LOC122345808


Basic Information

Item Value
gene id LOC122345808
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5142578 ~ 5169249 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251034.1
TCCGCCATTTTGGCGCAATTTCATAGCCGCGCTGAAAAACTTACTTAAAACCGACTTAATACCCCACAGAGAAAATGTTTGGGGTAACGAGGGAACGAAACTGAAGCCATTCGCCGATGATGATTTCGAAAAGGATATTTGAAGCGCAGGAGAGCAGCTTTGATGTACACAATGACTAAAGTTTTGGATGGTGCGCAAAAGACATACCATTACCCCGGTAATAGCAGCAGCACAAGGTACAAAAAGGAAAGATGGAACTGACATTATGCTGCTGTTTTAGAAGCACGGAGGAAAGGCGGACAGGCTGAGTTGGCACAGGTATGTGGCGTCAGGAGGGGTTTTGTGATGGGGGCTGGAAGAAGAGCGGCAGAAGAACAGCGAAAGCGGCTAAAAGCGTTGTGGCAGCGGAGAGAGAGCCAAATGCATGTTGGGAAGGAGATGGAATCATCTGGAGATGTCAGGCTTGGCTTCCTGCACAGAGGCAGCGTGTATGTCTTTGCCAGACTGGAGAATAAAGTCTTTGATCACTGCGTTGGGCAAAGCTTTACTGCCCCCTCTGCCAATTAGCAGGGCACTGCCCCAACTGCCTCAACTGCCTCATGCCAATCAGCTCTGCCAGTTTGGATGATTACAAGTCGGTGTGCCTCCACCCAGGTCAGAGAGGGCACGGGGACGTCACAGACTGTGgttctgtggaaaaaaataaggaGTGGGTCTCCTTTTTgctctctttgttttattttcagggtCTGTCCCAGCACTGCTGCAGCTTTTGTCAGCCCTCATTCAGGGACCGGCTAGAAAAACATAACCACTATGTTAAGACTGTAGGTCATTCCAATTAGACCAGTGTACTTTTTTATCTGAACTATACTAGTCAGATTGGAATATTGAAGTTTTTGAAGCATCTTAT
>XR_006251035.1
TCCGCCATTTTGGCGCAATTTCATAGCCGCGCTGAAAAACTTACTTAAAACCGACTTAATACCCCACAGAGAAAATGTTTGGGGTAACGAGGGAACGAAACTGAAGCCATTCGCCGATGATGATTTCGAAAAGGATATTTGAAGCGCAGGAGAGCAGCTTTGATGTACACAATGACTAAAGTTTTGGATGGTGCGCAAAAGACATACCATTACCCCGGTAATAGCAGCAGCACAAGGTACAAAAAGGAAAGATGGAACTGACATTATGCTGCTGTTTTAGAAGCACGGAGGAAAGCGTTGTGGCAGCGGAGAGAGAGCCAAATGCATGTTGGGAAGGAGATGGAATCATCTGGAGATGTCAGGCTTGGCTTCCTGCACAGAGGCAGCGTGTATGTCTTTGCCAGACTGGAGAATAAAGTCTTTGATCACTGCGTTGGGCAAAGCTTTACTGCCCCCTCTGCCAATTAGCAGGGCACTGCCCCAACTGCCTCAACTGCCTCATGCCAATCAGCTCTGCCAGTTTGGATGATTACAAGTCGGTGTGCCTCCACCCAGGTCAGAGAGGGCACGGGGACGTCACAGACTGTGgttctgtggaaaaaaataaggaGTGGGTCTCCTTTTTgctctctttgttttattttcagggtCTGTCCCAGCACTGCTGCAGCTTTTGTCAGCCCTCATTCAGGGACCGGCTAGAAAAACATAACCACTATGTTAAGACTGTAGGTCATTCCAATTAGACCAGTGTACTTTTTTATCTGAACTATACTAGTCAGATTGGAATATTGAAGTTTTTGAAGCATCTTAT
>XR_006251036.1
TCCGCCATTTTGGCGCAATTTCATAGCCGCGCTGAAAAACTTACTTAAAACCGACTTAATACCCCACAGAGAAAATGTTTGGGGTAACGAGGGAACGAAACTGAAGCCATTCGCCGATGATGATTTCGAAAAGGATATTTGAAGCGCAGGAGAGCAGCTTTGATGTACACAATGACTAAAGTTTTGGATGGTGCGCAAAAGACATACCATTACCCCGGTAATAGCAGCAGCACAAGGTACAAAAAGGAAAGATGGAACTGACATTATGCTGCTGTTTTAGAAGCACGGAGGAAAGGCGGACAGGCTGAGTTGGCACAGGTATGTGGCGTCAGGAGGGGTTTTGTGATGGGGGCTGGAAGAAGAGCGGCAGAAGAACAGCGAAAGCGGCTAAAAGGCCTCCAGTGCTGCCTTGCGCTTCTTCTGTGTGTCGGTCTCTCCTGGTTTGCCCGTACCTCCCAGGATCGTCTTCAAGCTCTCCGTGGTTCTGCTGTGAAGACTTGCTGGTCTGTGCATGGGATCTTCCCAAAACcagcaatcacacacacacacacatttatcttCGATTAGTGGATCACTTGTTTTTACGTCATGTTCTCTGCACATTTTTTGGGAGGATAATAAGGGCTAGAAATAGTTAGGCGATATTAGTCCTCAGGATtttatggaagcccatttctgtCACATAAACTGTAAAGAAAAGAATATATAGGACATAACCAGATGTTTTTTAGATAACGTATCCGGTTGGGTTACGGTAGGTGTAGGGAGGGTTTATTGTTCCAAAAAGG

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0051704 multi-organism process biological_process
GO:0044703 multi-organism reproductive process biological_process
GO:0007276 gamete generation biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0019953 sexual reproduction biological_process
GO:0032504 multicellular organism reproduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251034.1 True 913 lncRNA 0.48 5 5142578 5169249
XR_006251035.1 False 814 lncRNA 0.46 4 5142578 5169249
XR_006251036.1 False 788 lncRNA 0.46 5 5146350 5169249

Neighbor

gene id symbol gene type direction distance location
rnf215 rnf215,LOC107707831,LOC107656805,LOC107741259,LOC107672611,LOC107548928,LOC107600132 coding downstream 128637 5008086 ~ 5013941 (-)
zdhhc8b zdhhc8b,LOC107600124,LOC107672609,LOC107707819,LOC107741283,LOC107548914 coding downstream 141522 4949084 ~ 5001056 (-)
si:dkey-112e17.1 LOC107656819,LOC107548941,LOC107741260,LOC107672633,LOC107707820,LOC107600127 coding downstream 194625 4927327 ~ 4947953 (-)
galnt9 galnt9,LOC107600134,LOC107702212,LOC107719314,LOC103023100,LOC107570788,LOC108412666 coding downstream 584734 4487841 ~ 4557844 (-)
atad1a atad1a,LOC107702218,LOC107561272,LOC107656802,LOC107719316,LOC103469725 coding downstream 680161 4456819 ~ 4462417 (-)
si:dkey-215k6.1 si:dkey-215k6.1,LOC107684990,LOC107741256,LOC107672621,LOC107707847,LOC107548916,LOC107600130 coding upstream 463 5169712 ~ 5333504 (-)
aacs aacs,LOC107672615,LOC108255473,LOC107684991 coding upstream 182197 5351446 ~ 5380269 (-)
LOC122345752 bri3bp,LOC107684981,LOC107597359,LOC107672602,LOC107595913 coding upstream 214306 5383555 ~ 5388325 (-)
poli poli coding upstream 219570 5388819 ~ 5393629 (-)
ankle2 ankle2,LOC107597302,LOC107684979,LOC107672626,LOC107741250,LOC107595914,LOC107752143 coding upstream 229645 5398894 ~ 5410494 (-)
G33334 NA non-coding downstream 66544 5075761 ~ 5076034 (-)
G33333 NA non-coding downstream 88675 5034111 ~ 5053903 (-)
G33332 NA non-coding downstream 108624 5032563 ~ 5033954 (-)
G33330 NA non-coding downstream 114763 5024945 ~ 5027815 (-)
G33310 NA non-coding downstream 226827 4913881 ~ 4915751 (-)
LOC122344984 LOC107597340,LOC107752133,LOC107684988,LOC107672606 non-coding upstream 404915 5574164 ~ 5597629 (-)
LOC122344983 LOC107684988,LOC107597340,LOC107752133,LOC107741245,LOC107672606 non-coding upstream 418796 5588045 ~ 5595174 (-)
G33409 LOC107684993,LOC107597297,LOC106585658 non-coding upstream 432160 5601409 ~ 5602204 (-)
G33423 acacb,LOC107752147,LOC107654593 non-coding upstream 449016 5618265 ~ 5620705 (-)
G33434 NA non-coding upstream 484831 5654080 ~ 5654764 (-)
G33175 NA other downstream 519520 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 949497 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 1244000 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 1389814 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2182401 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 1654922 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 1753597 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 2213097 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 2537721 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 2549316 7718565 ~ 7721758 (-)

Expression


Co-expression Network