nomo (nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361)


Basic Information

Item Value
gene id nomo
gene name nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7316947 ~ 7329565 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU64427
ACGTGTAGTATGTGTTTGTTCTTCTTTACAGATCAAACTTTACACTAAACAGGGCTCTCTGAAATATCAGACTGACTGTGCACCAATCAATGGTTACTTCATGATCCCTCTCTATGACAAGGGTGATTTTGTTATAAAGATAGAACCACCATCAGGATGGAGCTTTTAGCCAACAACTGTGGACCTGCATGTGGATGGAATTACAGACATCTGCACTAAAGAACAAGATATCAACTTTGTTTTTACCGGTTTTCGGTCCTCGGAACTatattaagtaaaggGCATTTGTTGGGACCTGCAGGGGTTGAAGTAAGTTTGAGAAAAGCAGGAGAAGCTGATGTCCTTCAAAGTGTCCTCACACAAGCTGGAGGCCAGTATACTTTCCTCAAGGTGCTTCCGGGAAGTTATGACATCACCGCCACTCACGCCTCATGGACCCTTGAGCAGAGCTCAACTGCTGTGGTTGTGTCAAACGAAAAACGCCCCCCGCAGCTCCTCTTGTGGTAAAGGGTTACGATGTCTCTGGAGAGGTGCAGAGTGACAGTGAACCCATGAAAGGAGTCGGCTTCCTCCTTTACTCTGCCAGCGTAACACAGGAGgatATCAGTGGCTGCAGTGTGGCCCCTGTGGATGGAGCTGTAG
>TU64428
ACTTGTGGATCGTCCCTATTACTGACCTTGTCTTCACTCAGTTCATAGCATCTGTTTCTGGCTCTGTGTCCTGTCTTGTGGCATGTGGAGATCTGACAGTCACCCTTCAGCCTGTGAGCAGACAAGGAGACAGGCAAAACCTCCAGTTGTCTGGCAGCAGTGAAACTCTCAGCTTCACTTTCAATAACGTGTTACCCGGAAAGTACAAAGTGTCTATCACCCAAGAGGAGTGGTGCTGGAAGCAGAAGTCAGTAGAGATCGATGTACTTGACTC
>XM_043241290.1
TACGCTTCACCAGCGCTGCACGATGGGTGGAATTAAGGAGCTAACGATTCTTATTTTATCTTTCCTGTACGTGACATTTGTGAATGGTACTGATGATATTTTGGTAGGCTGCGGGGGCTTTGTTAAGTCAGATGTGGAAATTAACTACTCTGTCATTGAGATCAAACTTTACACTAAACAGGGCTCTCTGAAATATCAGACTGACTGTGCACCAATCAATGGTTACTTCATGATCCCTCTCTATGACAAGGGTGATTTTGTTATAAAGATAGAACCACCATCAGGATGGAGCTTTTAGCCAACAACTGTGGACCTGCATGTGGATGGAATTACAGACATCTGCACTAAAGAACAAGATATCAACTTTGTTTTTACCGGTTCGGTCCTCGGAACTatattaagtaaaggGCATTTGTTGGGACCTGCAGGGGTTGAAGTAAGTTTGAGAAAAGCAGGAGAAGCTGATGTCCTTCAAAGTGTCCTCACACAAGCTGGAGGCCAGTATACTTTCCTCAAGGTGCTTCCGGGAAGTTATGACATCACCGCCACTCACGCCTCATGGACCCTTGAGCAGAGCTCAACTGCTGTGGTTGTGTCAAGAAAAACGCCCCCCGCAGCTCCTCTTGTGGTAAAGGGTTACGATGTCTCTGGAGAGGTGCAGAGTGACAGTGAACCCATGAAAGGAGTCGGCTTCCTCCTTTACTCTGCCAGCGTAACACAGGAGgatATCAGTGGCTGCAGTGTGGCCCCTGTGGATGGAGCTGTAGTCATAGTGACCGcgcttgtgtttttgtgcagttcCCAGTCTCGTGAGGATGGTACTTTCTTTCCCTGCCTTCCCAGTGGCGAATATACAGTGGTCCCATATTACAGAGGGGAGAGAATCACATTCGATGTTGCTCCTTCTCGCATGGATTTCAAAGTAGAACACAGCAGTTTAACGTTGGAGCCAATATTTCGTGTCATGGGATTCTCTGTGATGGGCAGAGTTCTGAATAGCCCCAATGGAGAAGGTGTCGCAGATGCTGTAGTAACACTTAACAACCAAATTACAGTGGAAACTAAAGACGATGGTTCTCTCAGATTGGAAAATATGACCACAGGCACTTATACTATTAACACGCACAAGGAGCTGATGTTTGAGCCAGTCACTGTGAAGATTGCTCCCAGCACCCCTCAGCTGCCAGACATCATCACTGCAGGGTGAGTATCGCAGTGTGGTCACATCTCAGTCACCTGCCTTCCTGAAACCGTTAAACAGCTTGGGCACTACAGAGTTAGTCTCGATCAGAGACAGGATCAGGGCTTTTTCCGTACTGTTGAAAGTGACAGCCACGGAGTGTTCTGCTCTGTTAAACCAGGAGACTACAGCGTGCTCAGTGATTTGCACATTCatttagatgttttgttttatacaggTGACCCTCCTGAAAGTGATGTGAAGGCTGGACTTGCTCTTCAGCCGCACTTCTCGATATCTCACTTGTGGATCGTCCCTATTACTGACCTTGTCTTCACTCAGTTCATAGCATCTGTTTCTGGCTCTGTGTCCTGTCTTGTGGCATGTGGAGATCTGACAGTCACCCTTCAGCCTGTGAGCAGACAAGGAGACAGGCAAAACCTCCAGTTGTCTGGCAGCAGTGAAACTCTCAGCTTCACTTTCAATAACGTGTTACCCGGAAAGTACAAAGTGTCTATCACCCAAGAGGAGTGGTGCTGGAAGCAGAAGTCAGTAGAGATCGATGTACTTGACTCAAATGCGGAGGGAGTGGAGTTCAGACAAACTGGATACTTGCTTCGCTGCTCACTGTCCCATGCTATAACCCTGGATTTTTCTGAAGATGGCAGCTCACCAGAGAACGTTGGCATTTACAATCTGTCCAAAGGAGTCAATCGCTTTCTGCttttaatcgAAGGTGTTTATAAAGTGACTCCACGCTCCTGTCACCAATTCGAACAAGATTACTACACCTACAACACGTCTGCCCCAAGCATCTTAACCCTAACTGCTGTGAGACACCACATGACAGGACTTATCACCACTGATAAGATGCTGGATGTCACTGTCACCATCAAATCTTCCATTGAGAGTGAGCCTGCTTTGGTTCTGGGGCCCCTGCGCTCAAATGAGGAGCAGCTGGAGCAGCAGCTTCTGGAAATAGCTTCCCGTAAGAAGGAGAGGGAAGAAAGAGGAGAAGAACAGCCCCCTGTGGAAGAGAAACCGGATGAACTCCATGAGCCTTTCCACTATGAATTCTCATACTGGGCACGGTATGGGGAGAAGATCACAGTCACACCTTCATCCAAAGAATTTCTGTTTTACCCTCCTGAAGTAGAGGCTACAATCACTGGAGAACTGCCCGGTCAGATGGTGGAGATCGCAGGCGCAGCAGGACTGTTCCTCACGGGGAGTGTGTCACCTACACTGGAGGGTGTGGAAATCTCCATTAAGGAGAAAGGAGCCGCAAACCCTCTCATTACAGTCCTCACCGATGAAGCCGGAACCTACAGGTCAGTGTGGACCCTACATAGTGACTCTCTGTATGACATCAGTGCCAGTAAAGAGGGCTTTGTCCTGACTGCAGTGGAGGGAAGCACAGGAGACTTCAAGGTTGCCCTCGCAGGAGTCACTTTTGAGGTCAGCAGCAGATGGATGTGTCCTCTCTCTGGGGTTCTGCTGTCTCTCAGGGGCCACTTCCGCTCAAACATGCTCACTCAAGACACTGGCCTTCTCACCTTCAACAACCTGAGTCCTGGCCAGTACTATTTCAAGCCCATGATGAAGGAGTTCCGCTGGAGCTCAGCACAAATGATTACAGTAGAAGAAGGACAGGTCCTCCATATTCCCATCGCTGGCTTCAAAACAGCTTATAGCTGCTATGGAACAGTGCAGTTAGGAGGCGATGCGAGCAGGGGTCGCCAGGAGGCAGTGGGCAAAGAGTGTGGCATGTACAGTGAGGACACGGTCACTGATGAAGAGGGACGCTTTAGACTCAGAGGCTTTCTGCCAGCCTGTAACTACAACATTCAGCTGAGAGGAGAAGGAAACGATCACATCGAGAGAGCTTACCGCCACCAAACCATTGACGTGGGAAACACCGATATTGAAGGAGTAAACATAATCGCCTTCAGACAGATCAACCAGTTTGACCTGAGTGGAAATGTCATCACTTCTCCTGAGCCTCCGACTCTCTGGGTGAAGCTCTACAAGAGTGACAACCTCACAATCCCTTCCAGAGCGTGTCTCTTGGCCAGTCCCTTGTTCTTCCACTTTTCCTGCCACGTGATGGAGAGCTATGTCTTGATGCTACACACGCCACTCTCTCGCTCCCAGTATGACTTCAAACTCCCACAAGCTGTCACGCCTTCTGCTTACCACAAACATGTAACACTAACCTTTAACCCCAAGAGGAAAATACCAGATCAGGATGTTGCCCAGGATCTTTCTATCGCCTCTACCGCCACATTACTTCTATTGCTTGCCGCCTATAATCACGAGCGGGTGATCCCACTGCTTCTGCAGCTGGTCAGCCAGACAGGAGTTCGAGGACTTGCTCAGGCCGGCGGGGAAGGAATCTCAGTGGACAGAAGCCAAACGCCACAAAAAAGGCCAAAAACAAGACGTACATGA

Function

symbol description
nomo Predicted to enable carbohydrate binding activity. Involved in negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry. Acts upstream of or within regulation of signal transduction. Located in endoplasmic reticulum membrane. Is expressed in several structures, including heart; liver; mesoderm; nervous system; and pleuroperitoneal region. Orthologous to human NOMO1 (NODAL modulator 1); NOMO2 (NODAL modulator 2); and NOMO3 (NODAL modulator 3).

NR:

description
nodal modulator 1-like

GO:

id name namespace
GO:1900176 negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64427 False 642 lncRNA 0.47 7 7324770 7329008
TU64428 False 274 lncRNA 0.48 3 7321889 7322842
XM_043241290.1 True 3631 mRNA 0.49 54 7316947 7329565

Neighbor

gene id symbol gene type direction distance location
psmb3 psmb3,LOC107688824,LOC102792592 coding downstream 44470 7269271 ~ 7272477 (-)
slc19a2 slc19a2,LOC107586324 coding downstream 56176 7254864 ~ 7260771 (-)
faimb faimb,LOC107709569,LOC107586372,LOC107688905,LOC107677619,LOC107562225 coding downstream 68831 7246256 ~ 7248116 (-)
ackr3b ackr3b,LOC107709570,LOC107586318,LOC107688828,LOC107677631,LOC107748917,LOC107596319 coding downstream 261101 7051184 ~ 7055846 (-)
mlpha mlpha,mlph,LOC107748571,LOC107586370,LOC107688909,LOC107596317,LOC107677617 coding downstream 297032 7010883 ~ 7019915 (-)
LOC122347322 zgc:162999,LOC107586326,LOC107562228,LOC107688822,LOC108438154,LOC107709582,LOC107677632,LOC107719292 coding upstream 3458 7333023 ~ 7337888 (-)
col18a1b LOC107709584,LOC107586328,LOC107688819 coding upstream 26783 7356348 ~ 7382805 (-)
LOC122346455 tns1a,LOC107688818,LOC107709585,LOC107562221,LOC107663075,LOC107586330,LOC107719294 coding upstream 56154 7385719 ~ 7388299 (-)
tns1a tns1a,LOC107688818,LOC107709585,LOC107663075,LOC107719294,LOC107586330 coding upstream 278908 7608473 ~ 7659200 (-)
LOC122347094 tns1a,LOC107688818,LOC107709585,LOC107719294,LOC107562221,LOC107663075 coding upstream 331899 7661464 ~ 7695119 (-)
G43251 NA non-coding downstream 493926 6815260 ~ 6823021 (-)
G43161 NA non-coding downstream 833554 5995956 ~ 6483393 (-)
G43173 NA non-coding downstream 1293437 6018440 ~ 6023510 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding downstream 1561483 5747766 ~ 5755464 (-)
LOC122346635 NA non-coding downstream 1569553 5745439 ~ 5747394 (-)
G43472 NA non-coding upstream 100213 7429778 ~ 7430446 (-)
G43478 NA non-coding upstream 131626 7461191 ~ 7498435 (-)
G43516 NA non-coding upstream 468559 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 526900 7856465 ~ 7857596 (-)
G43513 LOC107688815 non-coding upstream 719832 8049397 ~ 8050678 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 2173 7274840 ~ 7314774 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other downstream 71768 7108162 ~ 7245179 (-)
trim63a trim63a,murf1,LOC107586317,LOC105896535 other downstream 289520 7001115 ~ 7027427 (-)
G43248 pou3f3b,LOC107688836,LOC107559920,LOC107660107,LOC106574614 other downstream 489219 6804058 ~ 6827728 (-)
cacnb4b cacnb4b,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 other downstream 791997 6041876 ~ 6524950 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other upstream 250330 7579895 ~ 7586367 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other upstream 407525 7737090 ~ 7770451 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other upstream 717537 8047102 ~ 8048008 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 1379141 8708706 ~ 8713858 (-)
G43890 NA other upstream 1931051 9260616 ~ 9261245 (-)

Expression


Co-expression Network