atp5l (atp5l,LOC107664523,LOC107597515,LOC107587353,LOC107722787,LOC107677432)


Basic Information

Item Value
gene id atp5l
gene name atp5l,LOC107664523,LOC107597515,LOC107587353,LOC107722787,LOC107677432
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8129121 ~ 8131172 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240863.1
GTATATTCCGCCTCCTCAATCGAAGGGTCCTTCGCTGGAGGTGACATTCATTGAAGGGCCCCGGTTTGTGGAGAGAAGCGGCGAATAAACCTTCACAGTCACAGAAACTATGGCCCAGGCGGTACAGAAACTTGTGGCTAAAGTGCCAACCTTGGTCGGCGCCGCTGTGACCTACTCTAAGCCCCGGTTAGCCACATTCTGGTATTACGCCCGTGTGGAGCTGGTGCCTCCCACCCCTGCCGAGATCCCAAAGGCCATCAGCGGCGTCCAGGATCTCCTCAAGGCCTTCCAGTCTGGACGGCTTGGTCAGACAACAGTGAGGGATGCTCTGAGGAACGGACTTGTTGCCACAGAGGTTCTGATGTGGTTCTACATCGGCGAGATCATTGGGAAGAGAGGCCTTATTGGCTATGATGTATAAATGTGGATTGTCCTTTTTGCTTATTCTCTTTGCTgagttttgtctgttttctttatCAGATTCTTGGAATCCAGgaactaaataaatgaagaataataataaa

Function

symbol description
atp5l Predicted to enable proton transmembrane transporter activity. Predicted to be involved in ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Predicted to be located in membrane and mitochondrion. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o). Orthologous to several human genes including ATP5MG (ATP synthase membrane subunit g).

NR:

description
PREDICTED: ATP synthase subunit g, mitochondrial-like

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02140 ATPeFG, ATP5L, ATP20; F-type H+-transporting ATPase subunit g

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240863.1 True 524 mRNA 0.50 3 8129121 8131172

Neighbor

gene id symbol gene type direction distance location
ftr83 ftr83,LOC107664511,LOC107712363,LOC107587475,LOC107722782,LOC107677412,LOC108429748 coding downstream 15024 8108715 ~ 8114097 (-)
ruvbl2 ruvbl2,LOC107664527,LOC107677411,LOC107597476,LOC107587476,LOC107722783 coding downstream 21097 8102585 ~ 8108024 (-)
ube2g1a ube2g1a,UBE2G1,ube2g1,LOC107597432 coding downstream 129127 7993298 ~ 7999994 (-)
ankfy1 ankfy1,LOC107597410,LOC107664513,LOC107587357,LOC107664399 coding downstream 136591 7976647 ~ 7992530 (-)
zzef1 zzef1,LOC107712353,LOC107748500,LOC107664397,LOC107598082,LOC107664510 coding downstream 155560 7938171 ~ 7973561 (-)
pdzd3b LOC107598091,LOC107722765,LOC107677407,LOC107587439,LOC107664508 coding upstream 345 8131517 ~ 8136607 (-)
abcg4a abcg4a,abcg4,LOC107717882,LOC107722792,LOC107677424,LOC107587350,LOC108429752 coding upstream 6936 8138108 ~ 8154780 (-)
LOC122345805 hinfp,LOC107677425 coding upstream 32999 8164171 ~ 8170627 (-)
dpagt1 dpagt1,LOC107587348,LOC107717886,LOC107597531,LOC107722798 coding upstream 40251 8171423 ~ 8175357 (-)
hmbsa hmbsa,LOC107717875,LOC107722788,LOC107597563,LOC107587344 coding upstream 72248 8203420 ~ 8210189 (-)
G34290 NA non-coding downstream 28421 8100486 ~ 8100700 (-)
G34276 NA non-coding downstream 115184 8013686 ~ 8013937 (-)
G34275 NA non-coding downstream 115570 8013347 ~ 8013551 (-)
G34265 NA non-coding downstream 191750 7936511 ~ 7937371 (-)
G34260 NA non-coding downstream 267292 7861475 ~ 7861829 (-)
G34314 NA non-coding upstream 66296 8197468 ~ 8260129 (-)
G34310 LOC107722772,LOC107587343,LOC107717878,LOC107597552 non-coding upstream 68058 8199230 ~ 8200082 (-)
G34309 NA non-coding upstream 85791 8216963 ~ 8218476 (-)
G34315 NA non-coding upstream 124687 8255859 ~ 8262919 (-)
G34332 atf5a,LOC107717872,LOC107722784,LOC107587340,LOC107597628,LOC107677421 non-coding upstream 135921 8267093 ~ 8270648 (-)
si:dkey-220k22.3 NA other downstream 407363 7718565 ~ 7721758 (-)
LOC122345606 LOC107712378 other downstream 417297 7706970 ~ 7711824 (-)
G33998 LOC108444092 other downstream 731968 7382346 ~ 7397153 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 1185918 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 1302939 6824171 ~ 6826182 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 29705 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 280710 8411882 ~ 8414806 (-)
timm8b timm8b,LOC107717885,LOC107598437 other upstream 298528 8429700 ~ 8431586 (-)
LOC122345093 NA other upstream 543057 8674229 ~ 8677718 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other upstream 798298 8929470 ~ 8930053 (-)

Expression


Co-expression Network