pou2f3 (pou2f3,LOC107600771,LOC107712933,LOC107691752,LOC107556425,LOC107744320,LOC107664296)


Basic Information

Item Value
gene id pou2f3
gene name pou2f3,LOC107600771,LOC107712933,LOC107691752,LOC107556425,LOC107744320,LOC107664296
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23057205 ~ 23066572 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240855.1
ATTCTCAAGCTTTTCGAAGTTTGCTGTCTGCCTATTGTTGTTTTATGCAAAAAGTCAGAGTCTGGATAGGACGCACCGAGGGCCTTATGCAAATGACGTGTCTATCGGCTGGTGTGGGATACTGAAGAGGTGAATGCTCTTCCACTAACCCACTTTGCTAAATGTGTTTCTCTGAACCTTTTTGAGAAAGGTTCGCTCGGTTTGTCGTCGAAGACCTGAAGGGAAGCAGCACAGACCGATCCGCAGAGCCTGGATCCGTGAGGGCTTTCCCTGCTCTAAGATATTAAGATGAGCACAGAGGCTGTTGAGCAGACAGAATCTCAGCCTGAACAAGCTGACATTGAACAAAACGGCATTGACTTCACCAGACAAATTAAGACCGAGAACCTGAACGATTCGCCTCATTCTGGATCGTCACACAAGACATGTCACCTGACTCAGGGATCCCCGGTGCCTGGCGGCCAGCTTCCCGGGGAGCTGCCCTCCCTGCACCCTCTGCCCCAGCTGGTCCTGATGCCTGGATCTCACCTGTCCTCTCCTTCATCATTCCTCCTCTCACAGGCCCAGTCGGGACACCAAGCACTGCTGCAGCCCAATCTGCTCTCCTTACCCTCCCAGTCTCAGACGGGGCTCCTACCGCACCAGCCTGGCATCGCACTCACCCCTCAGGCAATGGGCAGGGCAGGTCTGGCCGGGTCCTCTATGGATGGACACCTGGACATGTCTCACTTACAGGTTCCTAAACATGTGGGATCACCTCAAGATGAACCCAATGACCTGGAGGAACTCGAGCAGTTCGCTAAAGCCTTCAAACAGAGACGCATCAAACTCGGCTTCACTCAAGGTGACGTGGGTCTGGCCATGGGAAAGCTGTATGGAAATGACTTCAGTCAGACTACCATCTCGCGCTTCGAGGCTCTTAATCTTAGCTTCAAAAACATGTGCAAGCTCAAGCCCTTGCTGGAGAAGTGGCTGAGTGACGCAGAAAACTCTCCATCTGACTCCATGACCAACCCCACCACCCTGCCTCCGCTTATGGAGGGATATGGAaggaagaggaaaaagagaacGAGCATCGAAACTAACATCAAACTCACGCTAGAGAAACGCTTTGTAGACAACCCAAAACCCAACTCTGAAGAGATCACACTCATCTCGGAGCAGCTATCCATGGAGAAGGAAGTGGTGCGGGTTTGGTTCTGCAACCGGCGGCAGAAGGAGAAGAGGATATTCTGCCCTGTCTCCACTTCACCCATGAAGTCGCACAACTACAACCCTCGTCTGcctTCAACTTCCCGCTCATTCAGTCCGCTCGCCGCTGGAGGTGTGTCATCGAGCTCCTCCCCCAGCAGTCCCAGCCGAGGCTCCTCCCCCAGCACTCTGTCCACTACATCCAGTCCACTGACCGCCCAGGGGGTCAACCAGGCGTTCAACACCCCAGGATCCTGGTATCGCTGGAACGCCACGTCATACCACCACTGAGCCCCTCTGAAGGCACCCGCTTCATTTCATAACTTACCAAACCAGAGAGAAACACTCCTTCTGTTATGTTTACAACCAGCACTAAACAAGGAGGCAGAACACAGGGAGCCACTATTCTGCTTCTCGCGGTCTTACGTTCAAAGGGCTTGTGAATAGAGCTTCACCGCTAATTACCGAAGGGATAAAGCACTAATATGCAACGGCACATTGTTTAGATATGCAATCTCGCTTTAAAAGAACATGAGAGACATGTTCGGCATTTTCAGCAGAGCTTTTAACGTGCATGAAAGCTCGTTTCACTTTCTGTGTAAAATCTCTGCGCCGATTTTGTTGGAGATGAAGGTTCAAATCGGGCTTTTTGCGCATCGATAACGCGGATGTGAAAAGCTGCACATAACCAAAGCAAaaccacagattttttttaatatctcgTTTACGTATTGCTTTATTAGAGACTTGTTTTTAATGATGTACTTTTGTGATGAAGTTTGCTGGTGTTCTTGAGCGCTATCGGCCCCCGCTCAAGACCGAGACTGGAACAGCTGGCCCCGATGTGTGTAGTAATGACTAAATTTAGTGGATTGGTCAACGGTTTACAGTTCTAAACATTTCTGCGTACACCTAGTTTTGTGTTTCTGAACATTTCTGAGGATTTCTGGCAGGGAAAACGTTTTATATGCCTTGTGTGGAATATGTGCAGTTCACACTATTTTTATGCAACATTGTCCAAAGCATTTGAAGTTCCTTGAGTTTCACGTTTTAGCttttatatatgattaataatattatctagattgtttgtttgtttgtttgtttgttcggttgttctttgcttttttaaaaaaatttgaataacaCTGTTGTATATTTCTGGTTCACTGTTTGACTGTTATTAAAA
>XM_043240856.1
TTAAAATATAGAGAAgcagtttttataaaatattactattttatttagagagagagagagagagagagaaatagagagtgTAAGAGATGCACCTGGAGGTCTGTAAGTATTCAAATGTGAAGGCCTCTAAAGGTTGCCATGGAAACTGATTTGCATGATCTGATGATTTCCATACTGGAAGTTTGGCTCAGGAGAAGGGTAGATTTCCATATTGTGGAGTGAGTGAGTGCCGTTCTAACCACGGCCTCATAGAGACGGATTTGAATTTCAAATGAAGAGAGATTACCTGGCATTGACGACCTTTGAACCCCCGACTAACCCTCCTCGCTCGCTTTAATGGAACATTTGGGAGTTTGTTTTTATGACATTGAACAAAACGGCATTGACTTCACCAGACAAATTAAGACCGAGAACCTGAACGATTCGCCTCATTCTGGATCGTCACACAAGACATGTCACCTGACTCAGGGATCCCCGGTGCCTGGCGGCCAGCTTCCCGGGGAGCTGCCCTCCCTGCACCCTCTGCCCCAGCTGGTCCTGATGCCTGGATCTCACCTGTCCTCTCCTTCATCATTCCTCCTCTCACAGGCCCAGTCGGGACACCAAGCACTGCTGCAGCCCAATCTGCTCTCCTTACCCTCCCAGTCTCAGACGGGGCTCCTACCGCACCAGCCTGGCATCGCACTCACCCCTCAGGCAATGGGCAGGGCAGGTCTGGCCGGGTCCTCTATGGATGGACACCTGGACATGTCTCACTTACAGGTTCCTAAACATGTGGGATCACCTCAAGATGAACCCAATGACCTGGAGGAACTCGAGCAGTTCGCTAAAGCCTTCAAACAGAGACGCATCAAACTCGGCTTCACTCAAGGTGACGTGGGTCTGGCCATGGGAAAGCTGTATGGAAATGACTTCAGTCAGACTACCATCTCGCGCTTCGAGGCTCTTAATCTTAGCTTCAAAAACATGTGCAAGCTCAAGCCCTTGCTGGAGAAGTGGCTGAGTGACGCAGAAAACTCTCCATCTGACTCCATGACCAACCCCACCACCCTGCCTCCGCTTATGGAGGGATATGGAaggaagaggaaaaagagaacGAGCATCGAAACTAACATCAAACTCACGCTAGAGAAACGCTTTGTAGACAACCCAAAACCCAACTCTGAAGAGATCACACTCATCTCGGAGCAGCTATCCATGGAGAAGGAAGTGGTGCGGGTTTGGTTCTGCAACCGGCGGCAGAAGGAGAAGAGGATATTCTGCCCTGTCTCCACTTCACCCATGAAGTCGCACAACTACAACCCTCGTCTGcctTCAACTTCCCGCTCATTCAGTCCGCTCGCCGCTGGAGGTGTGTCATCGAGCTCCTCCCCCAGCAGTCCCAGCCGAGGCTCCTCCCCCAGCACTCTGTCCACTACATCCAGTCCACTGACCGCCCAGGGGGTCAACCAGGCGTTCAACACCCCAGGATCCTGGTATCGCTGGAACGCCACGTCATACCACCACTGAGCCCCTCTGAAGGCACCCGCTTCATTTCATAACTTACCAAACCAGAGAGAAACACTCCTTCTGTTATGTTTACAACCAGCACTAAACAAGGAGGCAGAACACAGGGAGCCACTATTCTGCTTCTCGCGGTCTTACGTTCAAAGGGCTTGTGAATAGAGCTTCACCGCTAATTACCGAAGGGATAAAGCACTAATATGCAACGGCACATTGTTTAGATATGCAATCTCGCTTTAAAAGAACATGAGAGACATGTTCGGCATTTTCAGCAGAGCTTTTAACGTGCATGAAAGCTCGTTTCACTTTCTGTGTAAAATCTCTGCGCCGATTTTGTTGGAGATGAAGGTTCAAATCGGGCTTTTTGCGCATCGATAACGCGGATGTGAAAAGCTGCACATAACCAAAGCAAaaccacagattttttttaatatctcgTTTACGTATTGCTTTATTAGAGACTTGTTTTTAATGATGTACTTTTGTGATGAAGTTTGCTGGTGTTCTTGAGCGCTATCGGCCCCCGCTCAAGACCGAGACTGGAACAGCTGGCCCCGATGTGTGTAGTAATGACTAAATTTAGTGGATTGGTCAACGGTTTACAGTTCTAAACATTTCTGCGTACACCTAGTTTTGTGTTTCTGAACATTTCTGAGGATTTCTGGCAGGGAAAACGTTTTATATGCCTTGTGTGGAATATGTGCAGTTCACACTATTTTTATGCAACATTGTCCAAAGCATTTGAAGTTCCTTGAGTTTCACGTTTTAGCttttatatatgattaataatattatctagattgtttgtttgtttgtttgtttgttcggttgttctttgcttttttaaaaaaatttgaataacaCTGTTGTATATTTCTGGTTCACTGTTTGACTGTTATTAAAAT

Function

symbol description
pou2f3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human POU2F3 (POU class 2 homeobox 3).

NR:

description
POU domain, class 2, transcription factor 3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09364 POU2F, OTF; POU domain transcription factor, class 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240855.1 False 2380 mRNA 0.48 13 23057206 23066572
XM_043240856.1 True 2408 mRNA 0.47 12 23057205 23064475

Neighbor

gene id symbol gene type direction distance location
zgc:194948 NA coding downstream 780 23054946 ~ 23056425 (-)
foxr1 zgc:171734,LOC107712932,LOC107691807,LOC107600773 coding downstream 2936 23050936 ~ 23054269 (-)
cenatac LOC107712938,LOC107600772,LOC107691808,LOC107664297,LOC107556429 coding downstream 7247 23045402 ~ 23049958 (-)
derl2 derl2,LOC107664304,LOC107744323 coding downstream 146334 22906901 ~ 22910871 (-)
rabep1 rabep1,LOC107691762,LOC107664300 coding downstream 156312 22883355 ~ 22900893 (-)
oafb LOC107691805,LOC107744339,LOC107556424,LOC107664291 coding upstream 3538 23070110 ~ 23076394 (-)
pde9ab LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC108427349,LOC108259736,LOC571737 coding upstream 11984 23078556 ~ 23084925 (-)
slc37a2 slc37a2,LOC107691751 coding upstream 19723 23086295 ~ 23097259 (-)
ccdc15 ccdc15,LOC107691749,LOC107712940,LOC107556428,LOC107744316 coding upstream 32268 23098840 ~ 23104975 (-)
hepacamb LOC107712936,LOC107556427,LOC107744315,LOC107691804,LOC107664307,LOC107600797 coding upstream 39357 23105929 ~ 23119144 (-)
G38747 NA non-coding downstream 19735 23036457 ~ 23037470 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding downstream 180768 22873971 ~ 22876437 (-)
G38634 NA non-coding downstream 264152 22791690 ~ 22793053 (-)
LOC122344815 NA non-coding downstream 1015938 22038360 ~ 22041267 (-)
G38767 NA non-coding upstream 279017 23345589 ~ 23345797 (-)
G38769 NA non-coding upstream 291002 23357574 ~ 23358147 (-)
G38892 NA non-coding upstream 600269 23666841 ~ 23669869 (-)
G38982 NA non-coding upstream 836047 23902619 ~ 23902898 (-)
G39034 NA non-coding upstream 910604 23977176 ~ 23978527 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 1173183 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 1231100 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 1437622 21612688 ~ 21619583 (-)
G38359 NA other downstream 1688157 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 2121108 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 60640 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 535664 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 685308 23751880 ~ 23756588 (-)
G38973 NA other upstream 820731 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 913092 23979664 ~ 23997739 (-)

Expression


Co-expression Network