LOC122346182


Basic Information

Item Value
gene id LOC122346182
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4350227 ~ 4370478 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240871.1
ATGGATCCGAAGCGACCCCCCTTTCCGGGGCCCCCAGGGGTCACCCGCATGCCGTGGATGCCGTCTGCAGGAGATCAGGGGCCGTCGCCCGACCAGCCCTCATTGGGACGAGCCAGAGGTCTGGTTCTGCCTAAAGATGAACCTCTTCCCGGACGAAGTAGAGTACCTGGAGAAGTGCCTGTACGGTTTGGGAGCGCCATCACTGTAAGACAGCCTGCGGTGGGCGTTTCTAGAGGTGTGCGATTACCGACGGACGCCGGAGGTTTCGGAAGAGCCCGAGGGTTTCTGCTGCCCGGTTTTGGGATGGGCAGAGGGGCTCCTGTGGGGCCTGTGCCTACGCCGGACATCAAAAAAGCAGACGTACGGGAGAAGAGGCCTGTGCTGCAAACAGAGGTGACTCCAGCGATTGCTCAGATTGCGGCTCCTGGGCCGGGGTCATCGCTGATGTCCATGTTCAGGGGCCTGGGCATTGAACCGGGAAAGACATGGGGGAGAGGAGCCACGCCTGTTGGACGGGGGGCAGCAGGCGACTTGGGGACGGACGTCCAGTCGGCCGACCGCTCTGACTCGGAAAGGGAAGAATCGGGCTTAGAAGAATCCTTTAGtTTCCTGGGCAGAGGATTTGTTGGCGTTGGCCGAGCCGCGTTGCCTCATATAGGTGTAGGTCGTGGGCGATTGGCCCGTCGGGCCCCGTTTCTCCCGTTGCGGCCCCGGTCTCTGAAGAAGCACCGGTTCCTCCAGGAACGCCCCCGAAAGTTGAAGGAGCCTCTGCAGAAAACCGGAACAAAAGGCAGTCCTGTATCCATCGGGTCAAACTACATCCCCATCTGCTGCAAAAATGAAGCTGTGTTTCAGTACCATGTTACTTTCACGCCGAACATTGAGTCTCTGAGTATGCGCTTCGGTATGATGAAGGAGCACCGGTCTACGACGGGGGAGGTGGTGGCCTTTGATGGATCCATCCTCTATCTGCCGAAACGTCTTGAAGAGGTTGTTCATCTTAAAGCCGAGAGGAAAACCGACAATCAAGAGATCGACATTAAGATCCAGCTGACGAAGATTCTGCCGCCCAGCTCTGATCTGTGCATCCCGTTCTACAACGTGGTCCTAAGGAGAGTGATGAAATTACTGGGGCTGAAGCTGGTGGGCAGAAACCATTACGACCCCAACGCCGTTGTGATTCTCGGCAAACACAGGCTTCAGGTGTGGCCTGGATACTCCACCAGCATCAAGCACACCGATGGAGGCCTCTACCTCGTCGTGGACGTCTCGCATAAGGTGCTGCGAAACGACTCGGTGCTCGATGTCATGAATCTGATTTACCAGGGAAGCCGTGAGAGCTTTCAGACGAGTGCACGGCGGAGTTTGTGGGCTCGATCGCCATCACGCCGCTATAACAACCGCATTTCTACCGTGATCGACGACATCGAGTGGTCCAAGTCTCCCAAAGACACCTTCACCTTGGCTGATGGGACCGTCACCACGTTTGTGGATTACTACAGGAAGAACTATGGCATCGCCGTAAAGGAGCTGGACCAACCGCTGCTCATCCATCGTCCCAAAGAGAGGTCCAGACCTGGAGGAAAGGTCATGACGGGTGAAATCCTGCTGCTCCCGGAGCTCTCCTTCATGACCGGCATCCCCGAGAAGATGAGGAAGGACTTCAGAGCCATGAGGGTACAAATCAGATCTGACCGCACATCAACGTGGGGAGCCGAGCAGCACACCCGGAGCCTCAAGCAGCTGCTGCACAACATCAACAGCAGTAACGAAGCGCTCTCAGAGCTGGGTCGCTGGGGCCTCGGCGTCAGCCAGGAGATTCTAGTGACTCAAGGAAGAACTCTGCCCAACGAGACCATCTGCTTGCATTCAGCTTCTTTTATCAGTGACGCCTCCGGCGTAGACTGGTCCAGAGGTGGTTCGAGACCCCTCTATCAGCACCTTCTTCGGTTCTCCTGTATCTGTCTCCTGCTTGCTCTCGGTCAGGTTCCTCTGAACTGCTGGGCTGTTTTCTATCCCCGGCGGGCGACCGATCAGGCAGAGGAGCTGGTGACTACTTTTACTAAGGTGGCCGGACCAATGGGCATCAAAATTGAGCGGCCCATCCGCAGTGGAGCTCACGGGACGATCGTAACCGAGACCTTCATCAAGAGCATTCACTCTCAACTCACCAGCGAGGCTCTTATTCCCAGGTTATCAACGTTCGGACCATCTCTCAGCCAGAGGCAGAAGCTCCAGAGCATCGGCCGTCAGAAGATCCTTCTGCAGATTAACTGCAAGCTGGGAGGAGAGCTGTGGACGGGTGAACGCCTCCTCTGGGTTACCTTCCAGATGCCTCTACGAGGAGATAATCAGCAGCTTCAGGGTCTGTCTGCTGATGGCCCTGTGAAATACTACGCAGCCATTTCTCGCCGCCGGAGTAGACTACACTTCCCCGAGAAGATCGTCATCTATCGCGACGGCGTGTCTGACGGACAGCCCAAGACGGTGGAGCTTTACGATCCTCAGGTCCTGAAGTGCTTCGAGACCATCCCAACTACGATCCGGCTGGCTTTCATCGTGGTGCAGAAGAGGATCAGCACCACCCTGTACTCCTGCGGATCTGACCAGTTCGCACGCCCTCGCCGGAACCGTCCTGGACCACACCGCTACCAACAGAGACTGGTCGGTGTCCAAGAGCCGCTTCAGAGCGACTGA

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0030718 germ-line stem cell population maintenance biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0000966 RNA 5'-end processing biological_process
GO:0010991 negative regulation of SMAD protein complex assembly biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0071546 pi-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240871.1 True 2697 mRNA 0.57 18 4350227 4370478

Neighbor

gene id symbol gene type direction distance location
LOC122345409 htr7c,LOC107561270,LOC107707833,LOC107656814,LOC107560967,LOC102292089 coding downstream 30492 4287799 ~ 4319735 (-)
LOC122345410 hspb8,LOC107720866,LOC107561261 coding downstream 208324 4137531 ~ 4141903 (-)
slc39a14 slc39a14,LOC107656812,LOC107560970,LOC107561269,LOC107702220,LOC107707824 coding downstream 476338 3849493 ~ 3873889 (-)
susd2 LOC107656804,LOC107561267,LOC107702221,LOC107707826,LOC107560963 coding downstream 503057 3822118 ~ 3847170 (-)
kremen1 kremen1,LOC107656811,LOC107561268,LOC107560966,LOC107702222 coding downstream 540531 3753979 ~ 3809696 (-)
atad1a atad1a,LOC107702218,LOC107561272,LOC107656802,LOC107719316,LOC103469725 coding upstream 86341 4456819 ~ 4462417 (-)
galnt9 galnt9,LOC107600134,LOC107702212,LOC107719314,LOC103023100,LOC107570788,LOC108412666 coding upstream 117363 4487841 ~ 4557844 (-)
si:dkey-112e17.1 LOC107656819,LOC107548941,LOC107741260,LOC107672633,LOC107707820,LOC107600127 coding upstream 556849 4927327 ~ 4947953 (-)
zdhhc8b zdhhc8b,LOC107600124,LOC107672609,LOC107707819,LOC107741283,LOC107548914 coding upstream 578606 4949084 ~ 5001056 (-)
rnf215 rnf215,LOC107707831,LOC107656805,LOC107741259,LOC107672611,LOC107548928,LOC107600132 coding upstream 637608 5008086 ~ 5013941 (-)
G33109 NA non-coding downstream 251854 3607467 ~ 4098373 (-)
LOC122345411 NA non-coding downstream 298755 4050782 ~ 4051472 (-)
LOC122345413 NA non-coding downstream 381263 3967856 ~ 3968964 (-)
G33140 htr7c,LOC107755817,LOC107707833,LOC107656814,LOC107561270,LOC107702213,LOC107560967 non-coding downstream 445681 3898591 ~ 3904546 (-)
G33124 NA non-coding downstream 697339 3648466 ~ 3652888 (-)
G33300 NA non-coding upstream 489521 4859999 ~ 4902402 (-)
G33310 NA non-coding upstream 543403 4913881 ~ 4915751 (-)
G33330 NA non-coding upstream 654467 5024945 ~ 5027815 (-)
G33332 NA non-coding upstream 662085 5032563 ~ 5033954 (-)
G33333 NA non-coding upstream 663633 5034111 ~ 5053903 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 157146 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 451649 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 597463 3744675 ~ 3752764 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other downstream 1337408 2935743 ~ 3012819 (-)
G33175 NA other upstream 252012 4622490 ~ 4623058 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 2453693 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 2552368 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 3011868 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 3336492 7706970 ~ 7711824 (-)

Expression


Co-expression Network