trim63a (trim63a,murf1,LOC107586317,LOC105896535)


Basic Information

Item Value
gene id trim63a
gene name trim63a,murf1,LOC107586317,LOC105896535
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7001115 ~ 7027427 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU64107
TTTGGCATGTGACTTGTTCTTTAGTGGGTTGTGTTGGAGGGCTGCGTGTTTCTCCGAATCAAGCCACACAAACAAGTGGTGGGAGAAATCCTGTCCCAGCCGCCTCACAGATCAAGTGTCACAGGCAGCCGGCCGGTATATAAACCCTGAGTGTGTCCAGCCCCGACAGATCAAATTAACCTCAGTAAAGGCAGAGACGACCAGAAAAAGCTCAAGCTCAACCAAAGGCAAAGCTGTGAAGGTTATACGGACTCTACCTCAAACCACAGCAATGGACATCCAAACGGGTCAAATAGTCCGAGCTCCGAGTCCCATGGAGAGCCTGGAGAAACAGCTGAGCTGCCCCATCTGCTTGGACATGTTCACAAAGCCGGTTGTCATTCTTCCATGCCAGCACAATCTGTGCCGCAGCTGTGCCAGTGACCTCTACGACTCCAAAAACCCATACCACTTCTCTGGAGGCATCTTCCGATGCCCTACCTGCCGATTTGAAGTGGTGCTTGACCGCCACGGTGTCTACGGTCTGCAGAGGAACCTTTTGGTGGAGAACATCATCGACATCTACAAGCAGCAGTTGGAGAAAGGAGGATCTAGGGCA
>XM_043243025.1
GTGTGTCCAGCCCCGACAGATCAAATTAACCTCAGTAAAGGCAGAGACGACCAGAAAAAGCTCAAGCTCAACCAAAGGCAAAGCTGTGAAGGTTATACGGACTCTACCTCAAACCACAGCAATGGACATCCAAACGGGTCAAATAGTCCGAGCTCCGAGTCCCATGGAGAGCCTGGAGAAACAGCTGAGCTGCCCCATCTGCTTGGACATGTTCACAAAGCCGGTTGTCATTCTTCCATGCCAGCACAATCTGTGCCGCAGCTGTGCCAGTGACCTCTACGACTCCAAAAACCCATACCACTTCTCTGGAGGCATCTTCCGATGCCCTACCTGCCGATTTGAAGTGGTGCTTGACCGCCACGGTGTCTACGGTCTGCAGAGGAACCTTTTGGTGGAGAACATCATCGACATCTACAAGCAGCAGTTGGAGAAAGGAGGTAATGCCCTAGAACCTCCTTTGAAAtccaaagaaacaaaagaacctATGTGCGAGGTACACGAAGATGAAAAAATTAACATCTACTGTGTAACCTGCCAGACACCGACTTGCTCCATGTGCAAAGTATTCGGTCAGCACAAAGACTGTGAAGTTTCCACTCTAAAAGGTGTTTATGAGGCCCAGAAGTCTGAACTTAAAAATTCAATCGACCTGCTAGGCGCCAGCAACAGCTGCTTGCAAGCAATGTTGACACAGATGGAGGAAACCTGCAAAACGGTGGAAGAAAACAGCCAAGCGCAGAAGCAGAAGTTGGGGGAGAAGTTTGACCTACTTTATGCCATCCTAGAAGACCGCAAAAGCCATCTCCTGGAGCAGATCACTCTAGAACAGGATGAGAAGGTGGCTCTGGTGAGATCGCTAATCCAGCAGTACAACGAACAGCTGCAGGCCAGCATCAAGCTGATGGACAAAGCCTCCCAGACCATGGACAACAGCAATACGGCAGAGTTCCTCATTGCTGCCAAGAAGCTGCTCACAGAAGCCAAAGATGCATCCAAGAACTCCCATCTACAGAGGCCAGAGCCCGGCTTCGAGAGTATGGACCACTTCACGCTCTTCACGGAAGACGTAGAGGCCATGCttgcaaaaatggactttggagTTGGTggagatgatgatgaggatgaagaagaggaggaggaggaagaagaagaggaagaataAAAGGGAGAAGAAAAAGGACTTAGTTGGGAAAAAGAGATGACAGTAGAAACCTTCATGATAAGGACAATAATCTAGCTGCTTTTGATAACTGTGAGACAAGGGAAGTGCAATCTTAAAGCAGTTTTAGTACAAATTGTACAAATTGCACCATTTGTAATGTCTTTTCCACTtgacttttgtacttttttattgatATGGATGTTCATATtgaattatgcttttttatattttggtagAAAATAGACGTTTATGTTTCGTTTGCAAAATTAAAGCTAGATTTATAAGCTGTAGAATACAGCTCTGCTAACTCTAGAGTGTCATGTGAGATACAAATGTTTGAATacttgaaatattaaacaatgcacTTGACTAATGAACTGTAatgtaatgttcattttcattggATAATTCAGTGGAAATAAAGGACTTGCAAAAAAgcgtca

Function

symbol description
trim63a Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm. Is expressed in several structures, including adaxial cell; cardiovascular system; musculature system; somite; and testis. Orthologous to human TRIM63 (tripartite motif containing 63).
murf1 tripartite motif-containing protein 63

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM63-like isoform X4

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64107 False 598 TUCP 0.52 2 7001115 7027427
XM_043243025.1 True 1605 mRNA 0.44 1 7025673 7027277

Neighbor

gene id symbol gene type direction distance location
st6gal2b LOC107748529,LOC107688830,LOC107559923,LOC107738307,LOC107596313,LOC107677626 coding downstream 29502 6956132 ~ 6971613 (-)
fhl2b fhl2b,LOC107688912,LOC107559916,LOC107596312,LOC105896541,LOC108437838 coding downstream 127255 6867944 ~ 6873860 (-)
tgfbrap1 tgfbrap1,LOC107748533,LOC107688833,LOC107738304,LOC107596311,LOC107660108,LOC107559914 coding downstream 134053 6854340 ~ 6867062 (-)
inpp4ab inpp4ab,LOC107566790,LOC107705620,LOC107660104,LOC107748537,LOC107688837 coding downstream 438325 6526834 ~ 6562790 (-)
LOC122347602 LOC107748539,LOC107705619,LOC107688839,LOC107566793,LOC107660103 coding downstream 502899 6491782 ~ 6498216 (-)
ackr3b ackr3b,LOC107709570,LOC107586318,LOC107688828,LOC107677631,LOC107748917,LOC107596319 coding upstream 23757 7051184 ~ 7055846 (-)
faimb faimb,LOC107709569,LOC107586372,LOC107688905,LOC107677619,LOC107562225 coding upstream 218829 7246256 ~ 7248116 (-)
slc19a2 slc19a2,LOC107586324 coding upstream 227437 7254864 ~ 7260771 (-)
psmb3 psmb3,LOC107688824,LOC102792592 coding upstream 241844 7269271 ~ 7272477 (-)
LOC122347322 zgc:162999,LOC107586326,LOC107562228,LOC107688822,LOC108438154,LOC107709582,LOC107677632,LOC107719292 coding upstream 305596 7333023 ~ 7337888 (-)
G43251 NA non-coding downstream 178094 6815260 ~ 6823021 (-)
G43161 NA non-coding downstream 517722 5995956 ~ 6483393 (-)
G43173 NA non-coding downstream 977605 6018440 ~ 6023510 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding downstream 1245651 5747766 ~ 5755464 (-)
LOC122346635 NA non-coding downstream 1253721 5745439 ~ 5747394 (-)
G43472 NA non-coding upstream 402351 7429778 ~ 7430446 (-)
G43478 NA non-coding upstream 433764 7461191 ~ 7498435 (-)
G43516 NA non-coding upstream 770697 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 829038 7856465 ~ 7857596 (-)
G43513 LOC107688815 non-coding upstream 1021970 8049397 ~ 8050678 (-)
G43248 pou3f3b,LOC107688836,LOC107559920,LOC107660107,LOC106574614 other downstream 173387 6804058 ~ 6827728 (-)
cacnb4b cacnb4b,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 other downstream 476165 6041876 ~ 6524950 (-)
G43180 nck2b,LOC107688832,LOC107748532,LOC107660111,LOC107738306 other downstream 699978 6273323 ~ 6301137 (-)
desmb desmb,LOC107566324,LOC107660100,LOC107705613,LOC107688844,LOC107566784,LOC107748575 other downstream 1034511 5958793 ~ 5966604 (-)
mylkb mylkb,LOC107688847,LOC107748549,LOC107555454,LOC107705608,LOC107566310,LOC107660138 other downstream 1264495 5723468 ~ 5736620 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other upstream 80735 7108162 ~ 7245179 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other upstream 247413 7274840 ~ 7314774 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other upstream 289520 7316947 ~ 7329565 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other upstream 552468 7579895 ~ 7586367 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other upstream 709663 7737090 ~ 7770451 (-)

Expression


Co-expression Network