LOC122345815


Basic Information

Item Value
gene id LOC122345815
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 679630 ~ 690036 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251037.1
TCCAttcaaaataggcattttaaTAAACGATTGGTGGGGTATTTTGAGatgaaacttcacagacacataCTGGGGACACCTGATCAACTGCAAAGGTTTCCAAACAGGCTGCTAACTAAAGTAGagcttttgttaaataaaacgtGGAAttgctttaattacatttttaaattaggaTTCTTTTTTATGAAGTGTTACTTTGTTCCACACACAAGTCAGTCACATCGAGAGATTTTTAGTGTGCCGCTGCGCCTGTAATGAGATACAGATGCTTGTGCCAAACTACCTGTGCCCCGGCCGCCCACCGCATCTCCTCTCCGAGCATCTCTTCAAATCCCGAAATCAGCCAAATGACTCTGGGGGGTCCAGACTTCAACTGTGAGCATTAGCCTTTGAATAAACAATTACCGAAGCGCGGCCTCCACAGCCTTTCTGGACAATGATGGCGCGATAATGATGCTCCATGCTTCCATGCCATTTCCTAGTATTTCAACAGCGCCACATCCTCTCCAGCAATCCCTGTTTCCATGCCAACCGCATCCTCCGTCCTCCTGCCTGCAACTCCGCAgaacaataaacacaaaaaggGCTGATTATGGATTTCATAGCCATCACACCTGTATTGATCCTGTTTGTCTTTTTGAAGTGATGGAAGATGATAATGTACGGCGACTCGGACGGCGTGTCCTCCGCCTGAGCCTGCGTGTCGGTGATGGAGGTGTCCCGTTGAAGCTTTGATGCAAGATCTTGACAGCCGTAGTGACCGGCGCATTGATCGAGTCATTAACAGGAGGGGGAGAACAATGGCTTGGCGAGATGTTCTTGATCCTGAAGTTGATTTTAGAAGACTTGGAATGCAGCGGATAAACAGATTTTATGCTGACCAAAGTTACTCCCAGAACAGACTTTTGGTGGGAAGCCTGGGAACGAAACAGAAGCCATTCGCCTCATTAGAAGTCAGCGTGCCATCTAAATAATTTGGAAACTGAAATTTCAAGGTAAAATACATCGCAGCAAATGAACTCATCTATCTCCAAATATCTTGTGCACTCCGTTCACGTAAATCTTTCATTAGCCAGATAAGAAAACGAAAAGGGGGTGGAAAATCCAACTCTAACATTAATTCCCATGTTCTGTAGTTAGCAGCTGTGCGTGATTAGAGCCGAGTGTGTCGTGCCCTCTTGACCCTCCTTGTTTTTAGACGAATTAACGGCGACACGCCTCTGTGCCTGCTTTACTCATCATCTTCATTCAAGCTCACCGCTCTCCCAGCCTGTCCTGCGGTAGCGTAATAATGATTTACATGAGTGAGTTATCAGTATGTGAGGATTAAATGACACATGCTGTAGAGAGTTTTATTGGCAAGGAGATAAAATCAGTGAGGATAATGTAGTTTGGACATGAAATGTGCCAGAATTAGCCGTACAAAATAAGACACGGCAGAGTGGACTGTCAAAATGCCATGAAATGACtgatatttacacacatttggGATTTGGGCTTTTTCTCAAAGATAAACTTTGCTAATTAGGGGCTGGGAAAGTTTTGTAAATGCTTTAGAAAAGAATCGCTGGTACAATAAGTTTACAATGTGGGTACACAAATATGCACTAATTCTTGCTTAACTAACGCACAAGTAATCGCAAGTAAATGGACTAAACCATTTATCACTACTACATCAGCAGGGGTCGTCGCTAGTGAGGTGAAAAGGGTGACATAGGGCCCAGATGTCTGGCGGCCCATAATCGCCTGCTGGCCATAGGGGACACCGGGACATTCCATTCGAGTTATTAAGCGCTGTTTTTAAACTACATCACATGCTAAACTGCATAAAACAAGCTGATGCTGTATGAAAATGAGGACCATGGTTTTACTTCTTATGACCACCATCTTAATACTAGTCAGTTAAACTCTGaatacttctttctttttagatttttagtttGAATGACTTTTTATTGACGCGAACTGTTAATTCAGTAAGGGCCTGATTAAAGAAAGATATCGGTGTCTTAAATAAATTAGGTGTTCTTAAAGGGAGATATAccgaaaaaaatgaatattgtcAACATTTACTTGACATTaagtctttccaaacctgtttgaattTCTTTCTCCTGTGGAACACAATTTGAgagacattttgaaaatttttGTAGCattctacaaaatatctttagtgttccacaaaagaaagtcatgagggtgaggaaatgatgacagaatttattagCAGTAACTTTCCAGCAGTCTAGCTCGAAATCAATGCTTTGCTGTCAAGTGCTTTTCTGTGACAGAAATGCATTATGAAGTTTGTTGTATTTGCTGTGAACTCAGTAATATCTATCAGTATTCACTTCtgtcctatttatttatttttttcatttatttactccaGTTGAAGGCCCtattacacattaaaacattcaaggGGGAATTTGTGGGCTAGATGGGCTTGATatgttgaatttaattttgAGAATACGGCCCTGTATATCAGCAACTAATGAACATTACGTGATTCATAgattaagtaataaataaatgtgtcatGAAGTATTCGTTCCCTAATTACATAAATTCATACGTTAATTACCACAGTGGTCAAAtcaacaatttaattaattattagctaATGATTTGCAAAGGTATCATTATGTTATGACTTCACTTGTTGAGGCACAGAACTATGAACTAATTGTTCAGTAATAAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251037.1 True 2716 lncRNA 0.40 4 679630 690036

Neighbor

gene id symbol gene type direction distance location
hscb LOC107704372,LOC107751426,LOC107723301,LOC107667639,LOC107550281,LOC107567452 coding upstream 13759 661601 ~ 665871 (+)
LOC122344993 LOC107723300,LOC107667312,LOC107550274 coding upstream 32999 644255 ~ 646631 (+)
LOC122344762 gstt2,LOC107667312,LOC107723300,LOC107723302 coding upstream 35613 642273 ~ 644017 (+)
slc2a11b slc2a11b,LOC107653192,LOC107550296,LOC107751419 coding upstream 37803 632469 ~ 641827 (+)
LOC122345389 ugt2b3,zgc:172315,ugt2b1,ugt2b6,LOC107723313,LOC107725113,LOC107572263,LOC107667397 coding upstream 196207 464081 ~ 483423 (+)
scarf2 scarf2,LOC107704405,LOC107730837,LOC107566488,LOC107750756,LOC107667270,LOC107599162 coding downstream 386426 1076462 ~ 1101483 (+)
zgc:112294 zgc:112294,LOC107750763,LOC107667255,LOC107566480,LOC107599152 coding downstream 426103 1116139 ~ 1119635 (+)
fbxo21 fbxo21,LOC107726726,LOC107750754 coding downstream 567036 1257072 ~ 1264944 (+)
tesca tesc,tesca,LOC107726727,LOC107667246,LOC107750755,LOC107566489 coding downstream 576041 1266077 ~ 1271257 (+)
spring1 zgc:110063,LOC107667499,LOC107755806,LOC107599146,LOC107704950 coding downstream 617527 1307563 ~ 1310993 (+)
LOC122346116 NA non-coding upstream 54017 622283 ~ 625613 (+)
G32067 LOC107751416,LOC107579531,LOC107653145,LOC107550279,LOC107667655,LOC107723311 non-coding upstream 58591 617200 ~ 621039 (+)
G32042 ddr2l,LOC107725118,LOC107550294,LOC107723312,LOC107594585,LOC107704361,LOC107667359 non-coding upstream 119022 556725 ~ 560608 (+)
G32032 NA non-coding upstream 180730 497691 ~ 498900 (+)
G32026 NA non-coding upstream 193390 486003 ~ 486240 (+)
G32234 NA non-coding downstream 10069 700105 ~ 700341 (+)
G32237 NA non-coding downstream 13729 703765 ~ 704188 (+)
G32280 NA non-coding downstream 360072 1050108 ~ 1050352 (+)
G32281 NA non-coding downstream 360353 1050389 ~ 1050614 (+)
LOC122346206 NA non-coding downstream 599264 1289300 ~ 1293600 (+)
tal2 tal2,LOC107594599,LOC107725114,LOC107723303,LOC107667406 other upstream 228265 450168 ~ 451365 (+)
LOC122346012 cunh9orf84,LOC107704297 other upstream 232144 432779 ~ 447486 (+)
susd1 susd1,LOC107594557,LOC107704917,LOC107572260,LOC107667560 other upstream 248165 419242 ~ 431465 (+)
G32004 LOC107725159,LOC107594583,LOC107704910,LOC107667568 other upstream 271969 402573 ~ 407661 (+)
rchy1 LOC107725104,LOC107723308 other upstream 285166 389910 ~ 394464 (+)
G32277 NA other downstream 365157 1055193 ~ 1057153 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other downstream 422228 1112264 ~ 1115405 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other downstream 1101792 1791828 ~ 1793266 (+)
G32611 prrc2b,LOC107704672 other downstream 1132618 1822654 ~ 1826114 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other downstream 1145112 1835148 ~ 1843013 (+)

Expression


Co-expression Network