LOC122346201 (tchp,LOC107741236,LOC107752150,LOC107595960)


Basic Information

Item Value
gene id LOC122346201
gene name tchp,LOC107741236,LOC107752150,LOC107595960
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5851966 ~ 5857677 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240906.1
CATGGCTCTGCCGACGCTCTCGTCTCGCTGGCCGGGTCGAGAGCGGGACCTGGTGCGGCAGCGGGAGCAGGAGGCTCGCTGGAGGCAGCAGTGGGAGCTGAACTCCCGGTACTTCAGAGAGCAGGAGGTCCGCAGCAGCAAGCAGGCGCAGTGGAGCTCACGCCAGTCCTTCCAGCGCAGTATGTCGGCATTTCAGCGGGAGCGAATGAAGGAGGAGAAGCAGCGGAGACTGCAGGAGCGCAGGGAGCGTCTGAGGACGATGCTCCAGGAAGAGAGAGACCAGTTGGAGGCCGAGCTCAGAAACGTTCGTCCAGACAGAGACACGCTGACCAGACAGCTGGTGGAGAAAACGGATGCCCTCCGGTCTGccagagaagagaggaggaaaaatcTTGCACAGGAGCTGCTAAAGGAACACTGGAAGCAGAACAACCCAGAACTGAGGAAGGTGGAGACAGAGCTGCACAAAGATCACGTTGTGAGCCGGTGGCAGGTTCAACAGCAGGAGAAAAACGGGCTGATGAGAAAACTCAGGAGGAGAAACTGCGTTTTGAGAATGAGTATGAGAGGACGAGACGAGAGGCTCTGgagagaatgaaagaagaagaggagaagagaagacAAGAGGAAAGGAAGCGAGCCGAAGACCTCCGTAAACAGATGGAGGAGCTCAGTCTACGAGAACAGGAAgCTGAGCGCCTTAAGCAGGAACAGGAAGCTCTAATGTCTCAACGCTGGGAGCTTGAGAAGCTAGAGGATGAGAGGAAGAGGATGGAGGAAAGCAGGAGGAAAACTGAATTTGGGCATTTCTTGACTCGTCAGTACCGTGCTCAGCTGAAAAGGAGAGCACAGCAGGTGCAGGAGGAACTGGAGGCAGACGGCAAGATCCTGGCCGCGCTGCTGGAGGGAGAAGTGGAGGAGCAGAGACTGGAGAAAGCCAGGAGACAGAGAGCCGTCGCCGACGCCGCCTGGATGAAGAGAGTCATCGAGGAGCAGCTCCAGCTGGAGAGGGAGCGGGAGGCAgagtttgatattttgtatcGGGAGGAAGCTCAGCGTGTTTGGGAGAAGAGAGAGGCGGAGTGGGAGAAGGAGAGGAGAGCCAGAGAGAGACTCATGCGGGAGGTCCTGACAGGACGTCAGCAGCAGCTGGAGGAACGAATGAAGGAGAACAGACTGGCCAGGGAGGAGTCTCTGCAGAGGAGAGAAGAGCTGATCCAGCAGCTGGAGCGAGAGAGACTCACCCGACGGCAGGAGAGGGATCAGCAGGAAGGAGCCCGCTCCGCTCGCATGCTGGAGATCAACGCACAGGTGGAGCAGAGGCGCAGGGAACAGTGGGAGGAGCTGCAGAGACAAGAGCAAGAAGAACTACGAGAGAGGGAGGAGCTTAGGCAGCAGGAGGAGGAGCTTCATCTTGAGACAGAGAGAATGGTTCGGCAGGGCTACAAGGAGAGAATTCACAGCAGACCCCGGTCAGCATGGACATGAGAGCACTTCACAGGAAGAGTGTTTGTGCCACATCCCCTTTAGGATGCTAGGAGTGTTTTCTAGCACCGTTTCTCAGTCACAATCGGGGAAGTCTGTGTTGGCCAATTTGTGCTTAAATGAGGTCCGGGTTCCCCCtcacaaaatgctttttatatataaaatcatttacagTATGGCTTCCGTAAATACTTGTTTAGGTAAGTTCGCAGTTTTACATTTGCTCTGCGCCTGTGCTGAGCATGTACGCCTGTTTTTATACGTCGATCGTTTTGTATAGATGAATTTCGATGCTGACAAGGTTTTCAATAAAGGAAATGTTACCCGTT

Function

symbol description
tchp Predicted to be involved in apoptotic process. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in keratin filament. Orthologous to human TCHP (trichoplein keratin filament binding).

NR:

description
PREDICTED: trichoplein keratin filament-binding protein isoform X1

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16811 TCHP; trichoplein keratin filament-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240906.1 True 1814 mRNA 0.55 12 5851966 5857677

Neighbor

gene id symbol gene type direction distance location
fam222a fam222a,LOC107752139,LOC107654618,LOC107597290,LOC107741239,LOC107672614,LOC107597291,LOC107580258 coding upstream 47012 5748118 ~ 5804954 (+)
mvk LOC107741241,LOC107672634,LOC107654617 coding upstream 172935 5671285 ~ 5679031 (+)
ube3b ube3b,LOC107654616,LOC107752137,LOC107597296,LOC107595925,LOC107741240,LOC107672623 coding upstream 185139 5653575 ~ 5666827 (+)
acacb NA coding upstream 231266 5595095 ~ 5620700 (+)
rusc2 rusc2,LOC107752133,LOC107684988,LOC107741245,LOC107595920,LOC107672606,LOC107597340 coding upstream 258787 5572311 ~ 5593179 (+)
ankrd13a ankrd13a,LOC107595961,LOC107597335 coding downstream 27244 5884921 ~ 5894400 (+)
sgsm1a sgsm1,LOC107654621,LOC107752142,LOC107672618 coding downstream 62897 5920574 ~ 5954193 (+)
gatc LOC107752156,LOC107654604,LOC107672604,LOC107741226,LOC107595969 coding downstream 98749 5956426 ~ 5958413 (+)
fcho2 fcho2,LOC107655928,LOC107700925 coding downstream 125471 5983148 ~ 6019840 (+)
tmem174 NA coding downstream 171949 6029626 ~ 6032632 (+)
G33348 NA non-coding upstream 312568 5469072 ~ 5539398 (+)
LOC122346031 NA non-coding upstream 383935 5456097 ~ 5468031 (+)
G33206 ankle2,LOC107729791,LOC107597302,LOC107672626,LOC107741250,LOC107684979,LOC107595914 non-coding upstream 449182 5401315 ~ 5402784 (+)
G33257 NA non-coding upstream 481445 5368434 ~ 5370521 (+)
G33251 NA non-coding upstream 515330 5336349 ~ 5336636 (+)
G33453 NA non-coding downstream 1613 5859290 ~ 5880529 (+)
G33471 NA non-coding downstream 5655 5863332 ~ 5897366 (+)
G33492 NA non-coding downstream 221406 6079083 ~ 6079423 (+)
G33499 NA non-coding downstream 267653 6125330 ~ 6165323 (+)
G33500 NA non-coding downstream 307728 6165405 ~ 6165623 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other upstream 202081 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other upstream 203919 5625267 ~ 5648047 (+)
fbrsl1 LOC107656817,LOC107600129 other upstream 949563 4644101 ~ 4902403 (+)
G33174 NA other upstream 1228906 4622507 ~ 4623060 (+)
G33015 NA other upstream 1707570 3605186 ~ 4144396 (+)
tnpo1 tnpo1,LOC107700926,LOC107655929,LOC107596175 other downstream 102155 5959832 ~ 5982816 (+)
G33494 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 other downstream 229585 6087262 ~ 6088562 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other downstream 390118 6247795 ~ 6255340 (+)
G33664 NA other downstream 615670 6473347 ~ 6491986 (+)
dab2ipb dab2ipb,LOC107693836,LOC107710761,LOC107700936,LOC107726296 other downstream 759599 6617276 ~ 6762808 (+)

Expression


Co-expression Network