LOC122344700 (LOC108429729,LOC107563441)


Basic Information

Item Value
gene id LOC122344700
gene name LOC108429729,LOC107563441
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30921178 ~ 30925197 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250920.1
GAAACATCACTgcagtggCAGAGAGCCGGTTGAGGAGGCCTGGAACTGTGGGAACGTGTTCTGCGCCAGCTGCTGTGATCAGAAGGTGTCGGGTCAGCAGCTCCGTGAGGCCGGTCACGTGTGTCAGGCGTGTTACGGTCACCTGCGTCCCTCCGCCGTCCCTCCAGCGCTGCCCCCTGCTGACCTGGAGCTGGAGAAACCCATCACCGCCAGCTCCAACTGAGCTTCAGAGCACGCTCAGAAGTGCACTTCCTGAAAACATCTCTAATGTTCTCTTAAGGCGAGACACTGCTTCCTCACGCAGCTGATCGACCGCAGACACGTAATGCAAGGTTAGCTTTAAATATGcaaagaatgcatttttaatagttttcaaaatgtgtttttgacgCGTGTGATCCTGGAGCACAGAGGATCCTCAGCAGCGCAGAAATGATCAAATTTTATCTtacgccaaaaatcattaggatgttaagATCATATTACTCATATTtggtaaatttcctaccataagtatatcaaaacttcatttctgattagtaatatgcactgCTAAGTACTTGATTTGAACAGCTTTAAAgctgattttctcaatatttagttttttttgcttcctCAGATTCCAGACAGTTGTATCTCAGGCAGAGATCGTTCGATCACGAAagatcatttattcatctttcacATGATTTCTCTTTCTCGGTCTTTTGTGCTCCTGGGTCACATGTTAGACTCTAAAGTCTTTACTGAGGGAATTGTACTTAGAACAGACAGAAAGCTATATATCTGGACAGTTTTGATGGGAATCAAGCAAATTATAAACGAACAAATTCCTCAGTAAACAGAAACAGTGTCTCGCTTTAAGACGACAACAAACGAGCGTCTTCCTTCCCAAAGATTCAGATTCACCTCAAGATTTAAGTTAAAGTATTTAAGACAAATTCCGAGACGAATATATGATGAAATTATTGTACTAAAGCCGAGAAAATAAGGTTTGTAGATATTAAGGAGTCAAGTTATGTTTACATGCGGCTTCTCTGAGAAATATTGCTCTAGCCAGTCGTTCTAATCTTCACCTTTAAGACGTCTCCTGGGAGTTTTTAGCTTTGGGCGATTCACAGGAATATTCTTCAGAAACGATTAGCGCATTAGTTCAAAAGAATCAATAAAATGGTATGAAAGCCAAGACATGATCCGTGAACATAGTAATACGTTTCTTAAGATCAGTTCCAGGAGGTTGGTAAGATTCACGGACATCTCCTGACTCTGTCTTCATTTCGTGAGTTCTAGTGATTCATGGAAATATTCTTGAGaacatatttcttaaaataaattgcaaagtTTTAACAGTTCACAAAAatcttttgaacatttaatttgattccCGTGAATGTTCTTAGAAAAGACGCTTCTTAAGATTTTTGTAAATTCCAAACTTTATGGAATAGAAGTCGTTTCTTTCATAGGATTCACTTAAATTCAGTTCTGAGGATGTGTCATATTTACTGAATACTGCAGAAAACGCTCAAATCAAaactttattcattatataaggGTCTGTGTTTGACCAGTTTATGACCAACTGTTACTAAATTTCAATAAATCTTTTAAGGaaatatttagtgctgtcaaactatgattaattacatgcaaaataagctcttgtttacatgtgtgtgtgtgtgtttttatatatatatatatacacacacaaacatgcatgtatatatttatatattaaatatgatagaaatagaaatattctgtatatatatacagacgtatgctccacacacacacacttatataacGTAAACAAAAGCTTTGGTTTTGGATGCGATcgatcatttgacagcactaatttaaaaaaatcataagaaACATCTACAAGAACAGAAAATACTCTCGGCTTTCAACACGAGGAGAAAGCACCGGGAATGTTTTTATGTGCGAGTCGGTCCCCGAGCCGCTCTTTTGATCAGTTTCCTGCGGTCATGCTGCAAAAAGACTGAACGGCTCCGAGAGGAAGTGGAGGACGACGGAGCTCAGCGAGAACTTCCTGTAGGACACCTCTCTTAGGATCTGCTTCTCCGGAGCCGTGCACTCGAATCTGTGTCCAGACGGACTGAACGATGAATCCAGCAATACTCCACGGGATCAGAGGAAACCTCCCACAATCCTCTCTGTGTCAGAGCCGCCgcgcttgtgtgaatgacattAAAGCACAACTCACTGCCAA

Function

NR:

description
PREDICTED: myotubularin-related protein 3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250920.1 True 2239 lncRNA 0.40 3 30921178 30925197

Neighbor

gene id symbol gene type direction distance location
rabepk rabepk,LOC107743065,LOC107579283 coding downstream 85444 30831189 ~ 30835734 (-)
LOC122344907 NA coding downstream 151271 30765631 ~ 30769907 (-)
golga2 golga2,LOC107658391 coding downstream 166238 30734104 ~ 30754940 (-)
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding downstream 249082 30660119 ~ 30672096 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding downstream 265221 30653163 ~ 30655957 (-)
cux2a NA coding upstream 17317 30942514 ~ 30951488 (-)
mcc mcc,LOC106565572 coding upstream 53396 30978593 ~ 31052589 (-)
rcl1 rcl1,LOC107701854,LOC107655287 coding upstream 128727 31053924 ~ 31064355 (-)
LOC122344691 NA coding upstream 148846 31074043 ~ 31081265 (-)
rplp0 rplp0,LOC107654305 coding upstream 183526 31108723 ~ 31112733 (-)
G40762 NA non-coding downstream 1578 30866243 ~ 30919600 (-)
G40751 hspa5,LOC107687227,LOC107567952 non-coding downstream 74300 30821125 ~ 30846878 (-)
G40739 NA non-coding downstream 149154 30770714 ~ 30772024 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding downstream 195952 30720192 ~ 30725226 (-)
LOC122345983 NA non-coding downstream 210500 30708773 ~ 30710678 (-)
LOC122344701 NA non-coding upstream 34247 30959444 ~ 30963507 (-)
LOC122344702 NA non-coding upstream 49121 30974318 ~ 30974883 (-)
G40782 NA non-coding upstream 52412 30977609 ~ 30978322 (-)
G40794 NA non-coding upstream 113208 31038405 ~ 31039457 (-)
G40798 NA non-coding upstream 162995 31088192 ~ 31094923 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 94820 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 128459 30789633 ~ 30792719 (-)
G40711 NA other downstream 187818 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 308037 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 827602 30087966 ~ 30093576 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 406152 31331349 ~ 31350449 (-)
apooa apoo other upstream 777256 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 796073 31721270 ~ 31722906 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 1188699 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 1288834 32214031 ~ 32293782 (-)

Expression


Co-expression Network