rnf128a (rnf128a,LOC107592278,LOC107687662,LOC107732618,LOC107680400,LOC107747815)


Basic Information

Item Value
gene id rnf128a
gene name rnf128a,LOC107592278,LOC107687662,LOC107732618,LOC107680400,LOC107747815
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11154539 ~ 11169552 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240865.1
TGTTTAGTTGCGTTACAAAAACACCTGTAGGCGCTCAGTAGGGAGCTATCGATTACTTGACTTTGCGGGACTACTTCTGGGTCATTTTAATAACCACATTTATTTCAAGCTTTGAACTTTGACCTGAACCGAAGGGATCAGCGGCGGGGTTGGTGTGCCGATCATGGGGCTTCTTGCGAGTCGGGATGTATTTTCGTGGCTGCTGGTGGCCTCTGTTTTTCAGGTGTCGAGTGTGTGTTTCGCGCAGGCCAGTTACCTGTGTACTGCATACCTGAACATTTCCTACTCGATCCCTGACAAAAACTTAACCACCTGGTTTCGAGAGGAGATGGGACTGTACGGACAAGACTCACCCAAAACTTCTGTTGTGGGGAACGTTTATTTAGCCGATCCGATTTTCGGCTGTGAAGAGGGCACCCTTTACCGGCAACCGAACGACTCGAGGGGCTGGATCGCCTTAATTCAGCGCGGTAACGGCTGCACGTTCACCGATAAAATTAACGTCGCGGCCATGAACGGAGCCGCAGCCGCTATAATATTCAACGACGATTTAGAAAATCGGGTCATTCAGATGTCCCACCCAGGCACGAGCATCGTCGCAGTCATGATTGGCAACTACCGTGGGATGGAGCTGGTCCAGCTGCTAGAGAAGGGCGTACCCGTTTCCATAGCAATAGAGGTCGGGAAGCAGCACGGTCCCTGGATGAGTCACTATTCGGTGTTTTTCGTCTCTGTCTCCTTCTTTATCGTTACTGCGGCGACTGTCGGATATTTCATCTTTTACTCGGCACGGAGATTGACCAGCCTCAGACAGCAGAACCGCAAACAGaaaaagctGAAAGCGGAAGCAAAGAAGGCAATTGGCCAGCTGCAGGTTCGCACACTGAGACAAGGGGATCAGGAGACTGGCCCTGATGCTGATGCCTGTGCAGTGTGTATTGACTTGTATAAACCAGGAGATGTACTATCAGTTCTTACATGCAAtcaTTTCTTCCATAAATCTTGCATAGAGCCGTGGCTGCTGGAGCACAGAACCTGCCCAATGTGCAAGTGTGACATTCTTAAAGCCCTTGGAGTTGAGATGGATGTTGAGGAGCAGCCACAGATTTCAGTGCCTGATTTCAGATCTTTTTCTACCTCTGAGGACCTGCAGAGCGAGACCGTGTCACAGACGCACAGTGAGACGGCATCCTCTGGATATGCGTCCATGCATGGAAACGAACACCTCAGTCCTGCTGAAGCTTCACAAAATGGTGTGCAAGAGGAGCAGTTGGATGTGTCGCCTCACTATGACAATCTTGCCTTCGAGGGTGACGTTGACAACCAGAGTGAAGTCAGGACCTGAgcagcacaaacaaacactgataAAATGCACTCACACACGAATGAGGGGTTTTGATTTGAGGACTTATCAAAGCACTGCTGAGCGCTTTTCTGATTAGTTTCTGACTAAGTGCCtataaattctctctctctctctctctctctctctctctctctctctctctctctctctgtgtgactTTGTGTCTGTGGGTGATCACAATGATTTCTGGGTCAATCAGAGgtcattttaattgtgtgtgtgtgtgtgtggttgatTCAGGGTATTATGATTTCTGATTCAGGGTTTGATTCCTACTGTGGTTGTGTTCTGGTTTTGAGACTCCCAGCGTCATCGTGATAAGCAGCTGtggagacacagagagagagagagatagagtgCTCCACCTGCTGTAAAACACTGGACTTAATGCATACTATACTTTTCCCCAGTTTTGTGgcttattaaattatattgttcCAGTTTTGATGGAAATTTTAAATTTCAGAAATATTGTGCCTTACACACACTTATGTATGTGTGCAAATGTATATCACTTGTTGCAATAGGCATAGATATAATATTGGTGGTTCTGAAGGAATGAGTTCtcttgattttaatatttaaataagggatgaaaatatttctttactCTTTCAAACGAATAGTACAGACAttaacattgtaaataaaatcttttatgaaata

Function

symbol description
rnf128a Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and late endosome. Is expressed in several structures, including EVL; digestive system; integument; periderm; and sensory system. Orthologous to several human genes including RNF128 (ring finger protein 128).

NR:

description
E3 ubiquitin-protein ligase RNF128-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10629 RNF128, GRAIL; E3 ubiquitin-protein ligase RNF128

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240865.1 True 2032 mRNA 0.46 7 11154539 11169552

Neighbor

gene id symbol gene type direction distance location
LOC122346179 LOC107747816,LOC107597221,LOC107687664,LOC107592359,LOC107732598 coding upstream 18454 11127127 ~ 11136085 (+)
LOC122345519 LOC107747818,LOC107687663,LOC107599955,LOC107680407,LOC107726394 coding upstream 30190 11109781 ~ 11124349 (+)
LOC122345703 LOC107687703,LOC107599954,LOC107672740,LOC107747828,LOC107592360,LOC107599982,LOC107687702,LOC107747827 coding upstream 55202 11073890 ~ 11099337 (+)
eif1axa eif1axb,EIF1AX,eif1ax,LOC102359197,LOC107726370 coding upstream 109968 11041140 ~ 11044571 (+)
rps6ka3a rps6ka3a,LOC107687667,LOC107599949,LOC107726369,LOC107672778,LOC107592284 coding upstream 113417 11029087 ~ 11041122 (+)
tbc1d8b tbc1d8b,si:dkey-110k5.6 coding downstream 661 11170213 ~ 11186674 (+)
mtmr2 mtmr2,LOC107747813,LOC107597225,LOC107592277,LOC107732604,LOC107680397,LOC107687656 coding downstream 28659 11198211 ~ 11204226 (+)
fam76b fam76b,LOC107680374,LOC107597227,LOC107687655,LOC107592275 coding downstream 40824 11210376 ~ 11217745 (+)
cwc15 cwc15,LOC107597228,LOC107592276,LOC107732607,LOC107747811 coding downstream 48971 11218523 ~ 11222820 (+)
acsl4b acsl4b,LOC107747809,LOC107687654,LOC107597230,LOC107732603,LOC107680372,LOC107592357 coding downstream 54402 11223954 ~ 11232994 (+)
G35229 NA non-coding upstream 135347 10945056 ~ 11019192 (+)
G35202 NA non-coding upstream 316172 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 338238 10813457 ~ 10816301 (+)
G35081 NA non-coding upstream 606914 10547221 ~ 10547625 (+)
G35043 NA non-coding upstream 820731 10333219 ~ 10333808 (+)
G35267 NA non-coding downstream 17702 11187254 ~ 11187694 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding downstream 34948 11204500 ~ 11209405 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding downstream 213118 11382670 ~ 11387170 (+)
G35309 NA non-coding downstream 235976 11405528 ~ 11405761 (+)
G35311 NA non-coding downstream 244489 11414041 ~ 11414688 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 4314 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 90093 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 220786 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 418480 10717531 ~ 10736059 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 1014806 10064217 ~ 10139733 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 97090 11266642 ~ 11303431 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 468964 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 754676 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 1079586 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 1344461 12514013 ~ 12528790 (+)

Expression


Co-expression Network