sdf2l1 (sdf2l1,LOC107704634,LOC107755844,LOC107668746)


Basic Information

Item Value
gene id sdf2l1
gene name sdf2l1,LOC107704634,LOC107755844,LOC107668746
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1769436 ~ 1771792 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240861.1
CGGACTTGTCATGATGCGATTGGTTAGAAAGCGTGTCAGCGTTTGAATGGGGCTCTCCGTATCCGTCTTTCTGTGATGTACATACACGAGCTGTAACAATGGGACCGTTGAGAGTTATATTCGTCTTTCTCGATGTGGTTTTATTGTGTCTGATGTTTGTCCGAAGCGGCGCTCGAGATCTGGACTCCAGCTACGTGACGTGCGGCTCTCTGGTCAAACTGATGAACACCCGGCACAGCGTCAGACTTCACTCGCATGATGTCAAATACGGATCAGGAAGTGGCCAGCAGTCAGTAACCGGAGTGGATTCGGCCGATGATGCCAATAGCTACTGGCGTATCCGTGGAAAACCAGACAAAGTCTGCCAGCGCGGGGAGCCCATTCGATGCGGACAGGCCATCCGAATCACGCACATGAAGACCGGACGCAACCTGCACTCGCACCACTTCAGCTCCCCCCTCTCTAACCACCAGGAAGTGAGTGCGTTTGGTGAAAACGGAGAAGGAGATGATTTAGACGTGTGGAGCGTGCAGTGCGGCGAAACGTACTGGGAACGGGAGGACACCGTGCGATTTAAACACGTCGCAACGGAGGTCTTCCTCAGCGTAACCGGAGAGCAGTAcggtcagccaatcagaggccaGCGTGAGGTCCATGGAATGCCTTCACCCAATCAGCATAACTACTGGAAGGTGATGGAGGGGGTCTTTATTCAGCCCAGCAGTGATCCAGTGCGCCACGACGAGCTctgatgatgatgctgatgcATTATCGTAACAAGCAACTGAGAACTTCGCTCACACGCTGTGAAACCCTCTCTATATTTAACCCTTCAGTTTCTATAAAGTTGTACTTATTGGTCAAATTTATGCGATGCGATTTTTGACACGCGTCACCTGCAAAAAGGTTTGATTGCTAAAGATtggattgtgtttgtttgtacataAGGGATTACAATTCCTTTAGGATTCTGGGCTTTAAAAAGGgagtattttgtattatttatattaggtTGGATTACTACTGGAACAAATGGCATTGTACTATTAAAGAGTGTTTTTTGCACACATGAAATCTTTCCGACGTGGGAAAATATCAAATGGttgtttctctttcattttaagtttaagttttccATGTTACTGTCATTTGCAAACGTGGTTTTCTCCTCGCGCGTCCTGATAGGTACATCATTTGGTGAAAgctaaaataaagcttttgaaaAAAGA

Function

symbol description
sdf2l1 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Is expressed in hatching gland; nervous system; notochord; otic vesicle; and polster. Orthologous to human SDF2L1 (stromal cell derived factor 2 like 1).

NR:

description
stromal cell-derived factor 2-like protein 1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240861.1 True 1229 mRNA 0.47 3 1769436 1771792

Neighbor

gene id symbol gene type direction distance location
top3b top3b,LOC107705001 coding downstream 23740 1733099 ~ 1745696 (-)
ppm1f ppm1f,LOC107599133,LOC107741489,LOC107755823,LOC107668739,LOC107704983 coding downstream 37299 1721233 ~ 1732137 (-)
mapk1 mapk1,LOC107741490,LOC107704570,LOC107599610,LOC107386038 coding downstream 51535 1696432 ~ 1717901 (-)
p2rx2 p2rx2,LOC107704555,LOC108431687 coding downstream 166376 1597847 ~ 1603060 (-)
lztr1 lztr1,LOC107716547,LOC107704547,LOC107755835,LOC107668721 coding downstream 189808 1572148 ~ 1579628 (-)
ube2l3b ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding upstream 8373 1780165 ~ 1785389 (-)
LOC122344761 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding upstream 121988 1893780 ~ 1898590 (-)
LOC122344882 gnrhr4,LOC107715601,LOC107575089,LOC107690392,LOC107715190,LOC107691141 coding upstream 280913 2052705 ~ 2058733 (-)
LOC122346063 LOC107747844,LOC107554104,LOC107556635,LOC107667225 coding upstream 315993 2087785 ~ 2090156 (-)
LOC122345768 LOC107562125,LOC107690349,LOC107554462,LOC107715242 coding upstream 318360 2090152 ~ 2099181 (-)
G32586 NA non-coding downstream 2556 1766598 ~ 1766880 (-)
G32583 NA non-coding downstream 5788 1763275 ~ 1763648 (-)
G32581 NA non-coding downstream 6607 1762478 ~ 1762829 (-)
G32579 NA non-coding downstream 9579 1759644 ~ 1759857 (-)
G32572 NA non-coding downstream 102530 1666698 ~ 1666906 (-)
G32596 LOC107704652,LOC107741512 non-coding upstream 22712 1794504 ~ 1796557 (-)
G32654 NA non-coding upstream 77032 1848824 ~ 1882392 (-)
G32656 NA non-coding upstream 79436 1851228 ~ 1893075 (-)
G32675 NA non-coding upstream 194537 1966329 ~ 1966532 (-)
G32681 NA non-coding upstream 224484 1996276 ~ 1996843 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other downstream 75150 1673024 ~ 1694286 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 415022 1342606 ~ 1354414 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 433249 1312604 ~ 1336187 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323,LOC107751417 other downstream 1138310 622514 ~ 631126 (-)
ddr2l ddr2l,LOC107704361,LOC107725118,LOC107550294,LOC107723312,LOC107667359,LOC108444179 other downstream 1186341 556654 ~ 583095 (-)
G32676 NA other upstream 194845 1966637 ~ 1967748 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other upstream 248304 2020096 ~ 2022922 (-)
G32857 NA other upstream 724712 2496504 ~ 2554146 (-)
snrnp27 snrnp27 other upstream 808756 2580548 ~ 2585452 (-)
add2 add2,LOC107668755 other upstream 814795 2586587 ~ 2605917 (-)

Expression


Co-expression Network