vma21 (vma21,LOC107741184,LOC107565438,LOC107680358,LOC107756551,LOC107672888,LOC107597345)


Basic Information

Item Value
gene id vma21
gene name vma21,LOC107741184,LOC107565438,LOC107680358,LOC107756551,LOC107672888,LOC107597345
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11580834 ~ 11582813 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240918.1
GCATCATGTGACAAAAACCCGGAAGCTCAAATCACTCAAGATGTCGCAGAACGGAATTACGAGCTATTGAGTTCCCacgtctttcttctttttttggtcataattaaaaatacaaaaatgcaaaactacGATAAGACAACTTTGGACTCCATGCCCGCAAACGCGCCTGATTTCAGAGGGAATGACGGCTCGCTCGTTTCTGTACTCAAGACACTATTGTTTTTCACTCTTCTGATGATAACTGTGCCCATCGGACTGTATTTTGCATCAAAGTCTTTTCTCTTTGAAGCCTCTCTGGGATACTCCAGCAACGACAGCTACTTCTATGCTGCCATCGTTGCTGTGCTTGCTGTCCATGTGGTTCTGGCACTCTTTGTTTACGTTGCATGGAATGAGGGATCACGCCAATGGAGAGAGGGAAAACAGGATTAAGAAAGACGACAAAAACTGAAGGGACAGATGGAAACACACGTAACACACTGTCTTATTTTTCCTGAACTAGAGAATCATAATGGAGTGACGCCATCTctccctgtgtgtgtttacgttTCTCCTGAATGTCTCATCTATCAGAGAGATCATGCCTGATTTCTCCCTCATCTCACAGAATGGTGAAGGTCATCTTTGGTCTGGCTGGAGGTTGTGTAAGAAGGTGTTAGatgttaatttgtgtttttgtgcagggTTAATACAGGATGGCAGAGAAGACACATGGAAGTTCATTGTTCCTGCAGTATCATATTCTGACTCATTTCAGTCTATCCAGTAGTTGAATCCAATTCTAAATTCAAGCTGTTGTACACCTTAGGCTTTTTGTGTAAATTCAGTGTCTTCCCttgtatttttacacaaactACAGTGATCATGTAGACAGTTGCTTGTTTCAAATTAGTGTGCGTCTGTGtgattaagttaaaaaaaaaaaaaaaaaaactaaatccaaaaaatcatttcatgctgttttatttatcaattaaagCTGTTCTCCGGAACTTTCTCAGTTTTTACTGAAGCCTAAAGAGTATTGCAGTTCTTACTagacattttatcatttataaaaattgtttaaaatgacatttctgaatGGGGTACGAGTTTTATGTTGACATGTGTTCAATGTAGCAAATAAATCAGCATTCCATCTTC

Function

symbol description
vma21 Predicted to act upstream of or within vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in ER to Golgi transport vesicle membrane; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in X-linked myopathy with excessive autophagy. Orthologous to human VMA21 (vacuolar ATPase assembly factor VMA21).

NR:

description
vacuolar ATPase assembly integral membrane protein VMA21

GO: NA

KEGG:

id description
K23952 VMA21; vacuolar ATPase assembly integral membrane protein VMA21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240918.1 True 1146 mRNA 0.39 3 11580834 11582813

Neighbor

gene id symbol gene type direction distance location
npas2 npas2,LOC107672582,LOC107597247,LOC107741183,LOC107565421,LOC107680380 coding downstream 6871 11527062 ~ 11573963 (-)
radx LOC107672617,LOC107756553,LOC107680386,LOC107597314,LOC107680354 coding downstream 54797 11519575 ~ 11526037 (-)
brwd3 brwd3,LOC107672566,LOC107680390 coding downstream 118073 11442622 ~ 11462761 (-)
chmp1b chmp1b,LOC107672547,LOC104940072,LOC101476317 coding downstream 138413 11439109 ~ 11442421 (-)
cnga2b LOC107672575,LOC107733223,LOC107597245,LOC103911065,LOC108443773,LOC105893178 coding downstream 144562 11431860 ~ 11436272 (-)
mtnr1c mtnr1c,LOC107756550,LOC107741285,LOC107672899,LOC107680355,LOC108442058 coding upstream 1142 11583955 ~ 11599842 (-)
tnfsf10l4 LOC107741286,LOC107680360,LOC107565437 coding upstream 36297 11619110 ~ 11621440 (-)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280 coding upstream 67626 11650439 ~ 11652716 (-)
LOC122345659 NA coding upstream 99407 11682220 ~ 11689922 (-)
LOC122345938 NA coding upstream 121418 11704231 ~ 11707716 (-)
G35434 NA non-coding downstream 250468 11304281 ~ 11330366 (-)
G35522 NA non-coding downstream 268004 11311549 ~ 11312830 (-)
G35450 NA non-coding downstream 330828 11249199 ~ 11250006 (-)
G35499 NA non-coding downstream 359943 11219968 ~ 11220891 (-)
G35501 fam76b,LOC107680374,LOC107592275,LOC107687655,LOC107597227 non-coding downstream 367097 11212039 ~ 11213737 (-)
G35592 LOC107741189,LOC107680392,LOC107565414,LOC107733362,LOC107597318 non-coding upstream 88144 11670957 ~ 11674817 (-)
G35594 NA non-coding upstream 109737 11692550 ~ 11694947 (-)
G35597 NA non-coding upstream 113378 11696191 ~ 11697674 (-)
G35599 NA non-coding upstream 115135 11697948 ~ 11699666 (-)
G35601 NA non-coding upstream 118420 11701233 ~ 11703708 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other downstream 113712 11419955 ~ 11467122 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 611716 10960311 ~ 10969118 (-)
G35384 NA other downstream 654671 10923927 ~ 10926163 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other downstream 706770 10868364 ~ 10874064 (-)
G35122 NA other downstream 1119125 10461208 ~ 10461709 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 967 11583780 ~ 11652627 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other upstream 212843 11795656 ~ 11815944 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 582590 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 734990 12317803 ~ 12319685 (-)
G35936 NA other upstream 919101 12501914 ~ 12505958 (-)

Expression


Co-expression Network