LOC122346100 (LOC107757959,LOC107587426,LOC107709681,LOC107681216,LOC107560221,LOC107560220)


Basic Information

Item Value
gene id LOC122346100
gene name LOC107757959,LOC107587426,LOC107709681,LOC107681216,LOC107560221,LOC107560220
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2385151 ~ 2418053 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240773.1
TATCACGCTCAATGCTTATGTAAACTTTCCATGCCATAGACACATCAGCTTTTAGGctataatttatattcatgtttttatccatccagcattttcatatttttactacTATTTGAGTGTCAACTGGATGAACACTGCTTTTTAGAAATGTGGTTCATTTTATCAATGTGTGCACTGGTTAAAGCTTTCCATGCAGACTTCTCGGAAACAGGATCTGGTGTCCCGGACTCAGAGGGGTTCAACACATATCTGAATATCTTTACACAAAGAGTGGATTTACTTGAGCAGCTCTCAGGCTTAGTACCAACCAGCAGTAACGTGACCCTTTATGAGGAGGTCAAGGGCTGTCCAGTGCTGGACATTGGCCTGTATTCCACACTCACTATGCCCTCCCAGGAAGCATTTGGATCAAgCTTTGCAGATGAATTCAGTCTGCTGATTCAGCTGCAGAGCTCACAAGAAGAGGACCGGAGTGTGTTGACTTTGCTGAACTTCTATAATCACATTTTACTCCAGATCCGTATAGGCCCACACAGCATCACCTTTATCACCACACAGCAGCGCGACTATGAGTTTTCAGTGTCAGGGCTGTCTGACTCGCAGTGGCACTGGATCTCAGTTGGGGTTGCATTTGAATGGCTGGCTGTGTATGTGGACTGTGTGCTGGTGGAGAAAGTGAGCTGGATGTACCCGTACATGGGCATCACTACAGATGGCCTGCTTATGGTGGGGGGAATCCTGGAGGGCTTTGAAACACCCTTTAAGGGAGAGCTGAGACAGATGACCTTCATAATGGGAGATGCAAATGCTGCCAAGGATCACTGTGCTCTTCATCAGCATATGTGTGAACCTGTGAAAGAACGTGGCTTTCTCAAGACAGAAGATAGCGCTGAGGCTGAGAGCCCTTTGTCGTCCTCAGCTAGCTCAACATCACACAGACATTTCCCATCAAATCCCTCTACTGGCAAAGATGAGACTGCCAATATGCATTCAGATCCAGGGCTCCGGCCTGAACCCCGAATAACACATGGTTTGAACTCCAGTGTCTCTTCTAGGAATGAAGATCTTCGTAGTGAATGGGATATGTCTTCTTATCTGAACAGAACTTCAAAGCATTCGGTTCGTGGCTTTGCAGTGGTGGATGAGTCTGACCTTCTCACATCTCCTGCCGTCAGCACACATAGCAGGTATAAGGACACCAGTGACAAAAAGATCCAGTCCACCACCTTCAAATCATCAGAGGAGAACTTCACCTCTCAAAAACTGAAAGCAGATTTGGGTGGAGGCCGTCTTGAGCGGCTCCCTTTGAAGCCCTCTGGGGACATTGCTGACCTGGATTCTATTTTGAATGTGAAGACATCAGCCAGGCAGAAGGATCTGGTCAGGCCGACAGTCCATCCCGAGTTAAACCAGCTGACTGAAGAAGGTTTCTTACTTCCTTCAAAGAGCTTTGAAGTAGTCGGAAAGCCTTTGGCCAGCGTTCacgcaaaaaaaggaaatgaatcGCTTGTAGGCAAAGGACAAGCTGACTACAAGCACTCAAGCAAGAAAAGAGTTGCATTTAAACATGGTGATGTTATATTAGGCATGGATGGAAGGAGATACCGGCTCCTCAGTGGATCTCCAGGGCCTGTTGGGCCACCAGGGAGAACTGGGTGCGCAGGCAAAAGGGGCTATATTGGATACAAGGGTGATAAGGGTTCTAAAGGAGACCAAGGAGCCGATGGACCAAGAGGTATACCAGGACCACCAGGTCCACCAGGACTTCCAGTCCTCTACCTTTGGAGGAACACAGAGGAGGATTGGGCTACGTTTAAGagaACATCTTATTACCAATTGCTCGCAGCTGGATGGCCTAGACAGGCAGGACACCCTGGACCAATGGGTGACACAGGAGACCTGGGGTTTCCTGGAGATCCTGGTCAGATGGGACCACCAGGCATAAGAGGCGAAATGGGTGGCATTGGACCAAAGGGTGTTCGCGgcagagcaggaactcaaggaagagatggagagaaaggtCCGGATGGGGTGACAGGATCTCCAGGGGTTCCTGGCTTACAGGGTCCTCGCGGTTATAAAGGTGACACAGCGCCCCCTGGTGAGAAAGGAGATGAGGGTTTTCCTGGTGCCCCTGGAATCAGAGGAGACAAAGGACAGACTGGCCAGAAGggCTCAAAAGGAGATATTGGGTTTACTGGCTTTTCTGGCCCTTCAGTGAGGGATCCAGGAAATGATGGAAAACGTGGTCCTCCAGGGACAGTGGGAGCACCAGGTGCTACAGGATTGGTTGGGGCACAAGGTGTTAATGGCTCAGAAGGGGATGCTGGACCTGCTGGCCCTGTGGGGCGGAAAGGCCCTCAGGGGCCTAGAGGGATCGAGGGAGACAGAGGCCCACCTGGTGATCCTGGATCCCAGGGTCTTCAAGGTCAGGCGGGTCCACAGGGTCTCAAAGGTGACATAGGGCCAGAGGGTCCAGCAGGTAACAGAGGGCTACAAGGCATTGAAGGGCCCATGGGTACAACTGGATATCCAGGTCCAAAAGGCATTCCAGGTGTCACAGGCAGTAGGGGACCAGATGGAGAGAAGGGTGACAGAGGACCAAAGGGGAAAAAGgGACCAAAAGGAGCACTAGGGATCATGGGTCCACAGGGCGAAAGGGGCCAGTCAGGCCTCCCTGGTTTACCTGGTGTCAAAGGTCACCCAGGTACTCCAGGTATTCAGGGTGTAGATGGTGAAGTGGGTCCTCAGGGAACGCTTGGAAAAGAGGGTCAAAAGggCAGCAGGGGTGAACCTGGTGTTAAAGGAAGAACAGGACTCAGAGGATCCAGGGGTCGAGCAGGCCAACATGGTTCCCCTGGTGTACCTGGAATAGTGGGTTTACGAGGCCCAGTTGGTGCCGAGGGACCAGAAGGAAAGCCTGGTACACAGGGTGTTTCTGGTTCTGTTGGAAGCCCGGGGGATAAAGGACCTGATGGCCTGAAGGGCGTGACTGGAGAAGCAGGAAAACAAGGCCCTCCTGGCTCACAGGGCCAACCTGGACAACCAGGCCAAGATGGCACTCGGGGTCCTCCTGGTGAGAAGGGCTTCACTGGTAAACCAGGCATTGCAGGTGCTCAAGGGCCTGTAGGCATGTATGGTTATCCAGGAGCCACAGGCCTTCGTGGGCAGCCAGGTCACATTGGAGAGAGGGGTGAACCTGGCATCAGGGGTCCTCTGGGTCCACCAGGCAAAGAGGGCTACCTGGTTTACCAGGTCCGGCTGGTGGAGAGGGGCTCACGTGGACCACCGGTGAAGTAG

Function

NR:

description
PREDICTED: collagen alpha-1(XI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240773.1 True 3300 mRNA 0.52 36 2385151 2418053

Neighbor

gene id symbol gene type direction distance location
LOC122345768 LOC107562125,LOC107690349,LOC107554462,LOC107715242 coding downstream 285970 2090152 ~ 2099181 (-)
LOC122346063 LOC107747844,LOC107554104,LOC107556635,LOC107667225 coding downstream 294995 2087785 ~ 2090156 (-)
LOC122344882 gnrhr4,LOC107715601,LOC107575089,LOC107690392,LOC107715190,LOC107691141 coding downstream 326418 2052705 ~ 2058733 (-)
LOC122344761 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding downstream 486561 1893780 ~ 1898590 (-)
ube2l3b ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding downstream 599762 1780165 ~ 1785389 (-)
purba LOC107737074,LOC107755849,LOC107668742,LOC107670383,LOC107599601,LOC108431741,LOC107580671 coding upstream 106506 2524559 ~ 2527337 (-)
zgc:65851 zgc:65851,LOC107670379,LOC107708255,LOC107668750,LOC107599600,LOC107755851,LOC107573085 coding upstream 117972 2536025 ~ 2543574 (-)
mxd1 mxd1,LOC107670395,LOC107708253 coding upstream 137423 2555476 ~ 2579803 (-)
LOC122345702 figla coding upstream 189161 2607214 ~ 2609585 (-)
tet3 LOC107654213,LOC107708251,LOC107557386,LOC107697244,LOC107551814,LOC107755856 coding upstream 406118 2824171 ~ 2866043 (-)
LOC122344845 LOC107709689,LOC107560224,LOC107681222 non-coding downstream 450 2383907 ~ 2384701 (-)
LOC122344860 LOC107560224,LOC107690695,LOC107757958,LOC107681222,LOC107709689,LOC107587469 non-coding downstream 5756 2377967 ~ 2379395 (-)
G32727 LOC107681241 non-coding downstream 9488 2374002 ~ 2375663 (-)
LOC122346102 NA non-coding downstream 28371 2355966 ~ 2356780 (-)
G32707 NA non-coding downstream 115821 2268820 ~ 2269330 (-)
G32740 cacna1ba,LOC107709695,LOC107757972,LOC107587427,LOC107681248,LOC107560222,LOC107690670 non-coding upstream 4932 2422985 ~ 2424812 (-)
LOC122346060 cacna1ba,LOC107560222,LOC107587427,LOC107709695 non-coding upstream 15233 2433286 ~ 2435700 (-)
G32870 NA non-coding upstream 234391 2652444 ~ 2728807 (-)
G32881 NA non-coding upstream 331906 2749959 ~ 2797599 (-)
G32882 NA non-coding upstream 347230 2765283 ~ 2766771 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other downstream 362229 2020096 ~ 2022922 (-)
G32676 NA other downstream 417403 1966637 ~ 1967748 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other downstream 690865 1673024 ~ 1694286 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 1030737 1342606 ~ 1354414 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 1048964 1312604 ~ 1336187 (-)
G32857 NA other upstream 78451 2496504 ~ 2554146 (-)
snrnp27 snrnp27 other upstream 162495 2580548 ~ 2585452 (-)
add2 add2,LOC107668755 other upstream 168534 2586587 ~ 2605917 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other upstream 517690 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other upstream 533409 2951462 ~ 2960177 (-)

Expression


Co-expression Network