derl2 (derl2,LOC107664304,LOC107744323)


Basic Information

Item Value
gene id derl2
gene name derl2,LOC107664304,LOC107744323
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22906901 ~ 22910871 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240907.1
CCTTTATTCGCTTACCCGGGTGATGACGTGTCAAGAAGGTGCCGGAAGCAGCGTTGTCGCTCCAAAAAATGGCATACCAGACAATCCGACAGGAATATTTACAGATTCCTGTAGTCACCAGAGCTTATACCACCGCCTGCGTTCTCACAACAGCTGCCGTGCAATTAGAACTCATCACACCTTTCCAGCTTTACTTCAACCCAGATTTAATATTAAGGAACTATCAGgTATGGCGGCTAATAAccaactttttgttttttggtccGGTTGGGTTCAACTTCTTATTCAACATGATATTTTTGTACCGGTACTGTCGGATGCTGGAGGAGGGGTCCTTCAGAGGGAGGACCGCTGACTTTGTCTTTATGTTTCTCTTCGGTGGCCTTCTCATGACTATATTTGGCACGTTTGTGAATCTTGTGTTCTTAGGTCAGGCTTTCACCATCATGCTCGTGTACATATGGAGCAGGAGGAACCCAAATGTGCGCATGAATTTCTTCGGCCTTTTGAATTTCCAGGCCCCGTTCCTCCCGTGGGTGCTCATGGGATTCTCTCTGCTGCTGGGAAACTCCATCATCGTGGATCTTTTAGGCATCGCAGTAGGACACGTGTATTACTTTTTGGAGGATGTGTTTCCCAACCAACCAGGTGGTGGCAGATGGCTGAGGACTCCCTCCGTCCTTAAGATGCTGTTTGACACACCTGAGGAAGATGCCAACTACAACCCTCTCCCTGAGGACCGTCCAGGAGGCTTTGCCTGGGGTGAGGGTCAGAGACTCGGAGGCTAGTCTCAGCCCCCTGTGCCTGCCGCTTAATGGACATCTCTGagagcaagagaaagaaaatcttttttttctcgaCTTGTTTCTCTTGTGTACAAAGAACAGCAGCTCCACCGAGCAAGAGGGAGACTTGTAGTTTGTGTGCACGGAAATCATACGCCTCGAAATGTCTGCAAGGCCCATGACGCTCCTCTGACTGTGGATTAAATggggtttaaaaaaagaactgacTTTTGATATGTTGCTGTTGCTGCCCTGAACAACAGCCATTACAAATCGAGCAGCTGTGAAAGACAAATATCTATTGATAGTCACCATTTTACttgttctttttccttttttttaagaataaatgtatgaaatcaG

Function

symbol description
derl2 Predicted to enable misfolded protein binding activity and ubiquitin-specific protease binding activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Hrd1p ubiquitin ligase ERAD-L complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human DERL2 (derlin 2).

NR:

description
PREDICTED: derlin-2

GO: NA

KEGG:

id description
K13989 DERL2_3; Derlin-2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240907.1 True 1148 mRNA 0.47 7 22906901 22910871

Neighbor

gene id symbol gene type direction distance location
rabep1 rabep1,LOC107691762,LOC107664300 coding downstream 6008 22883355 ~ 22900893 (-)
vps37d si:ch211-284f22.3,LOC107600766,LOC107691764,LOC107744342,LOC107561583,LOC107709757,LOC107689385 coding downstream 32030 22844746 ~ 22874871 (-)
prkrip1 prkrip1,LOC107691809,LOC107600793,LOC107689383 coding downstream 71578 22832643 ~ 22835323 (-)
upk3b LOC107691810,LOC107709747,LOC107600792 coding downstream 75167 22826309 ~ 22831734 (-)
rasa4 rasa4,LOC107691765,LOC107709756,LOC107744328,LOC107561580,LOC107689382,LOC107600782,LOC108260369,LOC108428505 coding downstream 83035 22793505 ~ 22823866 (-)
cenatac LOC107712938,LOC107600772,LOC107691808,LOC107664297,LOC107556429 coding upstream 134531 23045402 ~ 23049958 (-)
foxr1 zgc:171734,LOC107712932,LOC107691807,LOC107600773 coding upstream 140065 23050936 ~ 23054269 (-)
zgc:194948 NA coding upstream 144075 23054946 ~ 23056425 (-)
pou2f3 pou2f3,LOC107600771,LOC107712933,LOC107691752,LOC107556425,LOC107744320,LOC107664296 coding upstream 146334 23057205 ~ 23066572 (-)
oafb LOC107691805,LOC107744339,LOC107556424,LOC107664291 coding upstream 159239 23070110 ~ 23076394 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding downstream 30464 22873971 ~ 22876437 (-)
G38634 NA non-coding downstream 113848 22791690 ~ 22793053 (-)
LOC122344815 NA non-coding downstream 865634 22038360 ~ 22041267 (-)
LOC122346224 NA non-coding downstream 866867 22039901 ~ 22040034 (-)
G38543 NA non-coding downstream 896794 22008886 ~ 22010107 (-)
G38747 NA non-coding upstream 125586 23036457 ~ 23037470 (-)
G38767 NA non-coding upstream 434718 23345589 ~ 23345797 (-)
G38769 NA non-coding upstream 446703 23357574 ~ 23358147 (-)
G38892 NA non-coding upstream 755970 23666841 ~ 23669869 (-)
G38982 NA non-coding upstream 991748 23902619 ~ 23902898 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 1022879 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 1080796 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 1287318 21612688 ~ 21619583 (-)
G38359 NA other downstream 1537853 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 1970804 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 216341 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 691365 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 841009 23751880 ~ 23756588 (-)
G38973 NA other upstream 976432 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 1068793 23979664 ~ 23997739 (-)

Expression


Co-expression Network