foxr1 (zgc:171734,LOC107712932,LOC107691807,LOC107600773)


Basic Information

Item Value
gene id foxr1
gene name zgc:171734,LOC107712932,LOC107691807,LOC107600773
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23050936 ~ 23054269 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240857.1
TCTTTATGGACACCGCGACGTTTCTTGGGTTAAAAGAGACACTGGGGTTTATTTACAGACGTTTGCTGGCTCTTCTTACGTAGTCGACGACATGTATTTACAGCTTCGGTCCAGAAGCAGATTTCTCGACCTTCATTTGACCAGCGGTTTACACGACTGGGACATGAACGAGGAAATAAAGTTAACGACGACGACCGATCAGTTCTATCACGagCCTGAGGTACAACCTAACCTGTGGCTGATGGTGAATCCCAGTTTAGCCTGCCCCATAAAGTACCCCAGTGTTCACCCCAAAGCCCCAACACCCCCAAAACCGACTGCCCAGTCAGCGCTGCCAAGAACCGCCCCACCTGTTCTGGAACACAGTCTGCGCCCAGCGATACTGCCTGATGAGACCTGCCTGAATGAGTCAACGCATGAAACCTCCCTCTCCAGCGAGTATCAGTTCACAGACGAAGACGACGCTTCCTCTGTAGATGTGCCCGTCTGTCGTAAGGTGAAGGGTGTGCGGAAGGGAAGGACTCCCAAAGCGTCTACCCGCAAACTGGGTCTGACGCAGAACAGAAGGCTTCAGAGAGCCCTGCAGGACAGTTTGAACCTGAAGAACGGAGGATGGCCTCGGCCTCCCGTGAACTACTGCATCCTCATTGCGATGGCGCTCAGCAGCAGCCGCAACGGCAGTCTTAACGTGCAGCAGATCTATAACTTCACCAGAGAGCACTTCCCCTTTTTCCTTACAGCTCCAGATGGGTGGAAAAACACAATCCGCCATAATCTGTGTTTCAGCAACAGTTTTAAAAAGACCCCGCAGCAGGTGTCCGGAGACGGCAAGAGGAAGTCGTGTCTGTGGCACCTGACCCTGGATGGCCGACAGAGACTGAGAGATGAGATTAACACCCTTACGGGAGACTCCTTCAGAATGCTGAAGAGGAGCATGAACTACCCAGATATGATTCAAGCACTGTTAGAGCTGTGATCCGACTTTGACCCCTACGACCTCTTCAGGCTGGACAAGTGGACCTGCTCtcatttgattttctttctgaAACTGTGAATGTTAGCACTTTCTGTTATTACTATTCTTGTGTAACActttctttttgtgtgtctgtcactCTTATTTCTTCAATGACGCATTGTGccttataaaataaacaaatgcattaa
>XM_043240858.1
CTTTATGGACACCGCGACGTTTCTTGGGTTAAAAGAGACACTGGGGTTTATTTACAGACGTTTGCTGGCTCTTCTTACGTAGTCGACGACATGTATTTACAGCTTCGGTCCAGAAGCAGATTTCTCGACCTTCATTTGACCAGCGGTTTACACGACTGGGACATGAACGAGGAAATAAAGTTAACGACGACGACCGATCAGTTCTATCACGATGATAAGCGGACCGACCAGTACCTGGCGCAGTGGCACTACGCGCGGATCTCCAGGAGATCTCTCCCCGACGCGGAGCAGAGGAGCGGCCGCCTGCCCCTCAGCAGCGGAGagCCTGAGGTACAACCTAACCTGTGGCTGATGGTGAATCCCAGTTTAGCCTGCCCCATAAAGTACCCCAGTGTTCACCCCAAAGCCCCAACACCCCCAAAACCGACTGCCCAGTCAGCGCTGCCAAGAACCGCCCCACCTGTTCTGGAACACAGTCTGCGCCCAGCGATACTGCCTGATGAGACCTGCCTGAATGAGTCAACGCATGAAACCTCCCTCTCCAGCGAGTATCAGTTCACAGACGAAGACGACGCTTCCTCTGTAGATGTGCCCGTCTGTCGTAAGGTGAAGGGTGTGCGGAAGGGAAGGACTCCCAAAGCGTCTACCCGCAAACTGGGTCTGACGCAGAACAGAAGGCTTCAGAGAGCCCTGCAGGACAGTTTGAACCTGAAGAACGGAGGATGGCCTCGGCCTCCCGTGAACTACTGCATCCTCATTGCGATGGCGCTCAGCAGCAGCCGCAACGGCAGTCTTAACGTGCAGCAGATCTATAACTTCACCAGAGAGCACTTCCCCTTTTTCCTTACAGCTCCAGATGGGTGGAAAAACACAATCCGCCATAATCTGTGTTTCAGCAACAGTTTTAAAAAGACCCCGCAGCAGGTGTCCGGAGACGGCAAGAGGAAGTCGTGTCTGTGGCACCTGACCCTGGATGGCCGACAGAGACTGAGAGATGAGATTAACACCCTTACGGGAGACTCCTTCAGAATGCTGAAGAGGAGCATGAACTACCCAGATATGATTCAAGCACTGTTAGAGCTGTGATCCGACTTTGACCCCTACGACCTCTTCAGGCTGGACAAGTGGACCTGCTCtcatttgattttctttctgaAACTGTGAATGTTAGCACTTTCTGTTATTACTATTCTTGTGTAACActttctttttgtgtgtctgtcactCTTATTTCTTCAATGACGCATTGTGccttataaaataaacaaatgcattaa

Function

NR:

description
forkhead box protein N5-like isoform X1

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240857.1 False 1167 mRNA 0.50 5 23050936 23054269
XM_043240858.1 True 1277 mRNA 0.51 6 23050936 23054268

Neighbor

gene id symbol gene type direction distance location
cenatac LOC107712938,LOC107600772,LOC107691808,LOC107664297,LOC107556429 coding downstream 978 23045402 ~ 23049958 (-)
derl2 derl2,LOC107664304,LOC107744323 coding downstream 140065 22906901 ~ 22910871 (-)
rabep1 rabep1,LOC107691762,LOC107664300 coding downstream 150043 22883355 ~ 22900893 (-)
vps37d si:ch211-284f22.3,LOC107600766,LOC107691764,LOC107744342,LOC107561583,LOC107709757,LOC107689385 coding downstream 176065 22844746 ~ 22874871 (-)
prkrip1 prkrip1,LOC107691809,LOC107600793,LOC107689383 coding downstream 215613 22832643 ~ 22835323 (-)
zgc:194948 NA coding upstream 677 23054946 ~ 23056425 (-)
pou2f3 pou2f3,LOC107600771,LOC107712933,LOC107691752,LOC107556425,LOC107744320,LOC107664296 coding upstream 2936 23057205 ~ 23066572 (-)
oafb LOC107691805,LOC107744339,LOC107556424,LOC107664291 coding upstream 15841 23070110 ~ 23076394 (-)
pde9ab LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC108427349,LOC108259736,LOC571737 coding upstream 24287 23078556 ~ 23084925 (-)
slc37a2 slc37a2,LOC107691751 coding upstream 32026 23086295 ~ 23097259 (-)
G38747 NA non-coding downstream 13466 23036457 ~ 23037470 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding downstream 174499 22873971 ~ 22876437 (-)
G38634 NA non-coding downstream 257883 22791690 ~ 22793053 (-)
LOC122344815 NA non-coding downstream 1009669 22038360 ~ 22041267 (-)
G38767 NA non-coding upstream 291320 23345589 ~ 23345797 (-)
G38769 NA non-coding upstream 303305 23357574 ~ 23358147 (-)
G38892 NA non-coding upstream 612572 23666841 ~ 23669869 (-)
G38982 NA non-coding upstream 848350 23902619 ~ 23902898 (-)
G39034 NA non-coding upstream 922907 23977176 ~ 23978527 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 1166914 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 1224831 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 1431353 21612688 ~ 21619583 (-)
G38359 NA other downstream 1681888 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 2114839 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 72943 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 547967 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 697611 23751880 ~ 23756588 (-)
G38973 NA other upstream 833034 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 925395 23979664 ~ 23997739 (-)

Expression


Co-expression Network