G42960 (LOC107584764,LOC107677591,LOC107743335)


Basic Information

Item Value
gene id G42960
gene name LOC107584764,LOC107677591,LOC107743335
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 5139399 ~ 5238937 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU63634
GCGCAGGGTCCTGGAGGTGAAGTCCCACAGCGCGATGGTCCCGTCGGAGCCTCCAGACACCAGGTAAGAAGAGTCTGGAGAGAAGGCGCACACCCTTACCGGACTCCGGCCCGGATGCTCCAGGACGGCCTCGATCTCTCCGGTGTCCATCGACCACACCACGGTGGTGGCATCGGTGGAGCAGGAGGCCAGGTACTGCCCGCAGGCGCTGAAGCAGCAGCAGTGCACCCCGTATCCGTGTCCGGACAGCGGGGAGAAGGACAGCTCGCTGAAGTCTCGTGTGGAGTAAACGCAGATGCTCTTATCAGCCGAGCAGGTGGCCAGCAGAGCGCCGGAGAACGCGCAGTAGTTCACGTCGTCGCGGTGACTTTGTAAGCTGCCTCCAGTGGGCCACGACGCACGCGGGTGCTTCCAGGACCTGCTGTCCATCTCGGAGCGCCTCTGGGGCCAGGGATACTGAAGAATACTCCGACAGCTTTCATATGGGTTCAGGTATGAGTTTCGTACAGTATGCCTTTGAGTGGAGGCCTTGATGTGTTGTATATAAGAAAACAATAACGttacaaaaaaaagggaaaaaacgaaaccaaacaaaaaaagaacaaattattTTCCCTATACCCTGTTCTGAAGGGCAGGCACTACTAAGATTAAGGAGACCACAGTGTTTTGTAGAggatatgtatatactgtacaaacaataaatgtatattattaatcaCTTTAAGACTAAAATTAATTGCTACAAACGTTCTAAGGCATAAACAATATCCAATGTCTGAAACAATATGTACACATCATTCCAAACAAGACTCAATATATTGACATTAATAGACAGTATGTACACATGGGTGCCTCCTGCTTGTccgtgtgtgtatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagtgatGCCGTTAGTTCACGTTCAGAGGGTTGAATACTCTGATGCCACATGGCACAGAACAgtgtaaacagttttttttttttcttggctttgtttcatatttggagaggaaaaacacaaacaaataaacattccgttagatttaaagcagttttgctGTTTCTTCCTTTTCATAGAAAATGAAGAGTGGacctttcttttatttagtcataaataagcatttaaaaaattaaatacattcactATAATATTAAcgataaagtaaaaatacaaaaccaaaataaaaatatatttacaagtagtggaaagggatttttttttttttttttttttttttttttttgcatcaggTTGGTAAGCACTCTAAAgcttttcagttaaaaaaaaaaaaaaaaaaagaaatctggcAAACTGATGACCACCACGAGTGCTTTAACTATGCTTAGAAGCTGGATTGGGGAAAGAAAGTATGAATCTTGCAAAATCCTCTTACGTGGTGCAGTCGAGGAATATTCATCTGCTCGTTTATAGGGCTGCTTAAAAAGGAGATGTTTGTTTTCAAtgtctttttgatttttaaaaaagaaaaaaaataataataaatgaatcccTTAATTTTCTTGGTTTTATGTTAatgatatgcttttttttttttgttttttggatgaGTGAGAACATGTGGTCACTTTTCTTTCAAGACTTTCTCTTTACAGAAAACCTTTTCCacagtgtgtttgtatgttgtACATTATAACGGTGTAATTCGCttgaattattacaataaaatg

Function

NR:

description
PREDICTED: WD repeat, SAM and U-box domain-containing protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63634 True 1698 lncRNA 0.41 3 5139399 5238937

Neighbor

gene id symbol gene type direction distance location
LOC122347505 fam171b,LOC107742147,LOC107660062,LOC107584765,LOC107705581,LOC107555401 coding downstream 766 5131256 ~ 5138633 (-)
gulp1b gulp1b,LOC107677600,LOC107741734,LOC107705580,LOC107660061 coding downstream 64320 5033954 ~ 5075079 (-)
pjvk dfnb59,LOC107555423,LOC107584822 coding downstream 130436 5005451 ~ 5008963 (-)
pcnt pcnt,LOC107555398,LOC107677569,LOC107660059,LOC107743407,LOC107584825,LOC107705497 coding downstream 147955 4956348 ~ 4991444 (-)
trnak-uuu_105 NA coding downstream 183781 4955546 ~ 4955618 (-)
tanc1a tanc1,tanc1a,LOC107743188,LOC107688874,LOC107660065 coding upstream 8377 5247314 ~ 5309056 (-)
pkp4 pkp4,LOC107688875,LOC107705586,LOC107660066,LOC107709738 coding upstream 72687 5311624 ~ 5342802 (-)
c6h7orf57 LOC107688921,LOC107709739,LOC107555435,LOC107705587,LOC107660069 coding upstream 105374 5344311 ~ 5349557 (-)
gpd2 gpd2,LOC107709740,LOC107660071,LOC107705589,LOC107688873 coding upstream 135994 5374931 ~ 5399921 (-)
slc15a1b slc15a1b,LOC107660134,LOC107705529,LOC107584761,LOC107555411 coding upstream 195474 5434411 ~ 5443079 (-)
LOC122346990 NA non-coding downstream 258006 4867127 ~ 4881393 (-)
G42644 LOC101169590,LOC106917580,LOC108430882 non-coding downstream 434896 4698903 ~ 4704503 (-)
G42614 NA non-coding downstream 633732 4503734 ~ 4505667 (-)
G42615 NA non-coding downstream 636193 4502720 ~ 4503206 (-)
G42606 abi2 non-coding downstream 664607 4473919 ~ 4474792 (-)
G43019 NA non-coding upstream 415284 5654221 ~ 5654958 (-)
LOC122346635 NA non-coding upstream 506502 5745439 ~ 5747394 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding upstream 508829 5747766 ~ 5755464 (-)
G43161 NA non-coding upstream 757019 5995956 ~ 6483393 (-)
G43173 NA non-coding upstream 779503 6018440 ~ 6023510 (-)
sumo3a sumo3a,sumo3b,LOC103392195,LOC107668404,LOC108430868 other downstream 253050 4882787 ~ 4886349 (-)
LOC122347558 cycsb,LOC103040542,LOC108273362,LOC108430847 other downstream 313933 4818191 ~ 4825466 (-)
gpr155b gpr155b,LOC107740589,LOC107581372,LOC107584777,LOC107705544,LOC107677583,LOC107660045 other downstream 364853 4766381 ~ 4774546 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other downstream 400857 4709290 ~ 4738542 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other downstream 641981 4493912 ~ 4497418 (-)
adam23a adam23,adam23a,LOC107748557,LOC107705602,LOC107660086,LOC107688856 other upstream 383749 5622686 ~ 5639926 (-)
arl6ip6 LOC107688850,LOC107748576,LOC107705609,LOC107660093,LOC107566311,LOC107555419 other upstream 452544 5691481 ~ 5699650 (-)
mylkb mylkb,LOC107688847,LOC107748549,LOC107555454,LOC107705608,LOC107566310,LOC107660138 other upstream 484531 5723468 ~ 5736620 (-)
desmb desmb,LOC107566324,LOC107660100,LOC107705613,LOC107688844,LOC107566784,LOC107748575 other upstream 719856 5958793 ~ 5966604 (-)
cacnb4b cacnb4b,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 other upstream 802939 6041876 ~ 6524950 (-)

Expression


Co-expression Network