G43180 (nck2b,LOC107688832,LOC107748532,LOC107660111,LOC107738306)


Basic Information

Item Value
gene id G43180
gene name nck2b,LOC107688832,LOC107748532,LOC107660111,LOC107738306
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 6273323 ~ 6301137 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU64004
CGAACGGGATTTTCCATTGCCCTGTTGCGAATGCACCCACAGCGTGGATATTCGGGATAAAGGTCGTTTCCGTCCGCATCCCTTCGCTTCCCCCCGAACTGTCCAGAGGCGACCTGTAAAGAGGGACTCCATGAAAGATGTCAGAGGAGGCGATTGTTATTGCCAAGTGGGACTATACGGCACAACAAGACCAGGAACTTGACATAAGGAAAATGAGCGCTTGTGGCTCCTGGATGATTCAAAAACATGGTGGAGAGTACTGAAATTCATCCAACAGAACGGGCTACGCCCCTTCCAATTACGTCGAGCGCAAGAACAGTCTAAAGAAAGGCTCTCTGGTGAAAAATCTCAAAGACACACTTGgcCTGGGAAAAACGAAACGTAAAACGAGCACACGAGAAGCCTCTCCAACACCAAGCACAGACGAGTACTCGTCTAACGGGGGTGGAGCAGAACGAATATATGACCTGAACACTCCGGCGGTGGTGAAGTTTGCCTACAATGCGGAGCGGGAGGATGAGCTCAGCCTGGTGAAGGGATCCCAGCTGATGGTGATGGAGAAATGCAGTGACGGCTGGTGGAGGGGCAGCTATAACGGTCAGGTGGGCTGGTTCCCTTCCAACTACGTCCAggaggaagagctggaggacTCCTCAGCCGACCTTCCCGACGTCTTCTCCTCGAGGCCGAGCCTCAGTAACGGTCAGGGCCCCAGAGTCCTTCACACCGTTCAGG
>TU64005
CGAACGGGATTTTCCATTGCCCTGTTGCGAATGCACCCACAGCGTGGATATTCGGGATAAAGGTCGTTTCCGTCCGCATCCCTTCGCTTCCCCCCGAACTGTCCAGAGGCGACCTGTAAAGgcCTGGGAAAAACGAAACGTAAAACGAGCACACGAGAAGCCTCTCCAACACCAAGCACAGACGAGTACTCGTCTAACGGGGGTGGAGCAGAACGAATATATGACCTGAACACTCCGGCGGTGGTGAAGTTTGCCTACAATGCGGAGCGGGAGGATGAGCTCAGCCTGGTGAAGGGATCCCAGCTGATGGTGATGGAGAAATGCAGTGACGGCTGGTGGAGGGGCAGCTATAACGGTCAGGTGGGCTGGTTCCCTTCCAACTACGTCCAggaggaagagctggaggacTCCTCAGCCGACCTTCCCGACGTCTTCTCCTCGAGGCCGAGCCTCAGTAACGGTCAGGGCCCCAGAGTCCTTCACACCGTTCAGG

Function

symbol description
nck2b Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in several processes, including cell migration; regulation of response to endoplasmic reticulum stress; and regulation of translation. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytosol and endoplasmic reticulum. Orthologous to human NCK2 (NCK adaptor protein 2).

NR:

description
PREDICTED: cytoplasmic protein NCK2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64004 True 735 TUCP 0.54 3 6273323 6301137
TU64005 False 493 TUCP 0.57 2 6273323 6301137

Neighbor

gene id symbol gene type direction distance location
LOC122346556 si:ch73-23l24.1,LOC107748583,LOC107559918,LOC107688887,LOC108437696,LOC108272416 coding downstream 5528 6260860 ~ 6267795 (-)
LOC122346636 LOC107660146,LOC107596333,LOC107738313,LOC107688886 coding downstream 14005 6255907 ~ 6259318 (-)
LOC122346771 ptprnb,LOC107748541,LOC107688841,LOC107705616,LOC107660007 coding downstream 151607 6058198 ~ 6121716 (-)
cryba2a cryba2a,LOC107748546,LOC107566796,LOC107688845,LOC107566327,LOC107705612,LOC108437841 coding downstream 341686 5930330 ~ 5931637 (-)
chpfb LOC107748547,LOC107688915,LOC794660,LOC107705610 coding downstream 362579 5901138 ~ 5910744 (-)
LOC122347608 gbx2,LOC107586371,LOC107688907,LOC107596335,LOC107677618 coding upstream 148636 6449773 ~ 6452200 (-)
gca LOC107688840,LOC107596329,LOC107660144,LOC107748540,LOC107705618,LOC108437831 coding upstream 182636 6483773 ~ 6488937 (-)
LOC122347602 LOC107748539,LOC107705619,LOC107688839,LOC107566793,LOC107660103 coding upstream 190645 6491782 ~ 6498216 (-)
inpp4ab inpp4ab,LOC107566790,LOC107705620,LOC107660104,LOC107748537,LOC107688837 coding upstream 225697 6526834 ~ 6562790 (-)
tgfbrap1 tgfbrap1,LOC107748533,LOC107688833,LOC107738304,LOC107596311,LOC107660108,LOC107559914 coding upstream 553203 6854340 ~ 6867062 (-)
G43173 NA non-coding downstream 249813 6018440 ~ 6023510 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding downstream 517859 5747766 ~ 5755464 (-)
LOC122346635 NA non-coding downstream 525929 5745439 ~ 5747394 (-)
G43019 NA non-coding downstream 618365 5654221 ~ 5654958 (-)
LOC122346705 NA non-coding downstream 1034628 5236821 ~ 5238695 (-)
G43251 NA non-coding upstream 514123 6815260 ~ 6823021 (-)
G43472 NA non-coding upstream 1128641 7429778 ~ 7430446 (-)
G43478 NA non-coding upstream 1160054 7461191 ~ 7498435 (-)
G43516 NA non-coding upstream 1496987 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 1555328 7856465 ~ 7857596 (-)
desmb desmb,LOC107566324,LOC107660100,LOC107705613,LOC107688844,LOC107566784,LOC107748575 other downstream 306719 5958793 ~ 5966604 (-)
mylkb mylkb,LOC107688847,LOC107748549,LOC107555454,LOC107705608,LOC107566310,LOC107660138 other downstream 536703 5723468 ~ 5736620 (-)
arl6ip6 LOC107688850,LOC107748576,LOC107705609,LOC107660093,LOC107566311,LOC107555419 other downstream 573673 5691481 ~ 5699650 (-)
adam23a adam23,adam23a,LOC107748557,LOC107705602,LOC107660086,LOC107688856 other downstream 633397 5622686 ~ 5639926 (-)
G42958 LOC107742327 other downstream 1042613 5229456 ~ 5230710 (-)
G43248 pou3f3b,LOC107688836,LOC107559920,LOC107660107,LOC106574614 other upstream 502921 6804058 ~ 6827728 (-)
trim63a trim63a,murf1,LOC107586317,LOC105896535 other upstream 699978 7001115 ~ 7027427 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other upstream 807025 7108162 ~ 7245179 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other upstream 973703 7274840 ~ 7314774 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other upstream 1015810 7316947 ~ 7329565 (-)

Expression


Co-expression Network