LOC122346634 (fmnl2,fmnl2a,LOC108273365,LOC108443439)


Basic Information

Item Value
gene id LOC122346634
gene name fmnl2,fmnl2a,LOC108273365,LOC108443439
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 5747766 ~ 5755464 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU63805
TTTGTCGAAGTCCGTCTGTTATCATCCACACAGCGCGGATTAACTGGCCTGCCCGAATCCGAGCCATGCGCGTTATCATGCCGCAAACCTCCAGCGGTGCATTTATTGTGCATGATACAGATAAATGCGCCCAGCTTCAGAGCCGCTGCCGCTGAGTGAACGATGCTCAACAGCTCCGAAAAATGAACGGAGGGCCCGACAGATACGGATTAACAATGTAGGGATGCTATTGTCGAATTCTCGCATCTGATACAGAGCTCTGCGGGTTCGCATCGATGGAGAGGGTGTCTGGTCGCCTATAAAAGCCTGCACTGTCTTTTTTTTGGGTTGCTTTTGCCTCTTGATTGCATTTTGGTGCTGAATACGTTTTTCTAAAGCGTTTACCGTCGCTGGGCATCAGACAAAAAACATGGGGAACGCTGAAAGTATGGATGCTCAGCTCACAGATTTCAGGGCGAGGGCAGCAAACCCCTAAACTGCCCATGCCGGACCCCGCCGAACTGGAGGAGAGATTTGCGATCGCACTGaACTCTATGAACCTTCCTCCGGATAAAGTGAGGCTCCTTAGACAGTATGACAACGAAAAAAATGGGAGCTGATATGTGATCAGGAACGATTCCAAGTGAAGAATCCTCCCCATACATACATTCAGAAGCTCAGAAGCTTCCTGGACCCTGCCGTCACCAGGAAGAAATTTAGAAGGCGGGTTCAAGAGTCAACTCAGGTGCTCAGAGAGCTGGAGATATCTCTTAGGACCAATCACATCGGGTGGGTGAGAGAGTTTCtcaatgaagaaaataaagggCTTGATGTTCTTGTGGAGTACCTGTCTTTTGCCCAGTATGCTGTCACaTTTGATGGAGATGTAACAGAGGCGCCACAGGTGAGACTTCTGTAGAGACCCTTGGAGCAGGTCTATAGAAGATCTCCATGGCGACAGCAATCTACCATCACCAGTCAGCGGCAGCAGCATACCACGATCCAC
>XR_006251148.1
CCCTAAACTGCCCATGCCGGACCCCGCCGAACTGGAGGAGAGATTTGCGATCGCACTGaACTCTATGAACCTTCCTCCGGATAAAGTGAGGCTCCTTAGACAGTATGACAACGAAAAAAATGGGAGCTGATATGTGATCAGGAACGATTCCAAGTGAAGAATCCTCCCCATACATACATTCAGAAGCTCAGAAGCTTCCTGGACCCTGCCGTCACCAGGAAGAAATTTAGAAGGCGGGTTCAAGAGTCAACTCAGGTGCTCAGAGAGCTGGAGATATCTCTTAGGACCAATCACATCGGGTGGGTGAGAGAGTTTCtcaatgaagaaaataaagggCTTGATGTTCTTGTGGAGTACCTGTCTTTTGCCCAGTATGCTGTCACaTTTGATGGAGATGTAACAGAG

Function

symbol description
fmnl2a Predicted to enable actin filament binding activity. Predicted to be involved in cell migration; cortical actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within actin cytoskeleton organization and regulation of cell morphogenesis. Predicted to be active in cytosol. Is expressed in several structures, including blood vessel; nervous system; neuroectoderm; optic cup; and polster. Orthologous to human FMNL2 (formin like 2).
fmnl2 Enables cadherin binding activity. Involved in cortical actin cytoskeleton organization and regulation of cell morphogenesis. Predicted to be active in cytosol.

NR:

description
PREDICTED: formin-like protein 2 isoform X3

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63805 True 985 lncRNA 0.50 6 5747766 5755464
XR_006251148.1 False 405 lncRNA 0.48 6 5747877 5754995

Neighbor

gene id symbol gene type direction distance location
fmnl2b fmnl2b,LOC107688848,LOC107660092,LOC107705607,LOC107566322 coding downstream 26119 5701022 ~ 5721647 (-)
kcnj3b kcnj3b,LOC107688851,LOC107705606,LOC107566319,LOC107555453,LOC107660091,LOC108443434 coding downstream 67862 5669451 ~ 5679904 (-)
eef1b2 eef1b2,LOC107688853,LOC107748554,LOC107705603,LOC107660090 coding downstream 99200 5646330 ~ 5648566 (-)
zdbf2 zdbf2,LOC107748555,LOC107688855,LOC107555446,LOC107660085,LOC107566316,LOC107705512 coding downstream 101823 5640280 ~ 5645943 (-)
LOC122346881 NA coding downstream 132342 5613345 ~ 5615424 (-)
LOC122346764 mylkb,LOC107748549,LOC107688847,LOC107555454,LOC107566310,LOC107705608,LOC107660138 coding upstream 1538 5757002 ~ 5770326 (-)
LOC122346765 LOC107748549,LOC107688847,LOC107555454 coding upstream 76520 5831984 ~ 5837061 (-)
chpfb LOC107748547,LOC107688915,LOC794660,LOC107705610 coding upstream 145674 5901138 ~ 5910744 (-)
cryba2a cryba2a,LOC107748546,LOC107566796,LOC107688845,LOC107566327,LOC107705612,LOC108437841 coding upstream 174866 5930330 ~ 5931637 (-)
LOC122346771 ptprnb,LOC107748541,LOC107688841,LOC107705616,LOC107660007 coding upstream 302734 6058198 ~ 6121716 (-)
LOC122346635 NA non-coding downstream 372 5745439 ~ 5747394 (-)
G43019 NA non-coding downstream 92808 5654221 ~ 5654958 (-)
LOC122346705 NA non-coding downstream 509071 5236821 ~ 5238695 (-)
LOC122346706 NA non-coding downstream 555767 5185601 ~ 5191999 (-)
G42956 NA non-coding downstream 574334 5159344 ~ 5173432 (-)
G43161 NA non-coding upstream 240492 5995956 ~ 6483393 (-)
G43173 NA non-coding upstream 262976 6018440 ~ 6023510 (-)
G43251 NA non-coding upstream 1059796 6815260 ~ 6823021 (-)
G43472 NA non-coding upstream 1674314 7429778 ~ 7430446 (-)
G43478 NA non-coding upstream 1705727 7461191 ~ 7498435 (-)
mylkb mylkb,LOC107688847,LOC107748549,LOC107555454,LOC107705608,LOC107566310,LOC107660138 other downstream 11146 5723468 ~ 5736620 (-)
arl6ip6 LOC107688850,LOC107748576,LOC107705609,LOC107660093,LOC107566311,LOC107555419 other downstream 48116 5691481 ~ 5699650 (-)
adam23a adam23,adam23a,LOC107748557,LOC107705602,LOC107660086,LOC107688856 other downstream 107840 5622686 ~ 5639926 (-)
G42958 LOC107742327 other downstream 517056 5229456 ~ 5230710 (-)
sumo3a sumo3a,sumo3b,LOC103392195,LOC107668404,LOC108430868 other downstream 861417 4882787 ~ 4886349 (-)
desmb desmb,LOC107566324,LOC107660100,LOC107705613,LOC107688844,LOC107566784,LOC107748575 other upstream 203329 5958793 ~ 5966604 (-)
cacnb4b cacnb4b,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 other upstream 286412 6041876 ~ 6524950 (-)
G43180 nck2b,LOC107688832,LOC107748532,LOC107660111,LOC107738306 other upstream 517859 6273323 ~ 6301137 (-)
G43248 pou3f3b,LOC107688836,LOC107559920,LOC107660107,LOC106574614 other upstream 1048594 6804058 ~ 6827728 (-)
trim63a trim63a,murf1,LOC107586317,LOC105896535 other upstream 1245651 7001115 ~ 7027427 (-)

Expression


Co-expression Network