nipsnap1 (nipsnap1,LOC107599167,LOC107653245,LOC107726724,LOC107599621,LOC107667606,LOC107755818)


Basic Information

Item Value
gene id nipsnap1
gene name nipsnap1,LOC107599167,LOC107653245,LOC107726724,LOC107599621,LOC107667606,LOC107755818
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1337163 ~ 1342053 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240770.1
TCCAACGGTTCCCCCGCGTCAAACATTAACTCGGACGAACGCGTGTCGCAACTCacgcaacaacaacaactccgTATAGACGAGAATCTACATACAACACGACAAAATAATGGCGACAACACGCTCTCTGCATATCCTCAACAGACAGCGGCATTTCCTGAACAAGGTGCACTCAACATGGCTGGTCAGAGGTTTTGCGAATAAAAGCGATGAAGGCTGGTTGAGTTCCATGTTTGCACACAAAGTGGATGCCAGGAAAGATGCCCACTCCAATCTGCTCTCCAAGAAAGAAACCAGCAACCTCTACAAGATTCAGTttcacAATGTCAAGCCAGAGTGCATGGAGGCATACAATAAAATGTCGGATGAGGTACAGAAAGAACTTCACCGGGATGCGAGTTATCCGTGTGAAGTCATCGGAAGCTGGAACACGTGGTATGGGGAACAGGATCAAGCGGTGCATCTCTGGAGGTATTCCGGCGGGTATCCCGCTCTAACCGAGTGTTTGAGCAAACTCAACAGCAATACGGCTTATCTTGCATTTCGAAAAGAGAGGAGTAAAATGCTGATCTCCCGATGCAACCAGCTTCTTCTGGAGTTCAGTTTCTGGAACGAGCCTGCACCCAGAAGCGGCCCCAACATTTACGAACTGAGAACATATCAACTAGTACCTGGAACAATGATTGAATGGGGAAATCACTGGGCTCGAGCCATCAAATATAGACAGGAAAATAATGAAGCGGTGGGAGGCTTCTTCACACAGATCGGGGAATTGTACGTCGTTCATCATTTATGGGCCTATAAAGACCTGCAGTCTAGAGAAGAGACCAGAAATGCTGCTTGGTTAAAAGAGGGCTGGGATGCCAATGTGCACTATACCATGCCTCTTATCCAAAAGATGGAATCGAGAATTATGATTCCCATGGAACATTCGCCTCTGCAGTAAAATCGGCAGCGTTTCGTCTGTGATGATACCAAATACACAATCCACCAGCTCTGACTTAATCAAACACATCCGAAGCAGATGATCGTGCTCTTCAGGTCCCCTTCAAGTAGACAGGCAGTTGTGTTAGAGAGGAGCCGGACCTAAAGCCTGCAAGAAGGCAGACCTGTGCAGGTGTCGAAGTCAATCTGAGAGATACGATGAGAGAGCTCGGACTGTTAAAGCATGTGTTGATCCGGTCGTTCTTCTTTCTCGTGCATCATTTGGCCTGTTGCAGTGTCTGAAGAAACTGCCTGTCAGTGTAGCCTTTTATctacaattaaaagaaatttgCTAAATTGAATAAATTTATTGGAATGCTTCA
>XM_043240771.1
AAGCTGAAGTCCAACGGTTCCCCCGCGTCAAACATTAACTCGGACGAACGCGTGTCGCAACTCacgcaacaacaacaactccgTATAGACGAGAATCTACATACAACACGACAAAATAATGGCGACAACACGCTCTCTGCATATCCTCAACAGACAGCGGCATTTCCTGAACAAGGTGCACTCAACATGGCTGGTCAGAGGTTTTGCGAATAAAAGCGATGAAGGCTGGTTGAGTTCCATGTTTGCACACAAAGTGGATGCCAGGAAAGATGCCCACTCCAATCTGCTCTCCAAGAAAGAAACCAGCAACCTCTACAAGATTCAGTttcacAATGTCAAGCCAGAGTGCATGGAGGCATACAATAAAATGTCGGATGAGGTACAGAAAGAACTTCACCGGGATGCGAGTTATCCGTGTGAAGTCATCGGAAGCTGGAACACGTGGTATGGGGAACAGGATCAAGCGGTGCATCTCTGGAGGTATTCCGGCGGGTATCCCGCTCTAACCGAGTGTTTGAGCAAACTCAACAGCAATACGCCTGGAACAATGATTGAATGGGGAAATCACTGGGCTCGAGCCATCAAATATAGACAGGAAAATAATGAAGCGGTGGGAGGCTTCTTCACACAGATCGGGGAATTGTACGTCGTTCATCATTTATGGGCCTATAAAGACCTGCAGTCTAGAGAAGAGACCAGAAATGCTGCTTGGTTAAAAGAGGGCTGGGATGCCAATGTGCACTATACCATGCCTCTTATCCAAAAGATGGAATCGAGAATTATGATTCCCATGGAACATTCGCCTCTGCAGTAAAATCGGCAGCGTTTCGTCTGTGATGATACCAAATACACAATCCACCAGCTCTGACTTAATCAAACACATCCGAAGCAGATGATCGTGCTCTTCAGGTCCCCTTCAAGTAGACAGGCAGTTGTGTTAGAGAGGAGCCGGACCTAAAGCCTGCAAGAAGGCAGACCTGTGCAGGTGTCGAAGTCAATCTGAGAGATACGATGAGAGAGCTCGGACTGTTAAAGCATGTGTTGATCCGGTCGTTCTTCTTTCTCGTGCATCATTTGGCCTGTTGCAGTGTCTGAAGAAACTGCCTGTCAGTGTAGCCTTTTATctacaattaaaagaaatttgCTAAATTGAATAAATTTATTGGAATGCTTCA

Function

symbol description
nipsnap1 Predicted to be active in mitochondrion. Is expressed in several structures, including endoderm; heart; liver; pectoral fin; and pleuroperitoneal region. Used to study Parkinson's disease. Orthologous to human NIPSNAP1 (nipsnap homolog 1).

NR:

description
protein NipSnap homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240770.1 True 1307 mRNA 0.46 10 1337163 1342044
XM_043240771.1 False 1175 mRNA 0.46 9 1337163 1342053

Neighbor

gene id symbol gene type direction distance location
rnft2 rnft2,LOC107599619,LOC107704451,LOC107667191 coding downstream 29626 1291831 ~ 1307537 (-)
fbxw8 fbxw8,LOC107667234,LOC107599639,LOC107566479 coding downstream 49165 1271898 ~ 1287998 (-)
nf2a nf2,nf2a,LOC107726729,LOC107599150,LOC108431713 coding downstream 80749 1224554 ~ 1256414 (-)
LOC122344672 LOC107599169,LOC100329495,LOC107704423,LOC107750761,LOC107667614,LOC108443917,LOC102231850,LOC103134964,LOC102295583 coding downstream 161889 1145529 ~ 1175274 (-)
prodhb prodhb,LOC107730849,LOC107704395,LOC103359847,LOC107566477 coding downstream 261386 1053144 ~ 1075777 (-)
nos1 nos1,LOC107599638,LOC107726721,LOC107668720 coding upstream 13306 1355359 ~ 1403124 (-)
ksr2 ksr2,LOC107599618 coding upstream 82351 1424404 ~ 1494687 (-)
wsb2 wsb2,LOC107704505,LOC107716543,LOC107668737,LOC107599617 coding upstream 159414 1501467 ~ 1506232 (-)
vsig10 vsig10,LOC107704538,LOC107599650,LOC107668731,LOC107736326,LOC107716538 coding upstream 164632 1506685 ~ 1512189 (-)
LOC122346041 NA coding upstream 170087 1512140 ~ 1519866 (-)
G32409 NA non-coding downstream 45400 1289278 ~ 1291763 (-)
G32292 NA non-coding downstream 284984 1051867 ~ 1052179 (-)
G32275 NA non-coding downstream 458021 877910 ~ 879142 (-)
LOC122344906 LOC107676118 non-coding downstream 514334 820190 ~ 822829 (-)
G32245 NA non-coding downstream 618753 718137 ~ 718410 (-)
G32440 NA non-coding upstream 170992 1513045 ~ 1513312 (-)
G32463 LOC107599159 non-coding upstream 195345 1537398 ~ 1539368 (-)
G32462 NA non-coding upstream 199173 1541226 ~ 1567149 (-)
G32486 pes,LOC107704970,LOC107741508 non-coding upstream 264372 1606425 ~ 1607747 (-)
G32572 NA non-coding upstream 324645 1666698 ~ 1666906 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 976 1312604 ~ 1336187 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323,LOC107751417 other downstream 706037 622514 ~ 631126 (-)
ddr2l ddr2l,LOC107704361,LOC107725118,LOC107550294,LOC107723312,LOC107667359,LOC108444179 other downstream 754068 556654 ~ 583095 (-)
kcnv2b atp5ib,atp5i,atp5ia,kcnv2b,LOC107703581,LOC107725101,LOC107704252,LOC107594594,LOC107723293 other downstream 949285 382052 ~ 387878 (-)
rictora rictora,LOC107704198,LOC107658248,LOC107567655,LOC107750288,LOC107594576,LOC107725140 other downstream 1075492 239951 ~ 261671 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other upstream 553 1342606 ~ 1354414 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other upstream 330971 1673024 ~ 1694286 (-)
G32676 NA other upstream 624584 1966637 ~ 1967748 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other upstream 678043 2020096 ~ 2022922 (-)
G32857 NA other upstream 1154451 2496504 ~ 2554146 (-)

Expression


Co-expression Network