ttc37 (ttc37,LOC107720289,LOC107756296,LOC107703247)


Basic Information

Item Value
gene id ttc37
gene name ttc37,LOC107720289,LOC107756296,LOC107703247
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18815078 ~ 18832513 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240777.1
ATGGAAACTAAACAAGTTCGATCGATTCTCAGATTGTTTGATTAAGAAAATGTCCAGTAAAGAAGTAAAAGCCGAACTTAAAAGTGCCAGAGAAGCCatcaaaaataaagagtttaaagAAGCTTTGAAACACTGTAAgGCTGTTCTCAAACTTGAGAAGAATAACTATAATGCCTGGGTGTTTATTGGAGTGGCAGCTACAGAACTGCAGCAGCCGGATCAGGCACAGACCGCCTACAGGAAGGCCACTGAACTAGAGCCAGAGCAACTGCTTGCATGGCAGGGTTTAGCAAATTTGTACGAAAAAAGTGACCAAGCAGCTTTCAAAGCGGAGCTACCAAAGATTTACCAGAAACTTATTACACTGTATGAAACCTCAGACaaagcaaaatgttttgaagtGAGCAAGAAGCTGGTGGAAGTCTATCAGTCGGAAAAGAACTATTTACAGGTGGCCAGAGTGTGGAGGAGGCTGATCCAGGTGAGGGAGGCCGAGGAAGGGGTGGAGGACGTAGAGCTGCTGGAGCTGTGGAAGGAGATGACCAGACTCTTGCAGGACACTGTTGAGGAGCAGGACAATGAGACTCAACAACACCTGATATCAGCGTTTGAAAGAGCTTTGCAACTGACTACAGACGTGCCTGATGAAGCCCACAGGAGCCTTTTGCAGGACTACATTAAATGTCTTTCCAAGGTTCCTCATGAGGCGGCCAAGCTGAAGGAAGTTTGCGATGCCGCTCTGTCACGCTATCCGACACACTCCTACCCTCTAGAGGCCCTCAGTGAGCACTACATCAGAGCAGGTGACTGCAGTGAGGAAGCTGTCCGCTGTTTCAGCCGCCTCTCAGAACTGGATCCGAACAACTCGCATGCTCACTTTGGTCTTGGTATTAAAGCTTGTCAGGATAAAAAATACGAGGATGCCATCAAAAGCATTAGTCTAGGATTGAAGCGTATGCGCTCCTCCATCATTGGCTGGTACAATCTTGCTCTGGCTCagctaaaaatgcataaatactctGACAGCGCCACAGCTTCCAGCCAAGGGCTGAAGTCAAGTGTGGGGACCTCTGATGATTGGACTCATAAGCTGCAGAGGTTGAAACTAGAGGCTCTGGTGAGAACAGAAAGAGAACAAGATGCTGATGAAGCTCTGCAGATTCTTACACAGATTTCAGATGCCAAAAATGACCCAGTGCTTTTAGCGTTGAAAGGAAGAGCTCACTTGCAAAAAGGCCACACCGAGGAAGCGTTTCAGGTTTCAGCTGAGCTACTGAGCTCTCACCCAGGATCCGTGGAGGGTCTCGCTCTGAAGGGGCTCGCTCATGTTGTGAAAGAACAGCACAAACAAGCTGAAGAAAGCTTTCTAGAGGCTTTATCCGGGAGCCCAGATAATGGGGAGTTGTTCTTTCTGCTGGGGCGCCTGTTCTGGAACATGGGAGAAGAAATGCGAAGGGATCGGAGCAAAGCCCATACACATTTACTCAAGgCTGCTAAACTGGACCCGTATCTCGCTTCGGTGTTTCGTTTTCTGGGTCATTACTATAGAGAGATAGCAAAAGATCAGGGCAGAGCCAGAGGCTGCTATAAGAGAGCGTTTGAGCTGGATCCCTGTGATGCGGAGGCTGGAGCGGCTACTGTTGACCTCAGCATGGAGCAGGGGGACATGGACTCAGCTCTGACTGTTCTGCAGTCTGTAACAGAGAGAGCCACTCCTGGCTCTGCTAAATGGGCCTGGATGAGGAGAGGGCTTTACCACCTCAAAATTGGCCAGCATCAACAGGCTATTGCAGATCTGCAGGCAGCGTTGAGGGCTGATCCTCAGGATTGGGTGTGCTGGGAATGTTTAGGTGAGGCGTATCTTAACCGCAGGAGTTTCACAGCTGCTCTGAAAGCATTCGATAAAGCACATACTTTGCAGCCCACCTCCATCTACAGCCTCTATCAGACTGCCGCCATTAAACAGATCCTCGGCCGGTTTAAAGAGGCCACTGTTGAGTACAGGCAGATCTTAGAGCAGGAGGACTATGTGCCAGCATTGAAAGGTCTGGGTGAATGCTTGCTAGCCTTGGCTAGAAGTGCACTTGATGACTATCTTGATGGAAGAGCTGTAGATTTGATACAGAACGCCATCCATTACCTTTTCAGAGCTTTAAAGCAAAGGCCAGACCTGTCGTGTCTGTGGAAGTTACTAGGTGATGCCTGCACCACCTCCAGAACCGTGTCCCCAAACCGAGCCAAAGTGCTGGTGCCTGGAGCTCTATGTGGAATGGATCCACCTGATCAGGGCCATACACTGGACCAGAGACAGCTCCTCATACTAGGAGAAAGGTGCTTTGGTCGTGCTTTGAAACTCATGCCGGAAGCCCCTAGTCTGTGGTGTGACCTTGGCCTGAACTACTACCACCAATCCAGACTGGTCAGCTGCCTCTGTCCTGAAAAGGATCGGCAGCCTCTGTTAGAGAAAGCCATACAGTGTGTGAAGAAGGCGATCATGCTCGACAGTGCAAATCACACATACTGGAATACACTTGGGGTGGTCTCCATGGCAAAGGGAATAGAAAACTTTGCACTCGCACAACACTGCTTTGTTAAATCGGTAAAAGAGGAGTCAAATaatgtgGTTGCATGGACCAACCTTGGTGCTTTGTATCTAAAGAAGGGAAATATAGagctctcgCATGAAGCTTTCAAGATTGCTCAGTCTCTGGAACCCCTGTATGTGAACTGCTGGATTGGACAGGCCCTGATTGCTGAGTCGGTGGGCAGTTACGACACCATGGATCTTTTCAGACACACCACAGAACTGAGCACTCATACTGAGGGAGTGAAGGGTTATGCGTATTGGGTTTGCTCCACACTGCTGGACAGGAGCAACAGAGACTCAGAGATCTACCTCTACAACATAGTCCAGATGAACGCTGTCTCTGCTGCCCAGGTGGCTCTGAGCAAGTACACCGAGAGGATTCAGACGGACCCAGACGCCTTCATTATGCTCGGTTATTTGAACACACACCTGCAGTTGAGGAAACAGGCCACTGAAGCATATCGCAGAGCTGTCGAGTTGCTTCAGGCATCTCCTCACAAAGATAAGCTCAGCTTTGCTCTGAGGGGTTATGGACGTGCCCTCAGTGATAATGGACAGTGGGAGGAAGCAGTGCGTATTTATTCCTCCACACCACTAGAGGAGCTGCACGATCTCATCGGACTGGCGCTCGCATGTTTCAGAATCAGTCGCTTGCCAGAGAGTGTTCAGGCCTATGAAAAAGCCCTTGCAGTTGCCTCtagcgaaaaggaaaaggcCTGCATACTCACTGCGCTGGCCCTGATACAGCACAGACTGGGCAACATCGATCATGCCAAAACGCTTCTCTTCAAGTGctcCATGCTGAAAGAACCTGTCTCCGAGAGTTTGTGGTGTCTGTGTTCCCTGGGTTTGGTACATGGGGATGTGACCCTGGCAAGTGCTACGCTTACTGAGCTTCTAAAACTGGGGGAATGTGTAGGAGGCGCTGTGGAGGAGCGCTGTCTGCTCACTTGCACCCTGCTGGCCCTGCAGGGCAACTATAACGGCGTACACAGGGAGGCTGCTAGGGCTATACACAGGAACCCCGGAAATCCTTCTCTCTGGGCTCTTCTCTCCAGACTGGTCCCACAGTACTGCCCCAACAAAGCCAATGGAGGAGCTGTGGCCGGCAGTGTGGCGTGTCATGCTAGCTTGACACTTGGAAAGAGGGCGTTGCTGTACAGTGGAGTGAATCAGTTGGCCTCAGGCCGGCACTCCGGTGAAGACAGCAGACGCAACGCTCTGAAAACAATCCAAAGAGCTGTGCTGCTGTGCCCAGATGATCCTGCTGGGTGGGCGGGGCTGTTGGCCGCCTGTCACACAGAGAACACTGCATGCTTACTCCAAGGCTCCGTCCCTCGCAGAGAAGATCTGGAGAGGGCGCACATGGCACTGGTTTCTGAAAAAGTGAAGGGCCTGCAGGCAGAGGACGGGCTCTTGGCTCAGGCTCTGGAGGGATGGGTGCTGCAGCAGGCCGTGACAGGACTCAAACAGAGTGGCCAATATGACCAGGCAGAGACTCTGTGCtcccagGTTCTGAGCGTATCTCCAGAGCATCCTGTGGTGTTCCTGATGTTTAGGCAGGTTCAATGTGAGCGCCTCCTGTTGTCTGAAACTGGTAAAGGTGTTCCTCCTGCAGTGCTGGATCAGCTCAGCGCCGCTGTCATGGCCAACCACACGTCTGTGTCCGCCTGGCATTGGTTGGCAGAAGTGTACCGTTCTCAGGGTCTGCTGGCTCAGGCCTCCGTGGCATACAGACAGAGTCTTCAGCTGGCCTCTCAGCTCGGCGACCACTTTGGAAAGATGAGCAGCCTGCTCCGACTAGCCCTGCTGGCACTCATGCCGTGTTTGGCTGGCGTCTGTGTCTCTGAGTGGAAGGATCTGGTGTTGGAGGCCAGCACTGAAGTCTTAAAGATGGGCAGCTCACCAGTAGCTCTGCTCTTCCAAGCCTTACTGCAGTTCTCTATTAAGATGGGTGCCAGGGAAACCCGTCGCCTGTTGGAGAAAATAGTTTATGCTTCAGCCTCAGGCGGCTCTGAAACAATAGTGTCAGTGGCCCGCTGGTACCTCCTGCGCCACCTGCACACCAAAGATGACCTGGAGCTGATAGATACTCTGTTGGTGAAGGCAACAGCAGAAGGAGACAGCAGGCTGGTGGACTTCCACAGGCGCCTTTACCCATCCAGCTGAGACCGTCCACCATCATTACATCCCTCAGGGGACCTGTATTTCACCATCTAACCTGCTTCATCTTCAGCTGCACACAGAGCAGTTTACTCACcaaataatgcatttacaaatcTGGAAGTCTTTAcatgacaatttttttatgtatggaCATATCTGCTAAGCTAATTTAAAAAGACACTTGATCTATACGATTAGCTCTTTTATGCAGTTTATGCTATAGCTGAATTAGCCTATGCTATTAGCCTATGTATTGCATTCACGTGAGcgttgaaaaatgaaaatacatgaaaaatgacattaatcattcatgattttttttatgtgccttCCCCACAGCGACAGTTTTGCCATAATTAGTATTACCACAAGGCTCAGCTGACTATAATAAGCTAATCTGCTAATGCAGTTATGTAACTTTAAAAGAGTCTGCTGCGGATCCAAAATCACTATTGGAAACATTTGAAAGTGCAGCAGTGGGATATCTGCTCTTCAGATTGTCTGTTTATGGTCAGAGAAACcaagaatttaaatgaattgctTTTTATGTGGTGCATTGTTATCTTTGCCCTACAGATGCACTGGAAGAACTAATTAACCTCTGTTTTCCCTCACTGTCATTTCCAAATAACTGACTTTACTCATCTCTGCAGAACTGACCTATACAGTCGACTGCAGAATGCTATTAAGTCCCTGAAATATTAAAGCACATAcgaaaaacagtaaataataattgtttatcaTGTTGGGTGCATTTTTGGTTTGCAAGTGTGTATTGGTggcttgaaaaattaaatgaaaacaaagcaa

Function

symbol description
ttc37 Predicted to act upstream of or within RNA catabolic process. Predicted to be part of Ski complex. Human ortholog(s) of this gene implicated in trichohepatoenteric syndrome 1. Orthologous to human TTC37 (tetratricopeptide repeat domain 37).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K12600 SKI3, TTC37; superkiller protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240777.1 True 5563 mRNA 0.49 41 18815078 18832513

Neighbor

gene id symbol gene type direction distance location
mctp1a mctp1a,mctp1,LOC107756292,LOC107720291,LOC107703246,LOC107587547 coding downstream 9216 18678708 ~ 18805862 (-)
kiaa0825 kiaa0825,LOC107720295,LOC107699712,LOC107587549,LOC107756295,LOC107703244 coding downstream 166400 18535605 ~ 18648678 (-)
fam172a fam172a,LOC107720296,LOC107703201,LOC107756291 coding downstream 280571 18385973 ~ 18534507 (-)
LOC122345814 LOC107567414,LOC107756269,LOC107699689,LOC107575123,LOC107720179,LOC107720216 coding downstream 768691 18043514 ~ 18046387 (-)
LOC122344755 LOC107575123,LOC107720179 coding downstream 773016 18037587 ~ 18042062 (-)
hmgcra hmgcra,LOC107720287,LOC107699716,LOC107756298,LOC107587518,LOC107703249,LOC107555490 coding upstream 36529 18869042 ~ 18877023 (-)
ccdc180 ccdc180,LOC107587542,LOC107579191 coding upstream 88914 18921427 ~ 18932581 (-)
card9 LOC107699720,LOC107756300,LOC107555475 coding upstream 100187 18932700 ~ 18937965 (-)
snapc4 LOC107699680,LOC107720210 coding upstream 105809 18938322 ~ 18949359 (-)
entr1 LOC107720284,LOC107699695,LOC107587560,LOC107555476,LOC107703226 coding upstream 117049 18949562 ~ 18952735 (-)
G37637 NA non-coding downstream 1307 18813564 ~ 18813771 (-)
G37571 NA non-coding downstream 423430 18373317 ~ 18391648 (-)
G37570 NA non-coding downstream 441828 18372208 ~ 18373250 (-)
G37569 NA non-coding downstream 444261 18370523 ~ 18370817 (-)
G37565 nr2f1a,nr2f1,LOC107671052,LOC107567418 non-coding downstream 449611 18362413 ~ 18365467 (-)
G37757 ckmt2b,ckmt2,LOC107720280,LOC107756255 non-coding upstream 236401 19068914 ~ 19075774 (-)
G37774 NA non-coding upstream 290512 19123025 ~ 19123308 (-)
G37776 NA non-coding upstream 300300 19132813 ~ 19133144 (-)
G37792 NA non-coding upstream 391839 19224352 ~ 19225429 (-)
G37799 NA non-coding upstream 449352 19281865 ~ 19282092 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 1464698 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 1955147 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 2101911 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 2181957 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 2436563 16376266 ~ 16378515 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 342950 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 1032506 19865019 ~ 19935576 (-)
G38058 NA other upstream 1219146 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 1293076 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 1562218 20394731 ~ 20396734 (-)

Expression


Co-expression Network