LOC122345380


Basic Information

Item Value
gene id LOC122345380
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12602216 ~ 12606938 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250996.1
TGAAAAGAGTGACTAGCAAAGACTTTTGTTCTGGATTGCACCAAAGGCCATAAcacaggtttaaaatgacatgaggaagcaaagggGGAAAAGCCCAGCAGTGCTTGAAGGCTACATGTGGCTTGTGGGTTTGCGTACGTGCACACAAAAAGCCGTCTGTCAGCGTCAGTGAGAAACCATtctgaatatgaataaaaaatgaggCGAGAGCgcaagagaaaaagagactGCGAAAGAGGGCGAGAACAAGACAAAGAGCTGGTGAGTCTTGAGAGAGTGGGCGGAAGATAAATTGCAGAAGTAGAGTGAACTACGAAAAGAACGGGAGAACATGCGCTGGACGGGAGGGGCTGAGCATGGAGAAAGGTGCCTGCATGAGAAAGAAATGACTGCGGGTTCCTTTGAGAAATGTGGCAGAAAGACTTCTTGTTGCTAAGATGCTACATACACACAAAGAATTCTGCTGTggaaatgtattaatacattaGCCGTGGGTGAGGCAAACCTCAGATGTCTAATGAAGTTCACACATCCCCTCCTTCAATATTATTAGCATGCTTCTCCCATGATGGTTCAAAAGACCCACTGCAGCTCTAGCTGTTTACTTGGATATGGGTTCaaagcataaaacatttaataatcaattttgtttttaaaaaatttttaaatattcacatacGCATTGAATCTTTTAGCGGCTAATTTTATCCAAGgtgactttaaaaacaaaatacagatttcaaaataatacaaagcTAGAGCAGAATACTAGGTGTTTTCTTGATTATAATACTGGTCATCATAAATAACGATAGTAATTATCTTTATACATACCTATATCTAATTGTCGGGGGGTGTGCGAACTGGCAGTATTATAAGCAATATAGATAgcaatatttcactgtaaagaAATATCGCATTATAGGTTTATTCGCTTTAAACAAGGCCCCTGTgatatcaaaatgtttaataacatagaaattaaaaacaaaaatttgcaAGCAGTAtcaaaatcataataatgataaaaaaccTCAAGGTCACTAAAGACCAGTAAATACAGGCTATATTGTTCGCTGGTGTGGATGCTAATatctttatagtttttatagttatgaaaaaagaactaattaagaaaagaaattaagaaacTAATTACAAGCAacgggacaaaaaaaaaattacagaacaaataaaacattctaaGATCAGATCTGCATGACGCAAAAGGAAGCCATTTTGAACGATTACAAGGTCTCTATCCTGAGCTGTGTTTATGTAGCAGGTTTACTCAACAGGGGTGAAATGCTAAGATTCCTTTGTTGACAGAATAATTGtacattaaaattgtttatactCATTATGCTACTAAAAGCAAGACTCCCCGCCTGACATGCAGGAATAGCTGATGACATTCCTAATGTGCCTGACAGCATTGTTTAAGCTCTTCTCTTTGGCAGGAGCAAAGCGCTTGATGATTTGTCCAAAGTAAATGCATTCTAGAGCGATATGAGAAATACCTCATACAAGTGTAAGCTAAGACTGACTCATTAGACCACAGACACACTGCCATCACAgaggtttacatttttgtaatctcAGTGGAATAAATCTAGAATCCTGTTTATACTACACTGTGTTAAAGCTGTTAAAGGGAAAGCTACTGACTGGTATTTGTATATGGAGACTTAGGATGAAACAATTCCTGACTGCACGATAACTATTATTTACTTTCAATCTTAACGTAATGTAGATGTATGAAGGACTGTTGATGGCACCTGAACATGAGCTGGTCAAATGTCAgtgagtttaaataatttaataaaatactaatttaatttaaagtaatcCACAAAATATGAAGGAGCATCTGTTTTGAATTCACTTCAGCTTTGCCATTGcaggaatacatttttcaatatattttaataaaaacacttttaaattgtaacaatattcaACATTATGAAATTTTGGACTATGTTTTTGAtcaataaattcagccttggtgagGGCAATAGACTtaacacataaaacattttactaacTCCATACAAGATAAGATCCCTGAATTTGCAAAGacaaaagtctcaaaaccaaattGATATTCTTCATAAAGGTTATGACTGTGGCTGTGCACAGAAACTATAAAGTGGGGCAATGCTAACTCTGCAAGAACAGTCTGCTGTTTCTGactcaaatattaaataatttaccaaataataaaaatgcaaatatagcTTGAGGTTGAATATCAATTACAAACAAAATTTACAatcaatttctttaaattatgcTTCCTTAAATTGAAATGGCAAATCTGTAAAGTGTTTACCAActcaattcaaattcaagaATATTGGAATGAATTGAAATTTTCTCAATTCTAAACGGCAAACAAACctgttgtttgcattttttgggACAGCTGTGTCTCCACCGCAggctaaatgacaaaaaaggaaACTTAAAGACTTGTTAAAGTTTATCGATGACTTGTAAGGTGAGGATTCACAGCAAAATAGTCTGAGCTATCTTACTACAGCCACCACCTTCagcaaacactaaaaaaaatcacataaatcACAGATCTTCAGGAAAGCTAAGATAAAAGGCAAGCTCTTGTTGACGGTATATAACAACAAAAGCGAATCTGTAGTGTTCAGGAGCAGAATTCATGTTAGGTCAGCAAAACAATTCAAAGCGTTCTTGCTTACGTATTcaaattactgtaatatttacaaattgcaaaaatgcaaaaccaGTGTATGTTTTCCCAACTCCCTCATAAAGTGTTTTGTGCTGTCCACATTAACAGCTCTCTTACCCTCAGTGTAATTTACATTCAGTTAACAGTGttgattattttcagtgttcCTGGTTGTTATGGTTTGGATTTGATTCTGCTCCATTAGCAGGTGATTACCAGGTGAGtgcattaataaaacagacaCAGCATACGGAAAAAGATAGAGCGAAAAACAGCAGCAGTCTGTTTATCTTTCCTGCTCAGTCCCACCGATCATCTCCCTCGGAGTGCATTAATTACTCCAGAATAGGAATTAATTTTAAGGAATTAAGCATAATGCGGCTTAATTCCACTGATCGTGAGAGCCGTGTGTGCATCACAGCACAAGCGGCTCTTACCATCCTTCCCGTCTCGTTTATTTCCTTCTATTCCCTCCATAGCATACTATTGTTACACGTAATGTATTCCATTTCATTCCATTATGCAGAGTGCCATTCCTAGCCGTTTActtccattcattttcattctgttCTATTCCATTCCATCGACGAAAGCTGATATCTCATTGCTGCCATTGTGGTTGGTAACTGCATCCAACATCCTGATTGGATTGAAGGTGGGAGTGAACATTGGCAGGACCCCAAGGTCTGGTGGCCCTGTGTTCGGCCACCCTCTCAGGTTCACGCACACCCACAAAGGCCGTCCTTTAAGGCAGACGGAAGAGTTCACCGTCGAACAAGCACAGGTCTGCCATTCCCAGGGCATCTTTCTCAGGGTCCTCTGTGTCTCTCGCACACAATCAGTTCTTCATTATCCCGGGTCAGATTCAGTAAATGGTCTACCTTCAATAAAGAGACTGAAATAGTGTGTGAGACGGCTGCTGTGACGGCTGCTGTGATGATATCTGATGAAATGAGGTTATAACTAACTGAATAAGTGAATGAATcaacagattttatttaatcatattcaTAATTTCACAGAGACACTGTCTTGCTCTTGCGGTAGATAAAGACAGACTCCGGAGTCATGCATGcagaaaatgaagttaaaatTGAAAGAAATTCAGTCACTAGTGTCTCACACCAAACAGAAATTCTAcagttttttatgttgtttcatACTGGATGTCTTCTTGGACAAGAGCTCTTCTGCTTTCCTCGACGGTCCTCCAAACCCTTGCTGGAAAATTGACACTTTCTCCTCCATTTGCTAAACCACATGGACCACTGCAGATCATTACCAAGTGTTCAAAGCCCCTTGAGACACAAGAAGACTGGAAGCTGTCTACACTAGTCAGGTTTCCATCATGAAAAGAAGACCAAAAGCCTGACCTTGAAAAATGGCCACGACACCATTAGCACACCATTATAAATCTCTAACTGTCAGCAGCCAGCCTCTTTATCTTGGTTATGTGCGATAAAGTCAAAAAAGTCTATAATTAGCCTGGCCAAGGTCCCATTAATTCCACTTTAAACTTCATGAACCACAAAACATGGAATGTTTTGTCTTCTGTAATTGactatattaactatatatacacaccactgcctttaaatgaaattactGAAAATAATCTTTCTCTTAGACATTCACAGGGTCTCATTTTGGACTATATGAAGAATTCTAGTAGTCAGTAGTCCAGTATTCAGACATTCAACAGACATTAATAATGATgttaacacaaaaagaaaatgtgtaaatgagATTGGGTACATTGCTTAATGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250996.1 True 4480 lncRNA 0.37 4 12602216 12606938

Neighbor

gene id symbol gene type direction distance location
limk2 limk2,LOC107743341,LOC107654635,LOC107696070,LOC107741211 coding downstream 41537 12540284 ~ 12560679 (-)
si:dkey-174n20.1 si:dkey-174n20.1,LOC107696056,LOC107741298,LOC108255501,LOC108444311,LOC105893868 coding downstream 88251 12510566 ~ 12513965 (-)
hs3st1l2 hs3st1l2,LOC107557106,LOC107741295,LOC107743333,LOC107654638,LOC107663220,LOC107578102 coding downstream 173834 12412341 ~ 12428382 (-)
cds2 cds2,LOC107597267,LOC107654641,LOC107741205,LOC107663217 coding downstream 192548 12396282 ~ 12409668 (-)
arhgap25 LOC107741203,LOC107557123,LOC107663229,LOC107654642,LOC107743332,LOC107597266 coding downstream 208174 12381364 ~ 12394042 (-)
LOC122345379 NA coding upstream 33439 12640377 ~ 12642522 (-)
cmklr1 LOC107743349,LOC107597353,LOC107654611,LOC107741300,LOC107696054,LOC107595970 coding upstream 35718 12642656 ~ 12644497 (-)
LOC122345863 NA coding upstream 62012 12668950 ~ 12673658 (-)
sart3 sart3,LOC107654630,LOC107597276,LOC107741219,LOC107595944 coding upstream 78120 12685058 ~ 12701945 (-)
tmem119a tmem119,tmem119a,LOC107597281,LOC107727157,LOC107741302,LOC107696065 coding upstream 101450 12708388 ~ 12712054 (-)
G35949 NA non-coding downstream 64414 12532390 ~ 12537802 (-)
G35928 NA non-coding downstream 86666 12463906 ~ 12515550 (-)
G35923 NA non-coding downstream 151451 12448214 ~ 12450765 (-)
G35922 LOC107696053,LOC107654639,LOC107743336,LOC107595973 non-coding downstream 156996 12443787 ~ 12445220 (-)
G35812 arhgap25,LOC107597266,LOC107743332,LOC107654642 non-coding downstream 345404 12255480 ~ 12256812 (-)
G35966 wscd2,LOC107597274,LOC107743343,LOC107696066,LOC107595945 non-coding upstream 30252 12637190 ~ 12639377 (-)
LOC122345905 NA non-coding upstream 273123 12880061 ~ 12884157 (-)
G36004 fbp1b,LOC107718665,LOC107655925,LOC107596168,LOC107757529,LOC107596723 non-coding upstream 306688 12913626 ~ 12916814 (-)
G36009 NA non-coding upstream 317805 12924743 ~ 12926462 (-)
G36012 NA non-coding upstream 326533 12933471 ~ 12933779 (-)
G35936 NA other downstream 96258 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 282531 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 432806 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 786272 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 949589 11583780 ~ 11652627 (-)
G36047 NA other upstream 446906 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 972123 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 1047356 13654294 ~ 13699226 (-)
G36298 NA other upstream 1110186 13717124 ~ 13718543 (-)
G36336 NA other upstream 1210804 13817742 ~ 13818942 (-)

Expression


Co-expression Network