LOC122345708


Basic Information

Item Value
gene id LOC122345708
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31456500 ~ 31498094 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251024.1
TAAGACTCTCTCTCACTAACTCTCATTTCAATAATATCGATACGACTGCCAAAATGTTATAAAAGCAACACGGGGCGCAATTATCTATTATAGTAAAGACAGAGATAGATCGCTGTGAATTGGCCAAAGGAGAACATAAAAAGAAGATTGAAAAGTGCTAGATCTGATTAAACTCTAACCCTTATGGATTAACAACTGGCACGTGCACGATTCTTTATGGAAACAGATGCACGAAGGAGCTTATAGAAACCAATTTTCctggttttaaaaaatggttGAAGATATCCAATGCTGTTCAAAGTGTTTTACTCGCACAAGAGACAGATCTAGACTgtattttggcataaaagtTACTGCCATATAGCTAGAAAAAAATTAGCCTAAACATAGCAGCTTCACGTTTAGTGTTTATGTTCCATTGATATAGAAATGCTAAATGTAAGCCTTTTTTAACGTTAACCACAAATACATCAGATAGCCTACTGTACATCCCCAAACATTTGCATTACACAGAAACCGCGTAGTTTACACGTATTTTTCCGATCGCGCGCCAGCTACGATCCTATTGGACGACACGTTTTGCTTCCGCGCTTTGATTGGTCCTTCACATTTTGAAATTAGAGCCGTGGGTTTGAGATTTGTAAGAAATATAAAAGTCCGTATTCTCGCTGTCGGTCGCGTCATTGGTTCGTCCCCCGTCACTGAAGTCGTTTTGAACTCTGAACTCGACGGTCAGGTGGCATCCGTTGTGTTTTAAGTGGCGTTTTCCGAAGCCTTCATGAACACGACAGGATACGcttcGTTCACGGTGACATCAACATGCAACATATCTGTGACTGAGAAAAGGACCAATCAGCTGCAAGCTTGATTCTTGACTTCAGGTGACGGCCACGTCTTCGTAGTGGTAGCAGTTATGGACGCCCCATCCCTGATTCCCGCACTGGCTCAGGTCCGTCTCTTCTCCTCTACAGTCCACGTTGTCCAGCAGGATGGGCCCGGAGCCCTGGCCGAACTTGGAGCTAGTCCCCACGGCCACGGCCACCCCGCAGTCCAGCTGCCGGCAAACCACAAGTCCGCTGCGCTTTACGTTCAGATGGCTCGCAGCTCGCAGGACGACTCTCCAGCTCTCGGAGGTAAACCTTGGCCGGGAAAAGAGAAAACCCGTAGTGTGTCCGGCTGAAGAGCCACGAGGTCTTTCATCTCACTAACCTTGTGAGTCTATAAGTACCTGGCCGCTCCGGTACGTATTacgtaaaaaaagaaaggacaaGACAACAGCATTGTATGTTAATGCGCTGACACCTAGTCCTGCCCGGTTCATGTGAAtgaagagagaaagggaggagGAAAGAAGACGGCACTGAAAGCCGGCCCTTCACAGCTATCCCAGCATCTCTGGTTTCAGCTCGCTCTCACCCGAAGCGCTCTGCAGGTGTGTGCTTTCGCGTAATTACAGCCTAGCGTTCGCGTTTTGGCTCTTCTTTATCAGGCTTTAAGGCCGTCAGGCTCGTCCTGCTCGTCTGCCGGATCAATAGCGACCGGCCGCAGCCACAATATCAGCTCAATGGCTTTCATGGCGCTAGAGTTTGGACATCTTCCATAATCATTAGCTcccatgtgtgtttgtgaagcgTTTTACCCCGACCAGCCTTTGACCCGTTCAATCTATACACCACACGGCCTTAATGGAGCAAATGC
>XR_006251025.1
TAAGACTCTCTCTCACTAACTCTCATTTCAATAATATCGATACGACTGCCAAAATGTTATAAAAGCAACACGGGGCGCAATTATCTATTATAGTAAAGACAGAGATAGATCGCTGTGAATTGGCCAAAGGAGAACATAAAAAGAAGATTGAAAAGTGCTAGATCTGATTAAACTCTAACCCTTATGGATTAACAACTGGCACGTGCACGATTCTTTATGGAAACAGATGCACGAAGGAGCTTATAGAAACCAATTTTCctggttttaaaaaatggttGAAGATATCCAATGCTGTTCAAAGTGTTTTACTCGCACAAGAGACAGATCTAGACTgtattttggcataaaagtTACTGCCATATAGCTAGAAAAAAATTAGCCTAAACATAGCAGCTTCACGTTTAGTGTTTATGTTCCATTGATATAGAAATGCTAAATGTAAGCCTTTTTTAACGTTAACCACAAATACATCAGATAGCCTACTGTACATCCCCAAACATTTGCATTACACAGAAACCGCGTAGTTTACACGTATTTTTCCGATCGCGCGCCAGCTACGATCCTATTGGACGACACGTTTTGCTTCCGCGCTTTGATTGGTCCTTCACATTTTGAAATTAGAGCCGTGGGTTTGAGATTTGTAAGAAATATAAAAGTCCGTATTCTCGCTGTCGGTCGCGTCATTGGTTCGTCCCCCGTCACTGAAGTCGTTTTGAACTCTGAACTCGACGGTCAGGTGGCATCCGTTGTGTTTTAAGTGGCGTTTTCCGAAGCCTTCATGAACACGACAGGATACGcttcGTTCACGGTGACATCAACATGCAACATATCTGTGACTGAGAAAAGGACCAATCAGCTGCAAGCTTGATTCTTGACTTCAGGTGACGGCCACGTCTTCGTAGTGGTAGCAGTTATGGACGCCCCATCCCTGATTCCCGCACTGGCTCAGGTCCGTCTCTTCTCCTCTACAGTCCACGTTGTCCAGCAGGATGGGCCCGGAGCCCTGGCCGAACTTGGAGCTAGTCCCCACGGCCACGGCCACCCCGCAGTCCAGCTGCCGGCAAACCACAAGTCCGCTGCGCTTTACGTTCAGATGGCTCGCAGCTCGCAGGACGACTCTCCAGCTCTCGGAGGTAAACCTTGGCCGGGAAAAGAGAAAACCCGTAGTGTGTCCGGCTGAAGAGCCACGAGGTCTTTCATCTCACTAACCTTGTGAGTCTATAAGTACCTGGCCGCTCCGGTACGTATTacgtaaaaaaagaaaggacaaGACAACAGCATTGTATGTTAATGCGCTGACACCTAGTCCTGCCCGGTTCATGTGAAtgaagagagaaagggaggagGAAAGAAGACGGCACTGAAAGCCGGCCCTTCACAGCTATCCCAGCATCTCTGGTTTCAGCTCGCTCTCACCCGAAGCGCTCTGCAGGCCGAGTCAAAACACAGCTGAGACTCTTTGATGGGGATCATCCGCCGTCTTTGTAGCGAGTCGGTCGAGGTCGCCGCTGAAGAAAAGAGAGCCACGGAACGGACAATGAGAGATTAACATCTGTGCACAGCTGCGGTCGGCGACCGGTGCGTCCCCGTGACCCCGTGACCCCGCAGACTGTCTTACAGGAAGCTGAAGTGTCTCTGCTGGACCTTCACCAGAGGCTCCGGCTGCCGGAAAGTAGGTtacacaaaaagaagaaaacaaaaggaagGAGGAAGCAGACACAGCTGATTCACGAATCACAAAGTGCACCTGTGATCTTGAGGATCCTGAGCAGATGCTTGTGGTTCACACAAAGAAAAGAAGGGACTCGAGTGTCCTGGAGGATCACAGCCCGAAGCTGCGAGGTTTTGTTGGACTCCGGGAATGAACCGAAGACGTCTCTGCTCCAGGTCGCCATCCAGGATCATGTTGTAGCTTCTGGGCTTTATGAATCAAAAGTGAAGTATCGAAACAACGCAAACAGAAGTGTTTGCGAGATAGTAAAGTGTCAGGTATTTTTCTTGTGAAGCTGATATGATATATAAACTGATATATTGATCCCTAAAAGAACAAATagacagcaaaaataaaaagaataatagcAGGTTCCTTTCTTAACCTAAAAACCATCAAAGAATCGACTtctggtttttatttaaaaggggtTTGGGACAAAGTGGGCTTTTTTTTGTGATCTTgctcatattaaaaataatctaatacTAAAAGAGGTTTAAATGTGGGTGAATCCTTATGTTTTTCCACAGAAGGACAGAGCAGCGTTGAAATTAGACTGAAACCGCTGTCTTAAATTAGAAATGCGTCTTGTTTCCTTTCATCAAAACTGTTGCACAGAACTCATCTGTCCCAGCGCCGGATATTCATAGATATTCAAGATAGtcactttttgcttttaaagaggaaattctGAGgaataaataatgttgaaactacatttttagcttttctcCCTTCTATTAAGACAACTGCATTGAACAAgcgtgtgtgtaaaatgtattataacacTCCAACCAGAGAAGAGCACATTTATTTCCCTTAATTTGGCTTTTCTTTACAGCAGTTTCTAAATTGTCTCTGTTATGTAACGTGTCCTCCTAAAGCAGTACTGTACTGTATACTG
>XR_006251026.1
TAAGACTCTCTCTCACTAACTCTCATTTCAATAATATCGATACGACTGCCAAAATGTTATAAAAGCAACACGGGGCGCAATTATCTATTATAGTAAAGACAGAGATAGATCGCTGTGAATTGGCCAAAGGAGAACATAAAAAGAAGATTGAAAAGTGCTAGATCTGATTAAACTCTAACCCTTATGGATTAACAACTGGCACGTGCACGATTCTTTATGGAAACAGATGCACGAAGGAGCTTATAGAAACCAATTTTCctggttttaaaaaatggttGAAGATATCCAATGCTGTTCAAAGTGTTTTACTCGCACAAGAGACAGATCTAGACTgtattttggcataaaagtTACTGCCATATAGCTAGAAAAAAATTAGCCTAAACATAGCAGCTTCACGTTTAGTGTTTATGTTCCATTGATATAGAAATGCTAAATGTAAGCCTTTTTTAACGTTAACCACAAATACATCAGATAGCCTACTGTACATCCCCAAACATTTGCATTACACAGAAACCGCGTAGTTTACACGTATTTTTCCGATCGCGCGCCAGCTACGATCCTATTGGACGACACGTTTTGCTTCCGCGCTTTGATTGGTCCTTCACATTTTGAAATTAGAGCCGTGGGTTTGAGATTTGTAAGAAATATAAAAGTCCGTATTCTCGCTGTCGGTCGCGTCATTGGTTCGTCCCCCGTCACTGAAGTCGTTTTGAACTCTGAACTCGACGGTCAGGTGGCATCCGTTGTGTTTTAAGTGGCGTTTTCCGAAGCCTTCATGAACACGACAGGATACGcttcGTTCACGGTGACATCAACATGCAACATATCTGTGACTGAGAAAAGGACCAATCAGCTGCAAGCTTGATTCTTGACTTCAGATGACCCCGGCGTCCTCGTAATGGCCGCAGTTATGCTGACCCCAGCCCAGGTTGAAGCAGTCGGACAGCTTTTGCTCGCTGCCGCTGCAGTCCACGTTGTCCAGCAGTATGGGGCCGGAGCCGTAGCCGAAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251024.1 False 1698 lncRNA 0.47 4 31461934 31498094
XR_006251025.1 True 2618 lncRNA 0.45 7 31456500 31498094
XR_006251026.1 False 1016 lncRNA 0.43 3 31477391 31498094

Neighbor

gene id symbol gene type direction distance location
LOC122345520 LOC107663881,LOC107725093,LOC107654310,LOC107734346,LOC107563427 coding downstream 1992 31369810 ~ 31454508 (-)
ca4a LOC107663683,LOC107654307,LOC107734368,LOC107719346 coding downstream 259533 31191163 ~ 31196967 (-)
gusb gusb,LOC107719352,LOC107701859,LOC107654306,LOC107734369,LOC104964597,LOC107591494 coding downstream 301387 31142577 ~ 31155113 (-)
rplp0 rplp0,LOC107654305 coding downstream 343767 31108723 ~ 31112733 (-)
LOC122344691 NA coding downstream 375235 31074043 ~ 31081265 (-)
hspb1 LOC107591466,LOC107667824,LOC107725127,LOC107562193,LOC107654311,LOC107734358 coding upstream 395 31498489 ~ 31503030 (-)
srrm3 srrm3,LOC107591468,LOC107734356,LOC107562180,LOC107725131,LOC107654313 coding upstream 8385 31506479 ~ 31567684 (-)
LOC122344718 LOC107725156,LOC107654314,LOC107591470,LOC107734345,LOC100535945,LOC107562196 coding upstream 70686 31568780 ~ 31590397 (-)
LOC122344719 c1qbp,LOC107725147,LOC107664384,LOC107654317,LOC107734359 coding upstream 96383 31594477 ~ 31598310 (-)
LOC122344717 LOC107664759,LOC107725124,LOC107654315,LOC107734362,LOC107562201 coding upstream 102131 31600225 ~ 31613830 (-)
G40842 NA non-coding downstream 176069 31280177 ~ 31280431 (-)
G40841 NA non-coding downstream 183499 31272686 ~ 31273001 (-)
LOC122344940 NA non-coding downstream 234243 31220817 ~ 31222257 (-)
G40798 NA non-coding downstream 361577 31088192 ~ 31094923 (-)
G40794 NA non-coding downstream 417043 31038405 ~ 31039457 (-)
G41034 NA non-coding upstream 148764 31646858 ~ 31648612 (-)
G41023 NA non-coding upstream 157489 31655583 ~ 31701818 (-)
G41019 prdx4,LOC107665442,LOC107591478,LOC107734341,LOC107654298 non-coding upstream 185874 31683968 ~ 31684836 (-)
G41018 LOC107734365 non-coding upstream 193772 31691866 ~ 31695788 (-)
G41037 NA non-coding upstream 214257 31712351 ~ 31732259 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other downstream 106051 31331349 ~ 31350449 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 630142 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 663781 30789633 ~ 30792719 (-)
G40711 NA other downstream 723140 30631028 ~ 30733360 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 843359 30590843 ~ 30613141 (-)
apooa apoo other upstream 204359 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 223176 31721270 ~ 31722906 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 615802 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 715937 32214031 ~ 32293782 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other upstream 785443 32283537 ~ 32314631 (-)

Expression


Co-expression Network