LOC122345920


Basic Information

Item Value
gene id LOC122345920
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12645284 ~ 12647088 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251058.1
cttgtggggacatttggtccccataacgtgataaataccaggtgcacacacacacatacacacaatgcAGTCTCTGAAGACAAAGAAACCTAAAGATGTGTATGTCTTGCGTCTATTTATAACCTTCAGGTGCACATAATCAAATGACATCAGCTGCCGAGGTTATTTAAGCCAATtattggcgtgtttgacacacatgctgcacaaccagtcaaaaaaaaaaatttctcagCACTTTTCAGCACAGCATCGAGATTAGCTTTTGAAAGCGAACACGCAGTTGCTAAACGCATAGAGgACATCGCTCTACAGGAAGTAACAGAATTTTGCTCATCCATCACAGAATGGATTGCATATGATTGTGGGATGTCAAAGGCAGTGAAGGATACGGTACATCTGTGCTCCCTTCAAAAAGCAGATGACGTCGCAAGAAATAAAGCTAACTTGATTGGGACATGCCTTGATGCTTTACTACCTTGAAATACGTCCTCCCAAGGcagcatttttcagttttcgGGCGCAACCATTAAATATTGTTAGTGAGTGCTGGAAAATTACATTCTATATGATTCACGTTATTAAATGTCATCTTTCATatcaaattcttacattttattaataattttgtttattaagacaCTATAGGGCTATTCCAAATCAACTGAAATCAGTTTCAGCAACATTGATCTTTCATGAAATTTAAAGGAGTCTTTCGAGAAACAGAAGCAGCCAAAAATTAATGgtatttttcatgcattcacgcattaatacacaaatatgAAGTTTTAGGAAGAAATGCAAAGATATGCtacttttagattttaaagtaCACCGCTGCTTCGAGATGCACAACACTGCTGTGATCTTTGTTTGGAGCCATTAACATCGAGCAGAAACGGTCAGAGTTCACAACACAGTCAACGCGCCAATGTGGCTAAAAGGAGTGATGCGTTAAAAGCCACTGCAGAATTTGGCTTGGTGGATGTTAATGTTAAGCCCTGTCTGTAAGTAGAATTCAGATATCAAGAGAGAAGACATTTACATGTAAGCTAACTTTTATTTGGCTAACTTTAGCTCTTTAGGGTACTTCCATCCTATTACACAGATCATCTTGTTTGGCATTCTATTAATTTTCATTCCATAGTGTAATTAATTTATGACAAGTTTAAGTATCTGAGCCTGCAAAGGTACACACCTTTGAATATATAACAACTTGTACTTTTCTTGTTACCagatacaacaaaataaaaaatacaaattgctTCCTGACTTACCTTATTAGCCTTGAAGCACCGTTCAGTGCAACTCACACAGGAGGTGTGTCATCATCACTACTTAACCCAGTTACaggaaatgttttgctttaCCAAAGAACATTACATCACCTCGACATTTTAGTTACAACAAAAGCAGGGGCCTTTACCTTTAAATCTTTCAAAGACACATGGACAGTCAAATACTACTTTATTGAACTTAACATGTTCTTATGGTGTACTTGAGCCTGAATAATCTGATTCTGTGAATTAAATTAACAGCTCAACTTAACTATTTGATcttctgaatgattcattactAGACCTAAAACACCTTATtgtaatactttacaataaggttcattagttaacaacattagttaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251058.1 True 1638 lncRNA 0.36 3 12645284 12647088

Neighbor

gene id symbol gene type direction distance location
wscd2 wscd2,LOC107597274,LOC107743343,LOC107741214,LOC107696066 coding upstream 6010 12595277 ~ 12639274 (+)
si:ch211-225b11.1 si:ch211-225b11.1,LOC107743342,LOC107597273,LOC107654634,LOC107595947,LOC107696069,LOC107741213 coding upstream 65573 12564192 ~ 12579711 (+)
pik3ip1 pik3ip1,LOC107576614,LOC107654636,LOC107741209,LOC107696071,LOC107595949,LOC107743346 coding upstream 105464 12532379 ~ 12539820 (+)
camk2b1 camk2b1,camk2b,LOC107696072,LOC107741206,LOC108255499,LOC108444312,LOC102293296,LOC100695100,LOC103134902,LOC107386224,LOC107103247,LOC108242787 coding upstream 135276 12457911 ~ 12510008 (+)
si:dkey-13n15.2 si:dkey-13n15.2,LOC107743336,LOC107595973,LOC107654639,LOC107575942 coding upstream 188231 12434336 ~ 12457053 (+)
ficd ficd,LOC107741218,LOC107711781,LOC107597275 coding downstream 33593 12680681 ~ 12683727 (+)
dao.3 LOC107727161,LOC107654625,LOC107597279,LOC107741224 coding downstream 147131 12794219 ~ 12797438 (+)
LOC122346075 LOC107654625,LOC107597279,LOC107741224,LOC107727161,LOC107696048 coding downstream 151036 12798124 ~ 12802870 (+)
usp30 usp30,LOC107727160,LOC107741225,LOC107597278,LOC107696057,LOC100537262 coding downstream 173517 12820605 ~ 12826178 (+)
pxmp2 pxmp2,LOC107597355,LOC107595932,LOC107727154 coding downstream 179502 12826590 ~ 12829604 (+)
G35864 NA non-coding upstream 3639 12640267 ~ 12641645 (+)
G35855 NA non-coding upstream 94104 12548666 ~ 12551180 (+)
G35834 NA non-coding upstream 101196 12536738 ~ 12544088 (+)
G35756 LOC107557121,LOC107597264,LOC107672815,LOC107663216,LOC107557098 non-coding upstream 286486 12356438 ~ 12358798 (+)
LOC122345282 LOC107597264,LOC107672815 non-coding upstream 357906 12278130 ~ 12287378 (+)
G35847 NA non-coding downstream 120860 12767948 ~ 12768550 (+)
G35903 NA non-coding downstream 235172 12882260 ~ 12882512 (+)
G35904 NA non-coding downstream 237917 12885005 ~ 12885284 (+)
G35905 NA non-coding downstream 238243 12885331 ~ 12885934 (+)
G36062 NA non-coding downstream 461544 13108632 ~ 13108853 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 116494 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 389612 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 702174 11924228 ~ 11943110 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other upstream 992601 11638516 ~ 11652683 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 1341853 11266642 ~ 11303431 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 56264 12703352 ~ 12705245 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other downstream 156701 12803789 ~ 12807351 (+)
ins ins,LOC107596207 other downstream 1337009 13984097 ~ 13985706 (+)
G36495 NA other downstream 1643332 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 1652955 14300043 ~ 14305304 (+)

Expression


Co-expression Network