LOC122346170


Basic Information

Item Value
gene id LOC122346170
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1762921 ~ 1765407 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251105.1
tttttttttttttttttttaacgcttaCATTTAAATAGGCCTATACATTAATCACTGCTATGAGAATGAAACCGTTTGATGCTATGCATTCGTAACCAGCAATGCTTCCATCTCCCTGTAACTCCCCACTGAACAGAGCTGGTAGGTGTGTAAccatatatttagatttttatttataatgaaggAGCTCTTCCAGAAGGCAGAAGGAAGGGATGATTCTCTTGTTTGAGCCAGATCGGTGGGGGATGGGACTATTTGTAAGGAATGTAGGGGGCAGGTCCCTTTCCAAGAGGGGAGGAAAGGAAAGGGAGGGAATGCGAGGAGGGGAGGTCGCCCATAGTGACATTTTACTCTTGGTCAGTATCTGCAAGGTTATGCAAGTTGAACTTTTTGGTTGTCTCATCAAAAGACTGGACATCTGGCCAAAACGAAGTGTAATCTATCGGTTGATACGTAGGGAGGTCAGCGTGTGTGAATGCACTGGCGCAATACATCCTGATTTATATGCGTGCAGAAGTGATATGTGTCACCCTGGCGACTcgcatatttttaaagcaaatatgcTGCATGCGATtcgtgcaaaaataaatacaatttcttaCACGATGCGCGCGGAGTTATTTCGGTATTTATTCTTGTGAGTATTGTTTTTTTCGTGTTTGGGGTTTAACATCTATGTGGTGTAACTGCCGAGCTTGtaaaaaccttaatttaaagggaaaaaaaatattgagtgaAAAAACAATATTGACATAAGACaatatatggattttttttacttaatacaTCTAATATTTACAGTCGCGTGTTCTAACAAACAATCTGCAACCATTTTGTTGTCATATGACTCGCCTGAGtctagattattttattataaaaccatCCTCTTATGAAAAAGCACTCTTCATTCACTGCTTCAAATGAGGTATAGGGACTTCGTCACAGCGCAACTTTATGATATTTATGACATTGCAAAAAATCTTAACAGTTGTGCAAATTCACGTGAATCCTTTTTAAAACTTCAACTTGTATTGTTTGCACTGGTCCGTTCAAAAAAACCCGATGCACGACAATTTGGCACGCGCGTTTTAAACTTGACAATTAAAAGACTTATTTTTATCATCCGGTGCATTTGTCGTTGACCCGTATGTACAGAGGCTCCACAGCAGAAGGTAAGCTGGAGACTCACCGGTCTGAACTGGGTGTATGAGGAATGTTGCGCTAAATACCGCAACGCGCATGCGCAGCGCATTCACAGGCCACTATATAGCATACTGAGGCCTACAGCTCCTCCGTTCTCATGATCCTGGTTCAGCTCTCAGCTAGTGGGCTTTGAAGCTTCACGTGAGGATTGGGCGTCGTGTTCTCGACCTGTTGTCGTGATTCAACATTTTGACTGCAAGTTAACTGCACGGAACCTGATTGGTAAATTGTTTAACGTGTTTTATTACCGAGGGGGACAAGTAAGATCATGCATGTGAGTTCAATGTGAAATTcccaaaggagaaaaaaaaaacatcctgttGGAGCATGTCGTTAACTCCAAGGCAGAAGCTGGTATGCTTGGAATTGCAGAGCACCAAGACTGCTTTTGGACGCAGATAACCAAAGGGCCTACAATATGCTTTCCACTCTGTTTCTCATATTTGAATGCCTGAGTCAGTCCACCAGCGTGGCTTCAAAGGAATGCGTCTTTATTGatagcatgcatgcatgtattggTATTAGATGATTGTTTTTAAGTAGGCTGTTTAAAACGCCAGATGTGCTAAAAATGacgtttttgaaaaaagtcacatttgttATTCTAAATGTTCATGGTGATTTCTGTTGTATGCTTAAGGGTGAAAGCGGTTAAACTCAATGTAAAAACCCTCAACGTTTTTGCtctattaaacacattttatacgAAGCGTGTTGTTTAGCAGCAAATAAACTGCACAGAATTCTgcttaaaatgaattttgagTTGCATTTTGCCATTGACTCGGTTCGTTTCTAGGCTGTGTAGGGTCAGATGTCACAAAGAGGTTTACGTATCGTGTGTAGTAGAGCAGGAACCATTTTCAGTCTCACCATTTAGGCATTTAAACCCCTAGATATTATGTTTTGCTCAGCCGCGCTATCTTTTTGCTAAAGTGCTGTGATTTATCATGCTTAATAAATCTTGCAGGCGAGACCCTATCAATATTGCCTCTGCTTTTTTCACTGTTTATGGAGTAGTGCAATATTGCTTATAGGGTCTTGACTTTAAGGGTAATCTGCAATTTCAGGAACGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251105.1 True 2280 lncRNA 0.40 2 1762921 1765407

Neighbor

gene id symbol gene type direction distance location
LOC122344671 LOC107755842,LOC107599645,LOC107599132 coding upstream 17750 1743315 ~ 1745171 (+)
ppil2 ppil2 coding upstream 110505 1623097 ~ 1652416 (+)
gal3st1a gal3st1,gal3st1a,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding upstream 140594 1616062 ~ 1622327 (+)
pes pes1,pes,LOC107704970 coding upstream 150373 1603813 ~ 1612548 (+)
pole pole,LOC107704563,LOC107668756 coding upstream 165193 1579923 ~ 1597728 (+)
ydjc LOC107741491,LOC107704612,LOC107599608,LOC107755843,LOC107668745,LOC107599128 coding downstream 8558 1773965 ~ 1779426 (+)
ccl19a.1 LOC107704652,LOC107741512 coding downstream 29127 1794534 ~ 1796438 (+)
tctn2 LOC107704714,LOC107741513,LOC107599155 coding downstream 31427 1796834 ~ 1806041 (+)
sec14l8 sec14l8,LOC107741494,LOC107599607,LOC107668747,LOC107704732,LOC107755846,LOC107599126,LOC108431737,LOC108255515 coding downstream 41543 1806950 ~ 1820557 (+)
LOC122346045 ddr2l,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312 coding downstream 86200 1851607 ~ 1864706 (+)
G32540 NA non-coding upstream 639 1762005 ~ 1762282 (+)
G32539 NA non-coding upstream 950 1761564 ~ 1761971 (+)
G32538 NA non-coding upstream 2691 1759994 ~ 1760230 (+)
G32513 mapk1,LOC107386038 non-coding upstream 56034 1705974 ~ 1706887 (+)
LOC122345819 NA non-coding upstream 65247 1690109 ~ 1697674 (+)
G32542 NA non-coding downstream 1189 1766596 ~ 1766890 (+)
G32552 NA non-coding downstream 19994 1785401 ~ 1785642 (+)
G32643 NA non-coding downstream 192711 1958118 ~ 1958584 (+)
G32644 NA non-coding downstream 200772 1966179 ~ 1966378 (+)
G32646 NA non-coding downstream 226142 1991549 ~ 1993168 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 647516 1112264 ~ 1115405 (+)
G32277 NA other upstream 705768 1055193 ~ 1057153 (+)
tal2 tal2,LOC107594599,LOC107725114,LOC107723303,LOC107667406 other upstream 1311556 450168 ~ 451365 (+)
LOC122346012 cunh9orf84,LOC107704297 other upstream 1315435 432779 ~ 447486 (+)
susd1 susd1,LOC107594557,LOC107704917,LOC107572260,LOC107667560 other upstream 1331456 419242 ~ 431465 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other downstream 26421 1791828 ~ 1793266 (+)
G32611 prrc2b,LOC107704672 other downstream 57247 1822654 ~ 1826114 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other downstream 69741 1835148 ~ 1843013 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other downstream 135220 1900627 ~ 1905499 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 244810 2010217 ~ 2019150 (+)

Expression


Co-expression Network