bco2l (bco2l,LOC107595022,LOC107744484,LOC108434491)


Basic Information

Item Value
gene id bco2l
gene name bco2l,LOC107595022,LOC107744484,LOC108434491
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10090686 ~ 10094576 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240817.1
AAAGACGTGACAGCCTGACTTTAGAGATTAAATAGTGAAGCAGTAAAGCATTTAACATGTTCACTCTGAACTGTATTGCTTAGGCTCTGTACAAGGTCCATTTTAGCCAAGTTAGCCAATCCCACTGTGTCATGTGCTTATGGGATGGTCTTATATTGCCCGTATCTTACTGTTATTCTTCTTCTGtcctaattttttttgttgtttagtgTTTCATAAGTTATTAAGGTTTAGAATCTTAACAGCCAAAGTCATGTCTAAATCTACACGGGATTCAATGTATAAAGTGTCAGCTAACAAAAAGCGGCCATCTGCCAGTGGTCTGGAGTTCATTGGTCCTCTTGTGAGCTCTGTGGAGGAGACCCCAGACCCCATTAGTACAGTTATTAAAGGGGAAATTCCCTCCTGGATCACTGGCAGCTTCCTAAGAAATGGACCTGGAAGATTTGAGTTTGGTGAAAGCAAATTCACTCACTGGTTTGACGGCATGGCCTTGATGCATCGTTTCCACATTAAAGATGGCCAGGTGACCTACAGCAGCTCTTTTTTGCGCAGCGACTCTTATGTGCAAAATGCAGAGAAGAATCGAATTGTGGTGTCTGAATTTGGTACCCTGGCAACACCTGATCCATGCAAGAACATCTTTGCTCGGTTCTTTTCACGTTTTCAGATTCCAAAGGCAACTGATAATGCAGGAGTGAGCTTTGTTAAGTACAAGGGAGATTTCTACGTAAGCACAGAAACCAACTTCATGCGCAGAATCGACCCAGTGAGCCTGGAAACTaaagaaaaggttgattggtcaaaatatattgcaattaatGCAGCAACAGCTCACCCACATTACGACCGTGACGGAGCAACTTACAACTTGGGAAATTCATATGACCGAAAAGGTTTCTTCTACCATATCTTCCGAGTACCACCAGATGATGGAAAGGACGATGTTGCCGATCTCTCAGGCGCAGAGATTCTTTGCTCTATTCCTGCATCTGACCCCAGGAAACCATCATACTACCACAGTTTTGTCATGTCAGAGAATTACATAGTCTTCATTGAGCAGCCGATCAAACTAGACCTGATGAAATTCATGCTGTACAGAATTGTCGGAAAGAGCTTTCATAAAGTCATGTCCTGGAACCCAGAGCTGGAAACCATCTTCCATGTGGTAGACAGACACACTGGCCAGCTCATCAAGACAAAATACTACAGCAGTGCCATGTTCACACTGCACCAGATCAATGCGTATGAGGATAATGGGTATTTGATTATGGACATGTGCTGTGGAGATGATGGCAATGTGATTGGTGATTTTACAATAAAGAACCTTCAGGCGTCTGGAGAGGAACTTGACAAGTTCTTCAATTCATTGTGCACAAACTTACCACGGAGATATGTACTGCCTCTGGATGTAAAGGAAGATGAGCCTAATGACCACAACCTCATCAGTTTGTCTTATACCACTGCCACCGCTGTGAAGACTGTAACTGGGGTGTTTCTGAGCCATGAAGATCTCTACAGTGATGACCTGTTGCAGTATGGTGGTCTGGAGTTCCCACAGATTAACTACATGCATTACAATGCTCGTCCTTACCGGTACTTCTACGCCTGTGGCTTTGGGCATGTATTTGGTGACTCTCTGCTTAAGATGGACCTAGAAGGAAAGAAGCTAAAGGTCTGGCGCCACACTGGTTTGTTCCCATCAGAACCAGTGTTTGTTCCAGCACCTGATGCTAAGGATGAGGATGATGGTGTGGTCATGTCTGTGGTCATTACACCAAGAGAGAAAAAGAACAGTTTCCTCCTTGTCCTTGATGCCAAGACCTTCACAGAGCTTGGGCGAGCAGAAGTTCCAGTGGACATCCCGTATGGCACTCATGGACTCTTCAATGAGATgagctaaataataaaaaaaataaaaaataaaaataaaaataaataactccTAAAAGTAAAATCGGCTATGTAATCTTTACAATaagctttattttgtttgtattatgttgttatatgcattttcttttcaccTTACAAATTTTGTATATGGCTgaatgtgacattaaaatgttatggaAAAActg

Function

symbol description
bco2l Enables 9,10 (9', 10')-carotenoid-cleaving dioxygenase activity. Acts upstream of or within negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway. Located in mitochondrion. Is expressed in blood cell; digestive system; head; pericardial region; and trunk.

NR:

description
PREDICTED: beta,beta-carotene 9',10'-oxygenase

GO:

id name namespace
GO:1902176 negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0010437 9,10 (9', 10')-carotenoid-cleaving dioxygenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240817.1 True 2081 mRNA 0.42 12 10090686 10094576

Neighbor

gene id symbol gene type direction distance location
si:ch211-214j8.12 LOC107744420,LOC107752499,LOC107592325,LOC107672795,LOC107579027,LOC107595041 coding downstream 2801 10083719 ~ 10087885 (-)
dhfr dhfr,LOC107673433,LOC107744483,LOC107672723 coding downstream 7016 10080291 ~ 10083670 (-)
ankrd34bb LOC107672721,LOC107744482,LOC107595021,LOC107673432,LOC107592407,LOC107752509 coding downstream 11202 10073972 ~ 10079484 (-)
ak6 ak6,LOC107595020,LOC107592327 coding downstream 30265 10058909 ~ 10060421 (-)
marveld2b marveld2b,LOC107673429,LOC107595015,LOC107744415,LOC107672714,LOC107592409,LOC107752498 coding downstream 31912 10053979 ~ 10058774 (-)
klf9 LOC107744421,LOC107673386,LOC107595023,LOC107752501,LOC107672754,LOC107592322 coding upstream 20205 10114781 ~ 10118225 (-)
trpm3 trpm3,LOC107673407,LOC107672763,LOC107595026,LOC107592321,LOC108434489,LOC107744424 coding upstream 25781 10120357 ~ 10226885 (-)
cemip2 tmem2,LOC107599911,LOC107592377 coding upstream 141677 10236253 ~ 10260085 (-)
abhd17b abhd17b,f108b,LOC107599913,LOC103022021,LOC107672759,LOC107592319 coding upstream 167013 10261589 ~ 10272840 (-)
zfand5a LOC107592318,LOC107738291,LOC107672769,LOC107673406,LOC107599914 coding upstream 191186 10285762 ~ 10291872 (-)
G34877 NA non-coding downstream 312448 9777633 ~ 9778238 (-)
G34871 NA non-coding downstream 324079 9766268 ~ 9766607 (-)
G34869 NA non-coding downstream 326154 9764073 ~ 9764532 (-)
G34704 NA non-coding downstream 842645 9246920 ~ 9248041 (-)
G34594 NA non-coding downstream 1029872 9013306 ~ 9060814 (-)
G35035 NA non-coding upstream 186833 10281409 ~ 10296141 (-)
G35047 NA non-coding upstream 243171 10337747 ~ 10341167 (-)
G35107 NA non-coding upstream 284190 10378766 ~ 10378998 (-)
G35139 abca2,LOC107672707,LOC107730718 non-coding upstream 418354 10512930 ~ 10513285 (-)
G35142 NA non-coding upstream 422095 10516671 ~ 10517342 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 688063 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 870158 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 1160633 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 1412968 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 1659100 8429700 ~ 8431586 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 230383 10324959 ~ 10335343 (-)
G35122 NA other upstream 366632 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 773788 10868364 ~ 10874064 (-)
G35384 NA other upstream 829351 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 865735 10960311 ~ 10969118 (-)

Expression


Co-expression Network