git2a (git2,git2a,LOC107595928,LOC107752141,LOC107597287)


Basic Information

Item Value
gene id git2a
gene name git2,git2a,LOC107595928,LOC107752141,LOC107597287
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5859279 ~ 5884164 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240904.1
TAGCGTCGCTGTGAACTCAAACGTGTGGTCTGGGAGGGCAGATGGCACTCTTCTGCGATCTGATGGGCTGCGGGCGAGCGTTTCCGTAGTGTAGCTTTTAATGCATCATGACAGAGGCTCCGCTGCCGACTCGCCTGTCCTAATTTCAAGCTAGACGAGACGTACATTATTTCACGCAGGGCAGGCAGCGCTGGCGCACGCACACTCCTCCGTATGCGCGTCCTCTTCTGGAATGAGATCCGCTTTCGGTGATAAAACGCTTCTAAACGGATTCGCTCGTCATGTCGAAGCGGTGCGCGCTTTAAATTTGTCCGTGGACGAAACGATACATGGTGATACCGACGCTCCCGGAGACAAGGATGTCGAAACGGCTGCGAAATAGCGAAGTTTGTGCGGACTGCAGCAGTTCGGATCCTCGCTGGGCGTCTGTGAACAGAGGAGTTCTGATATGTGACGGGTGCTGTGGCGTTCACCGCAGTCTGGGTCGCCACAACTCACAAGTGCGCCATTTGTCAAACACGCCCTGGCCACCCACCCAGCTACAGaTGGTTCAGACATTATACAACAATGGTGCTAATGCAATATGGGAGCACACTCTGCTGGACCCGTCATCCGTCACGAGCGGGAAACGCAAACCCAATCCTCAGGATAAAGTCCACCCTAACAAAACAGAGTTTATAAAATCAAAGTATCAAATGCTGGCTTTCGTGCATCGTTTACCCTGTCGAGATGATGACAGTACAGCATCTGCTGATCTAAGCAAGCAACTTCACTCCAGCGTTAGAACCGGCAATCTTGAGACCTGTTTGCGGTTACTGTCGCTTGGGGCTCAAGCCAACTACTTCCATCCGGAGAAAGGGAACCCGCTGCACATAGCGGCTAAAGCAGGCCAGGTATGTCAGGCTGAGCTTCTCTGTGTGTACGGGGCAGACCCTGGTGCTCCGGACTCCTGCGGCAAAACACCCATCCACTATGCAAGGCAAGCTGGCCATCAGGACCTGGCAGACAGACTGGTGGAAATACAGTACGAGCTCACAGACAGGCTGGCCTTCTATCTCTGTGGGCGGAAGCCTGACCACAAGAATGGACAGCATTTCATTATACCGCAGATGGCGGATAGAAACGTCAGTCTGGAGTTAACAGAGTTTGCAAAAGctgcaaaaagaaaactgcaGTCTCTCAGCGATCATTTGTTTGAGGAACTGGCGATGGACGTGTACGATGAAGTCGATCGAAGAGAGACCGATGCAGTTTGGCTGGCCACTCAGAACCACAGCACCTTGGTAACGGAGACGACAGTCGTGCCTTTCCTTCCTGTGAACCCGGAGTACTCGTCGACACGAAACCAGGGAAGGCAGAAGCTGGCGAGGTTTAACGCTCACGAATTTGCGACACTCGTGATCGATATCCTAAGCGATGCAAAGCGACGGCAGCAGGGGAACTCCGTCTCGAGTCCTAAAGACAACGTCGACGTCTTCTTCAAAAGCGCGGGCAGCCGTCACGGAAGTGAAAGCCAGGAAACCGACCAGCCGGATTATGACAGCGTGGCGTCCGATGAGGACACGGACACCGATTTACGAGTGGGAAAAGCAGACCGAGCTAAGAGCCTGGACTCTGATCTGTCCGACGGACCGGTTTCCGTGCAGGAGTTCCTGGAGGTGAAAAATGCGCTTTCGGCCTCGGAGGCCAAAATTCAGGAACTGATGAAGGCCAACAGCAATCTGAGCGAGGAGCTGAGAATGATGCAGAAAAAGCTGCAGTCTCTGCAAAGCGAGAACAGCTCTCTCAGGCGGCAGGTCTCCGCTCAGCAGCCCTATCAGGCCCCCGGCGGCCCTGACCACCCCAATCCCTCCAgtccctcttcctcttcctcctcttcctcctcctctgccCTGAAACGCCACCTCTCTGCACGGGCCAGCCGCCCCATGTCTATGTATGAAACCGGCTCTGGCCTGAAGCCTTTTCTCCCCAAGGGAGAGACCCCTTATCCCGAGGAGACCTTCCCCACCCTGCAACCCTTCCCGACCTATATGGGAAAAGGTGCGTTTGTGGCCGCCTCCTCTTCCCTCCCCTTCCTCCCCTCCTCATCCTCCCCGTCCTGTTTGCGAGATCCTCAGGGGCCCGGACGGAAGCGGCCGGAACCCTTGGCCTCGTCTCCATCCTCCTCGACTCCCATCCGTCCCTTGTCCCCTTACACCTGTTGTGCTCCACGCATCGGCGTGCATGAACGCTCCCTCCACCAACCCACCGGGGGCTGCTGTTTTCATCTGGGCTCCAAGTTCGACAAGCAGAGCAGCGTGTCCGATGGCGACTATGACAACACGGTTAACGAATCTGATCTGGACGACTCTGGCTTCGGCCGAAGATGTCGCCTGCGCAGCAGCGGCTGGATGGGAGAGAGCGGCTCTATACCCGAGCTGGACGATCACGAGTGTGAGCCCGACCCCAGCCTGCCCAGCACCGAAGACGTCATCCGGAAAACTGAGCAGATCACCAAGAACATCCAGGAGCTGCTGAGGGCTGCGCAGGAGAACAAGCATGAGAGCTTTACACCCTGCTCAGAAAGAATACATGTGGCTGTAAATGAAATGGCTGCCCTGTTCCCCAAGAGGCCGCGCTCCGAGACGGTGAGGAGCTCTTTGCGATTGTTAACGTCCAGCGCGAACCGGCTGCAGAGCGAGTGTAAGAAAGCGTCTCCTCTGGAGAGCAGCcccgcagcggacgtgcagctGGTCACTCAGCAGGTCATCCAGTGCGCTTATGACATCGCCAAAGCTGCCAAGCAACTCGTTACCATAACCACCAAAGAGAACAGCAACTGAGTCCCGCCTGTAATGCTACCCCGGTGTTATTTAATCGGTATTTATTAGGTACGTcgcagggtttttttgtttgtttgttttttcatttaagctgtatttgcatgtttttattttttaatttaaggtgtCCGTCGTCTGTGTCGTTCGGCTTGAAGCCATAAGATAAAGCCTGAGGTGCTCTCAAGGGTTTTGTAaggatgtgtgtatgtgtggacctgtgtgtgtttgactagATGGAGAAGGATTTGAGCGGAAAAGACTATTCTGCACTATTCTGACTAATTTTACCTCTTCATATTCAAACATttggtagatttttttttttttttttttttatgtcagttaaacataatgtgtaataataataaaaaaaaaatctattgtacAAAATGTTCTGTTGACGCGGTCAGGTAGGGCTAGTGTAGGTACAGAtacaataaacataattataaagATGTCAAATTAtctattaatgaaaaaaaacatcgtATTTCATTTATGTCCAAAGTGAATGCCCTTTTCTCTGTTGGATAAATCTGGTGGCTataatattcagatttacaGTGCGCATTGGGGTCGACCGATTATCGGTGTtgatattaagcatttttatggTTATCGAGTTTCAAAACCGATTTGCAgataaagttatttaaatgcatttaaagagagctttttttaaagcccttattattcttcattttcacatttatattcgTTTTTATGCCAGGTATGTATAAAATAcgggttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctaagcATCAGccctaaaaaaacacattggtTGACCTCTagtatgcataaaaaaagtgaggatgtatatatatatctatatctatatatatcggCATCAGCCCTAAAAACCCATTGGTTGACCTCTAGTATGCATAAAAAAGTGAAGAAATGTTAAGTAAACTTAAGCTTATATTGCATCAGTTACTTGGAggtcaaagtattttttttcaatatgctGCAGATGAACAATCTCCACCAGCAGATACTGATACTGTGTTTGTGATCATTTAAACGTTTTTTGGTTTGTGTAGATAGTTCCTCATATTGTGctttcatttcagtgttttcatttatttcctctCTACTTCTAGTCCAGCCCGATCAGGTTAGTGCAGCTCCAGCTCAGTGTTAAACCCCACCTCCTTCGAGTGTTCGTAGTCGTTTAGATGAACCTCCTTCCACTCGTTCACGTCATTGCTGTCCCTGTGGTTAAGAATAAAAcgtgttctttattttttaaaaacttaatttatccTTTTGAGCTTCGTTTGTTGCTCCAGGGTTTTTGTTCACTTCAGAAACTGAGCCATAATAAAGTGAAACGTAAAACA

Function

symbol description
git2a Predicted to enable GTPase activator activity and metal ion binding activity. Acts upstream of or within cell migration involved in gastrulation and regulation of cell morphogenesis. Orthologous to human GIT2 (GIT ArfGAP 2).
git2 Predicted to enable GTPase activator activity and metal ion binding activity. Predicted to be involved in presynaptic modulation of chemical synaptic transmission and regulation of synaptic vesicle exocytosis. Predicted to act upstream of or within behavioral response to pain. Located in nucleoplasm.

NR:

description
ARF GTPase-activating protein GIT2-like isoform X11

GO: NA

KEGG:

id description
K12487 GIT2; G protein-coupled receptor kinase interactor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240904.1 True 4237 mRNA 0.48 22 5859279 5884164

Neighbor

gene id symbol gene type direction distance location
gltpa gltpa,gltp,LOC107752155,LOC107654619,LOC107741237,LOC107597288,LOC107595968 coding downstream 9640 5843678 ~ 5849639 (-)
trpv4 trpv4,LOC107752140,LOC107741238,LOC107654595,LOC107672638 coding downstream 16282 5820352 ~ 5842997 (-)
mmab LOC107752154,LOC107597358,LOC107654603,LOC107672637,LOC107741242,LOC107595926 coding downstream 188150 5668793 ~ 5671129 (-)
kctd10 kctd10,LOC107597295,LOC107595924,LOC107672630,LOC107752136 coding downstream 206250 5648255 ~ 5653029 (-)
foxn4 foxn4,LOC107654613 coding downstream 229993 5621069 ~ 5629286 (-)
slc6a4b slc6a4b,LOC107654599,LOC107597334,LOC107595929,LOC107672619,LOC107741230,LOC108434249,LOC106580268 coding upstream 14731 5898895 ~ 5909991 (-)
trnak-uuu_104 NA coding upstream 72135 5956299 ~ 5956371 (-)
foxd1 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 coding upstream 202637 6086801 ~ 6089556 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107596806,LOC107718646,LOC107700928,LOC107596181 coding upstream 211993 6096157 ~ 6099701 (-)
enc1 enc1,LOC107655934,LOC107757521,LOC107570861,LOC107700930,LOC107596864 coding upstream 348102 6232266 ~ 6243818 (-)
G33446 NA non-coding downstream 174995 5679683 ~ 5684284 (-)
G33434 NA non-coding downstream 204515 5654080 ~ 5654764 (-)
G33423 acacb,LOC107752147,LOC107654593 non-coding downstream 238574 5618265 ~ 5620705 (-)
G33409 LOC107684993,LOC107597297,LOC106585658 non-coding downstream 257075 5601409 ~ 5602204 (-)
LOC122344983 LOC107684988,LOC107597340,LOC107752133,LOC107741245,LOC107672606 non-coding downstream 264105 5588045 ~ 5595174 (-)
G33533 NA non-coding upstream 11964 5896128 ~ 5897353 (-)
G33542 NA non-coding upstream 61825 5945989 ~ 5946874 (-)
G33544 NA non-coding upstream 69112 5953276 ~ 5959213 (-)
G33549 NA non-coding upstream 85078 5969242 ~ 5982803 (-)
G33610 NA non-coding upstream 287980 6172144 ~ 6172412 (-)
G33175 NA other downstream 1236221 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 1666198 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 1960701 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 2106515 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2899102 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 940007 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 1038682 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1498182 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 1822806 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 1834401 7718565 ~ 7721758 (-)

Expression


Co-expression Network