LOC122345883


Basic Information

Item Value
gene id LOC122345883
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3180809 ~ 3186522 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251051.1
GCTACCGTGAAAGCCAGAACTTTCGGAGCACCtgctgacaaacacacactcacgcagaGACACTGAGAGGAGGAGGGGGAATTCTGGGATACTGGAAGAAAGGAAGTAAAGCACCCTGAGATTTAGTTACGAGCAACCTGAGAACTGTGGGGGATGGATgtgagacgagagagagagagagagagagagagattaaaggAGAGAAAGGAGTGTCTGACAAATGGATCGAGTAAGGGAAGAGAGCTAGgttcttcctgaagacctaGCGTACATCATCTTCACCGATCCGAAGGCGTTAATGGTCGTGTGGAGAGATGGGTGTGGAGTGTCAGGCTGGGATTCTCAAAACTACGACAGCATCAAAAGACAGGTTCAACTTTTTGGACAAGGACTCTTTCATATCAGTGGCGTCACTGACTTCAAAAGACTCTTCTATGGCATcacaagaagaaaaaagTAGACGAGATCAGTGCCAGCGAGGATTTGGAATTAGATGACTCAAATTTTCCTTTCTGAAGATCCTCCTGGGTTGATTAGCTCAGCGTGTGTGCGTGGGACTAAGCCACCAGGGCAGCAAGCGGGCCGATATAACGTCCCTTTAAACCCCAGAGCACAACTAACACAGAAAGACCCACAGCAGGACAAACACGCACTCACTTCGtggcGGAAAACTCATTCTATActaaacagatgataaaaaataaaagaaagaaatgaagaaaggaAGCTCGTTTCCAAGTAGGTTACTTTTCACTTGACTCTGTCAGTATTTAGTTTCATtccagaaagagagaaagagaagaagcaGATCATCCGAGAGTAAGTATAGCAGAAGACACAGGATTATGAGGCTCACACAGAATTTATATCAAAtgtccccccaaaaaaacaggtttttgaaGAGGTGACAATGGAGTGAGGGAGAGAATGAATGAGTGAGCGAGTGATAGCAGTGAAGTGAAAAACACCGAAAGAGAAAGCTGGATCTGAGACGGCAGATGGTTTGCTGATATTAAGAATCTCTAGAGGTTTGGCGTGTGAGGAACGTGAGGAACGCTGACCACATGCAGACCGAGAGTGTGTTTGAGGACAGACAAACCCTAATACTGGGGAAGATTCAGTTTGATCCGCTTTAGAGACACCTATTTTCATAAATGacgttaaaatgtaatttattcatgcgaTGGGAAAGATGGATTTTCAgtgtcattactccagtgtttGGTGTctcataatccttcagaaatcattctaatagcCGCTCGAGAAATATTAGCGATATTATTAGCGATATTGTAAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251051.1 True 1302 lncRNA 0.44 6 3180809 3186522

Neighbor

gene id symbol gene type direction distance location
hk2 hk2,LOC107668748,LOC107755855,LOC106585103,LOC108255852,LOC108411364,LOC107708252,LOC107599625 coding upstream 368389 2759355 ~ 2812420 (+)
LOC122345789 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 coding upstream 455385 2717013 ~ 2725424 (+)
LOC122345384 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 coding upstream 649216 2528502 ~ 2531593 (+)
LOC122345419 man1b1b,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 coding upstream 903775 2270213 ~ 2277034 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding upstream 916224 2249658 ~ 2264585 (+)
pebp1 pebp1 coding downstream 231382 3417904 ~ 3422144 (+)
suds3 suds3,LOC107569732,LOC107708245 coding downstream 310727 3497249 ~ 3505203 (+)
hspb8 hspb8,LOC107720866 coding downstream 423950 3610472 ~ 3619055 (+)
LOC122345442 NA coding downstream 436620 3623142 ~ 3650703 (+)
znrf3 znrf3,LOC107707852,LOC107656810,LOC107560969,LOC107755873,LOC107702225 coding downstream 491066 3677588 ~ 3747908 (+)
G32819 sema4c,LOC107557380,LOC107708238,LOC107699920,LOC107697240 non-coding upstream 156321 2948093 ~ 3024488 (+)
G32798 NA non-coding upstream 313436 2866166 ~ 2867373 (+)
G32770 figla non-coding upstream 571208 2608216 ~ 2609601 (+)
G32749 NA non-coding upstream 581170 2598250 ~ 2599639 (+)
G32765 NA non-coding upstream 601026 2578586 ~ 2579783 (+)
G32934 NA non-coding downstream 106752 3293274 ~ 3293558 (+)
G32955 NA non-coding downstream 200972 3387494 ~ 3387728 (+)
G32956 NA non-coding downstream 201779 3388301 ~ 3389487 (+)
G32992 NA non-coding downstream 319126 3505648 ~ 3506710 (+)
LOC122346010 NA non-coding downstream 464887 3651409 ~ 3652844 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other upstream 531448 2627084 ~ 2649361 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other upstream 912615 2265145 ~ 2268194 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 1161659 2010217 ~ 2019150 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 1275310 1900627 ~ 1905499 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 1337796 1835148 ~ 1843013 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 142278 3328800 ~ 3343070 (+)
G33015 NA other downstream 418664 3605186 ~ 4144396 (+)
G33174 NA other downstream 1435985 4622507 ~ 4623060 (+)
fbrsl1 LOC107656817,LOC107600129 other downstream 1457579 4644101 ~ 4902403 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 2417811 5604333 ~ 5649885 (+)

Expression


Co-expression Network