCAAATATCAGGACTTTCTTTACTCTACTGTTCTCCATCTGCTGTGGGAATGGAGGTTCCTAATGAAGTTTTCACCTTCGGTTTACAGTGTACCTTCAGTGTACaattttaaactgatttgttGTCTAGTGGCAACGGCAATCCGGTGCGCAGCTTCTCACGAGGAGatgtaatatattgtttacAACGCTTGTTTCCTGTCAAATAACTGATTATTTATGTAACGTCGGGATGTTGTTACTCGTCATATTTCACAATGATTTCCCTTTGATTCAGGTTTTGTTGCACCTTATGACAAAGAGCACTGTGATATACACTACATGGCCAAAAGTGTCTGAGCACTTTAACACCATAAGCGCTTCATGCACGTTTAATTTGAAAACCTTTGGCATTGATAGGTAGTTCATCCACTCTGCGCTGCTGTAACGGCTTCTGCTCTTGTTGGAAGGCTTTTAAACCTTTCCAGAGATTTGCTGTCACGTTTGGCCATGTGGTGTATGTGGCACTCAAATCTGATATTGTTTAAACAATGTACCTCAAGCATACAATATGTATGAGGTACTGCTTGTGAAGACTAATAACACGAATGAGAATATTTTGGTCAGACCGTTGCCGTTGGGCCATTGTTTACGGTGGAACCAATGGAATTTACAGTACGTTACGTAACAAATTATATGACCGTTTCTGAATAACGCATAATCAATTGTTGTTCTTTTGTGCGAATTGCAAAAAGAGtcccatttaaaaataatgacaatttagCTCGTTGTAAAAGTAGCTCATTGCAATCTGTTTTAATAGCAaactgattttattcaaaagagtgtgtttttattgttgggTATGTTATGGTTGCCTAAGTAAAAATCAAAGGAAACCAAAATAAATCCTCAAGGGTTTGTGTTCTTTCAGGTTActgtatgaaattaaaatgcctTCAGCGTGAATTTTAATAActgcaaagatttttttttaatttgggaAGCGCAAGTTAATATCTGCAGGAATCAGAACGCTGTTAAGTATTGTAAATGTGACTTTGTCAAGggaaaaactgataaaaaataaa

Function

NR:

description
PREDICTED: collagen alpha-1(XI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240752.1 True 3306 mRNA 0.48 21 2178583 2207545

Neighbor

gene id symbol gene type direction distance location
LOC122346053 edc4,LOC107733561,LOC107726309 coding upstream 261131 1906927 ~ 1917452 (+)
LOC122346055 nutf2l,LOC107592026,LOC107748755,LOC107697171,LOC107688399,LOC107593625,LOC107739636,LOC108410494,LOC103027823 coding upstream 278158 1899595 ~ 1900425 (+)
LOC122345241 kat2b,LOC107748684,LOC107696888,LOC107593605,LOC107592021,LOC107739562,LOC107688328,LOC108411559 coding upstream 286479 1882015 ~ 1892104 (+)
LOC122345240 rab5aa,LOC107592022,LOC105904716,LOC101476881,LOC100701272 coding upstream 298575 1878085 ~ 1880008 (+)
LOC122346048 prodhb,prodha,LOC107730849,LOC107704395,LOC107661597,LOC106568196 coding upstream 302535 1865595 ~ 1876048 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding downstream 42113 2249658 ~ 2264585 (+)
LOC122345419 man1b1b,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 coding downstream 62668 2270213 ~ 2277034 (+)
LOC122345384 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 coding downstream 320957 2528502 ~ 2531593 (+)
LOC122345789 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 coding downstream 509468 2717013 ~ 2725424 (+)
hk2 hk2,LOC107668748,LOC107755855,LOC106585103,LOC108255852,LOC108411364,LOC107708252,LOC107599625 coding downstream 551810 2759355 ~ 2812420 (+)
G32694 NA non-coding upstream 101150 2076954 ~ 2077433 (+)
G32693 NA non-coding upstream 102538 2074389 ~ 2076045 (+)
LOC122344883 NA non-coding upstream 149257 2023363 ~ 2029326 (+)
G32649 NA non-coding upstream 179903 1998179 ~ 1998680 (+)
G32642 NA non-coding upstream 181527 1996020 ~ 1997056 (+)
G32702 NA non-coding downstream 36122 2243667 ~ 2243887 (+)
G32737 NA non-coding downstream 210832 2418377 ~ 2420831 (+)
G32765 NA non-coding downstream 371041 2578586 ~ 2579783 (+)
G32749 NA non-coding downstream 390705 2598250 ~ 2599639 (+)
G32770 figla non-coding downstream 400671 2608216 ~ 2609601 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 159433 2010217 ~ 2019150 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 273084 1900627 ~ 1905499 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 335570 1835148 ~ 1843013 (+)
G32611 prrc2b,LOC107704672 other upstream 352469 1822654 ~ 1826114 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other upstream 385317 1791828 ~ 1793266 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other downstream 57600 2265145 ~ 2268194 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other downstream 419539 2627084 ~ 2649361 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 1121255 3328800 ~ 3343070 (+)
G33015 NA other downstream 1397641 3605186 ~ 4144396 (+)
G33174 NA other downstream 2414962 4622507 ~ 4623060 (+)

Expression


Co-expression Network