LOC122346010


Basic Information

Item Value
gene id LOC122346010
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3651409 ~ 3652844 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251072.1
tacaCTATAACAAGGACACCTCAAAATAAAGCGTAACACTTCTTTCTAACTAAATATTAGGTATCTCATGTCACAATATTTCAGTATTGCTGTGCTCAGTTTTCACGTTCTCTCCCTTCTCTGTTTGATCAAAAGCACGTTTGGATTACATGCAAAGGGAGAAATTAACTTTCACTCCAGTAAGAGGTATTTTTATAGCCGCTACTGAACTAAAGTCCCGGTCGCCCTAGACAGACATCCATGTGTCTGTTACATCAGTTAAATCCCTCGAGTCCCTCTCTGTTCACTCATCCCACTCAGTCCATGTTGCTCTGTGCAAGGCCAAATACTGCAGAagtaaaaaagtttttcttttattcgtTCTGGCATTAATGACCTTATTTGACAGGTAAACCGTGTCTGATAAACTCGTCCCTCTTATCATGGCCCGCGTGTGcctttaaaatcagtttaagtGTAAAGCAGAAGTTCTTATCCGCCGTGATAGGCTTGTCCTGTTTTTCCCCTCAGTGGGAGAAACCCTGGGGTCAGAGTTAACCCAGGGGCATGATGGGTAGAGGAAGGGGAGCCGCGCCGGTTTCCAGACATTTCTAGAATGCCTCGGCGTCTGCGTCCGGGACACGTCTCCGCCTCCTTCGGGATTTCTGCGGATTGCATTACGCCTGTCCTCTTCACAAACACGTTAGCTGTTGCATTAGGTTTGTTGTTCTGAAGCGATACATTAGTGCGTGTTTCTGCCAGACGCTTAGAAGTGAGACAGAAGGGAAAATTCAATATTTACTCTTGAGTTCCCGGCAGCCCCCTCCAGATGGACACCGGATGGAAAGCCTTCAGTCACGATATAATGAACTttgaacttctttttttatttgtttttatctatAAAGAAACATGGTTTACTTGTATATGattttgaaactattttaaatgaaagctaTTTTATATTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251072.1 True 950 lncRNA 0.43 2 3651409 3652844

Neighbor

gene id symbol gene type direction distance location
LOC122345442 NA coding upstream 706 3623142 ~ 3650703 (+)
hspb8 hspb8,LOC107720866 coding upstream 32354 3610472 ~ 3619055 (+)
suds3 suds3,LOC107569732,LOC107708245 coding upstream 146206 3497249 ~ 3505203 (+)
pebp1 pebp1 coding upstream 229265 3417904 ~ 3422144 (+)
hk2 hk2,LOC107668748,LOC107755855,LOC106585103,LOC108255852,LOC108411364,LOC107708252,LOC107599625 coding upstream 838989 2759355 ~ 2812420 (+)
znrf3 znrf3,LOC107707852,LOC107656810,LOC107560969,LOC107755873,LOC107702225 coding downstream 24744 3677588 ~ 3747908 (+)
LOC122345408 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding downstream 251134 3903978 ~ 3940975 (+)
LOC122344976 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding downstream 722959 4375803 ~ 4409270 (+)
chfr chfr,LOC107656818,LOC107548943,LOC107600128,LOC107672629 coding downstream 1260485 4913329 ~ 4928533 (+)
ascc2 ascc2,LOC107707848,LOC107741258,LOC107600125,LOC107548944 coding downstream 1349164 5002008 ~ 5008609 (+)
G32992 NA non-coding upstream 144699 3505648 ~ 3506710 (+)
G32956 NA non-coding upstream 261922 3388301 ~ 3389487 (+)
G32955 NA non-coding upstream 263681 3387494 ~ 3387728 (+)
G32934 NA non-coding upstream 357851 3293274 ~ 3293558 (+)
LOC122345883 NA non-coding upstream 464887 3180809 ~ 3186522 (+)
G33018 xbp1 non-coding downstream 7023 3659867 ~ 3662929 (+)
LOC122345412 NA non-coding downstream 603334 4256178 ~ 4282937 (+)
G33077 NA non-coding downstream 675354 4328198 ~ 4329596 (+)
G33079 NA non-coding downstream 683528 4336372 ~ 4337998 (+)
G33167 NA non-coding downstream 939752 4592596 ~ 4592852 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other upstream 308339 3328800 ~ 3343070 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other upstream 1002048 2627084 ~ 2649361 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other upstream 1383215 2265145 ~ 2268194 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 1632259 2010217 ~ 2019150 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 1745910 1900627 ~ 1905499 (+)
G33174 NA other downstream 969663 4622507 ~ 4623060 (+)
fbrsl1 LOC107656817,LOC107600129 other downstream 991257 4644101 ~ 4902403 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 1951489 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other downstream 1972423 5625267 ~ 5648047 (+)
tnpo1 tnpo1,LOC107700926,LOC107655929,LOC107596175 other downstream 2306988 5959832 ~ 5982816 (+)

Expression


Co-expression Network