LOC122345617


Basic Information

Item Value
gene id LOC122345617
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7495614 ~ 7498788 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251016.1
GCACAAATCAAGCTCTTGCGCACACAGGTGTGCTTGACTTGTTGCATGGGACTTGCTATGAGGACAAGTTGAAGGAAACGGAAGAGAAAGGTTATTATAAGAAATACTGGATTCTTTCTGCATCGAAGTCCTGCAACTCTATTTTACCAGTATGTGGCGACAAGTGAATCATTCACTCCACCGATTGTAATCACAGGGAGTCACAGAACAATGGAACAAAGTAAAGCTGAAGCCAGACAGAACTAATCATTGAGACTATGGGGGGAAATAATTGagattatttcaaagaaaacctCCACACCTTCCAGAATATGGAGTCAAACTCGGCTCCATGGAATCTGTCAGGCATACCAGCTGAAGACAGTTTTGGTCCGAGAAGTGCTACGAACTCTTCAAAGTCAACCTGACCGTCTCCTGCGAAATGAAAGGTACACAAACACAGGCCAGCTTCACTGCAACCTTTTCTTGAAGGAGATTGTGATCTTACGCTGATCCAGCAGAACAGCCAGACTCTAATCTTTTGAATCGTTATCAGACACATCAGTCCTTTGTTTAGTGATTCACAATAACCATTACAATATTGAACTGTTTTGCTGTTGCAGGTGTTTTGTATCGAATTTGCAATTCCACCATGCCTATCTGTCAAATGTCCCCTTAGCAAGgcttaaatgtaatcaaatcaaGACAAATTATTAgtgatgcatagaatgtaatgCAATTTAACAACAGCTAAAATACGCAGAGCATGCGTGTCCGAAGATATAAATGTTTCGGTAGTTTTTGCAAGGGCTGATATACCGTCCATGTCCAGCCTCTGAATGATCACCTCCAGCTCCACTTCATTTGGCATGTAACCAAGAGACCGCATGGCCACTCCTAGCTCCTGTTTTGAGATGAACCCGTTCCCGTCACGGTCAAACACCTTAAAGGCTTCACGGATCTCTGCAGATGTGCCAGACACATTGCCATGTTACAACATGCAATGacatgagacttttttttttctttaaatgttgaaCATTGTCTGTTTCAGTGTGCTTGATTGGAGAGTTGAACCGCTTTTCCCAATTAATCAGTGATTACTTATCCAGTGAGTAAAATCAGGATAAGTGCTATGACTGATTGTCCTTTAAATGTCAGGAGACAATCAAATACAACTTTATTAATAACTgtcattaaaagtaataaatgtcACAATGAAGCATGatgttattctaaaaatatttagattttccaAGCCATATTTTCATTTGCCgtgacattattttatatataatgcagaaTTGCATGTGATCAATTGTGAAAGTTTGTTAActttaacatattaaatatatatatatatatatatatatatatatatatatatatatatatatatatagtcttttaTGGTATAAATTGTCATGCGGCCTATGGACAGTAGCCTAATTGTACACCTAAAGGAGGTAtggtatctgtttttttttttttttttttttttttcagatttgtcTCTttgtatataagaaaaatatgaaaatccaCATCATTGAGTAATTAAGAGGTAGGCCTCTATCCTCTAGAACTGAAGGTGTATCACATGCATAGAAATGGCTGAGTACAAAAAAGTATGCGTAaaatcaaaaaagtaaataactaaattatgtcatttaatatatgcaattccccaatgtttgttttcttcaagaCACTTGAATGAATATAATTTCTATATGGTGCaacctttttaaatatgttatttaaatgtgtttttgtcaaaGGATTTAGtgctatttattacatttaatacaaatattaaatactagATAGCCTACATTCGCGTGTGTTATCAGATACGAACGCCCACCTTCAGGCTTCATATTGTAAGCTTGATCTCCACTATAGATTCAACTTGATGGCGTTTGTTCATACGCCTATCTCCgatccaaaaataaaacctaaattaaaacgtg

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251016.1 True 1952 lncRNA 0.36 3 7495614 7498788

Neighbor

gene id symbol gene type direction distance location
tescb tescb,LOC107598325,LOC107660769,LOC107723336,LOC107681843,LOC107740949,LOC107587384,LOC108441567 coding downstream 15810 7475268 ~ 7479804 (-)
taok3b LOC107723325,LOC107740964,LOC107598017,LOC107587450,LOC107681865,LOC108270643 coding downstream 26457 7461261 ~ 7469157 (-)
myhz2 myhz2,ns:zf-e68,myhc4,myhz1.1,myhz1.2,LOC107723326 coding downstream 46156 7438835 ~ 7449458 (-)
LOC122345653 myhz2,ns:zf-e68,myhz1.1,myhc4,myhz1.2 coding downstream 66148 7419287 ~ 7429466 (-)
c9 c9,LOC107691041 coding downstream 151477 7340212 ~ 7344137 (-)
zmat5 zmat5,LOC107723367,LOC107681867,LOC107598336,LOC107587391,LOC107740948,LOC107660772 coding upstream 2847 7501635 ~ 7504656 (-)
scai scai,LOC107740943,LOC107723359,LOC107681852 coding upstream 13529 7512317 ~ 7536783 (-)
ppp6c ppp6c,Ppp6c,LOC106570422,LOC107587376,LOC102313764,LOC102783418,LOC100701794,LOC107681855 coding upstream 38559 7537347 ~ 7540940 (-)
myo1hb myo1hb,LOC107681857,LOC107723363,LOC107740942,LOC107660767,LOC107587362 coding upstream 42454 7541242 ~ 7557708 (-)
ungb ungb,LOC107681856 coding upstream 59491 7558279 ~ 7561111 (-)
LOC122345654 NA non-coding downstream 35503 7450377 ~ 7460111 (-)
G33990 NA non-coding downstream 100382 7366250 ~ 7395232 (-)
G33985 LOC107691047,LOC107597997,LOC107723329,LOC107740940,LOC107693835,LOC107587379 non-coding downstream 159069 7334414 ~ 7336545 (-)
G33947 NA non-coding downstream 301401 7193976 ~ 7194213 (-)
G33816 NA non-coding downstream 444290 7050977 ~ 7051324 (-)
G34025 LOC107587446,LOC107597252,LOC107723353 non-coding upstream 73372 7572160 ~ 7578212 (-)
G34214 NA non-coding upstream 144182 7642970 ~ 7644229 (-)
G34248 NA non-coding upstream 213255 7712043 ~ 7712494 (-)
G34231 NA non-coding upstream 218785 7717573 ~ 7760165 (-)
G34260 NA non-coding upstream 362687 7861475 ~ 7861829 (-)
G33998 LOC108444092 other downstream 98461 7382346 ~ 7397153 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 552411 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 669432 6824171 ~ 6826182 (-)
G33175 NA other downstream 2872556 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 3302533 4144856 ~ 4193081 (-)
LOC122345606 LOC107712378 other upstream 208182 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 219777 7718565 ~ 7721758 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 662089 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 913094 8411882 ~ 8414806 (-)
timm8b timm8b,LOC107717885,LOC107598437 other upstream 930912 8429700 ~ 8431586 (-)

Expression


Co-expression Network