LOC122346476 (cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160)


Basic Information

Item Value
gene id LOC122346476
gene name cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7737090 ~ 7770451 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU64486
AAGGTGAAAAAAAGAGTGTTGCAATGATCCTCCGAAGCAACGAACAGATCCGCCACACAGAGTTACTGTAAATGCCAAACAATTCCAGAACAAAAAGAGGATCCGAAGAGCTTTCTTTTTAAGtTTCCTGGAGCTACACAGTTGATTCCAATGGAAAATGCCAGGAAATCCCTTGATGTGTTCTCAACTTCCCTTTCAAAATGCATATCAGCCTGTGGTTCTATGACACAGCAGCTCTTACCACGTTGGCCTCAGCACTCCAGACCCTTCAGGGTCATCAACTCTGACCGCTCTATTAAGAAAGGCATCATGGCAAATGACCTGAGGACCTAAAGAACAAGGTGATTGATATATTCCACATGCATTGCATGAGGGCTTTAGTGTTGGATGAGGATGGAACTGGAGTGGATACGGAGGACTTTTTTCAAACCTTAAAAGACAACACTGTCCTAATGGTCTTAGGGGAAGGACAGAAGTGGGCTCCACAGCAGaaacACCTTCGGATCAGAAGAAAGTAGGAAGGAAACAATCAACCAAGAGCTATCCTGGATGTGGctggaaaaaaacaaggaaagatGTTGCCAAACTGACTTTTGATCTTTACAAAAATCACCCGCAGGACTTTATTGGCTGCCTGAACGTGCAGGCGACACTGTATGGAATGTATTCTGTGTCGTACGACTTGCAGTGCTACAAGGCGAAAAGAATGCTACGGGAAGCTCTAAGATGGACTCTCTTCACTATGCAGACTACTGGCCATGTTTTAGTAGGAACCTCGTGTTATATTCAGCATCTCATCGATGAGGATGAGAAGACAGATGCACATCTGATATCTCCTGCATGCATCATCAAGGAGTTACATCATTAAACCACGGCTAGGGCAAACTGACAAGAGTGCACCGCTTGTTGatttaatgctttataaaatgtgtatttaaatgagtTATTATTAACGTCTATGTAAACAGCTAAATATGCAGTTAacaatgtttgcaaaaaaaaaaatgtttaacgtTATTTATcctcacaaaaatgtaaacgcGGCTCTTCCATGTGAGAGGTTACACCACTCTTGAATTTTCAATTACACAAACACGTCTAGGGGGACGCAAGGTTACATGTGGTTTGCCACTGAAAGGAAGAACAGCTGTCCTTCCTGTCTCCCTTAGGCATCTTACAGTACGGATATTGCAGTTTATTGCTCTGGCCACATCTGAGTCAGCGGGCCTCTTTAATGTCTATGGTTTGATGTataaaaagtgtgaaaatattgactaaattatctttaaaatacattattctgAAAAGGGACCATTCTGTCTTTCCTTTTGATTACATGttacagatagacagagagatggatagatggatagatagatggatagatggatagatggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatacttatttttttaataaag
>TU64487
AAGGTGAAAAAAAGAGTGTTGCAATGATCCTCCGAAGCAACGAACAGATCCGCCACACAGAGTTACTGTAAATGCCAAACAATTCCAGAACAAAAAGAGGATCCGAAGAGCTTTCTTTTTAAGtTTCCTGGAGCTACACAGTTGATTCCAATGGAAAATGCCAGGAAATCCCTTGATGTGTTCTCAACTTCCCTTTCAAAATGCATATCAGCCTGTGGTTCTATGACACAGCAGCTCTTACCACGTTGGCCTCAGCACTCCAGACCCTTCAGGGTCATCAACTCTGACCGCTCTATTAAGAAAGGCATCATGGCAAATGACCTGAGGACCTAAAGAACAAGGTGATTGATATATTCCACATGCATTGCATGAGGGCTTTAGTGTTGGATGAGGATGGAACTGGAGTGGATACGGAGGACTTTTTTCAAACCTTAAAAGACAACACTGTCCTAATGGTCTTAGGGGAAGGACAGAAGTGGGCTCCACAGCAGaaacACCTTCGGATCAGAAGAAAGTAGGAAGGAAACAATCAACCAAGAGCTATCCTGGATGTGGctggaaaaaaacaaggaaagatGTTGCCAAACTGACTTTTGATCTTTACAAAAATCACCCGCAGGACTTTATTGGCTGCCTGAACGTGCAGGCGACACTGTATGGAATGTATTCTGTGTCGTACGACTTGCAGTGCTACAAGGCGAAAAGAATGCTACGGGAAGCTCTAAGATGGACTCTCTTCACTATGCAGACTACTGGCCATGTTTTAGTAGGAACCTCGTGTTATATTCAGCATCTCATCGATGAGGATGAGAAGACAGATGCACATCTGATATCTCCTGCATGCATCATCAAGGAGTTACATCATTAAACCACGGCTAGGGCAAACTGACAAGAGTGCACCGCTTGTTGatttaatgctttataaaatgtgtatttaaatgagtTATTATTAACGTCTATGTAAACAGCTAAATATGCAGTTAacaatgtttgcaaaaaaaaaaatgtttaacgtTATTTATcctcacaaaaatgtaaacgcGGCTCTTCCATGTGAGAGGTTACACCACTCTTGAATTTTCAATTACACAAACACGTCTAGGGGGACGCAAGGTTACATGTGGTTTGCCACTGAAAGGAAGAACAGCTGTCCTTCCTGTCTCCCTTAGGCATCTTACAGTACGGATATTGCAGTTTATTGCTCTGGCCACATCTGAGTCAGCGGGCCTCTTTAATGTCTATGGTTTGATGTataaaaagtgtgaaaatattgactaaattatctttaaaatacattattctgAAAAGGGACaaaaaaaaaaaaaaaaaaaaaa
>TU64489
AAGGTGAAAAAAAGAGTGTTGCAATGATCCTCCGAAGCAACGAACAGATCCGCCACACAGAGTTACTGTAAATGCCAAACAATTCCAGAACAAAAAGAGGATCCGAAGAGCTTTCTTTTTAAGtTTCCTGGAGCTACACAGTTGATTCCAATGGAAAATGCCAGGAAATCCCTTGATGTGTTCTCAACTTCCCTTTCAAAATGCATATCAGCCTGTGGTTCTATGACACAGCAGCTCTTACCACGTTGGCCTCAGCACTCCAGACCCTTCAGGGTCATCAACTCTGACCGCTCTATTAAGAAAGGCATCATGGCAAATGACCTGAGGACCTAAAGAACAAGGTGATTGATATATTCCACATGCATTGCATGAGGGCTTTAGTGTTGGATGAGGATGGAACTGGAGTGGATACGGAGGACTTTTTTCAAACCTTAAAAGACAACACTGTCCTAATGGTCTTAGGGGAAGGACAGAAGTGGGCTCCACAGCAGaaacACCTTCGGATCAGAAGAAAGTAGGAAGGGTGAGTGTGAACAATCAAATGAACCTCCTTAAAGCATATCTGAtgtcaagtttttttattatcatttctcTCCTACATTGCGTCTCTAGGAGTACAAAACATACAGCCTCTTTCAAAAGCCTACAGTTGTTAGATTACTTGCTCTGTCTTGTCTtctaagaaacatttttaaaggtcaCGGTACCTTGTAAGCAGTCAATCCGGAACGCTCTACATAGGCAGCATCAGTCAGGTGACCTTTACATGTTCCTAGGCAACCAACCTGTGCTCTTCAGGATTAGACCTAGGCTTTCACATCAAACTTCAGGCAGGGCATGGATATAACACTGTATGCTAAATGTTTGATTCTACACCAgctcaaaagtgaaaatcaATAGCAG
>XM_043241119.1
AAATACTCATGCTGTCAGAGTGGAACAAAGGTGAAAAAAAGAGTGTTGCAATGATCCTCCGAAGCAACGAACAGATCCGCCACACAGAGTTACTGTAAATGCCAAACAATTCCAGAACAAAAAGAGGATCCGAAGAGCTTTCTTTTTAAGtTTCCTGGAGCTACACAGTTGATTCCAATGGAAAATGCCAGGAAATCCCTTGATGTGTTCTCAACTTCCCTTTCAAAATGCATATCAGCCTGTGGTTCTATGACACAGCAGCTCTTACCACGTTGGCCTCAGCACTCCAGACCCTTCAGGGTCATCAACTCTGACCGCTCTATTAAGAAAGGCATCATGGCAAATGCTGAGGACCTAAAGAACAAGGTGATTGATATATTCCACATGCATTGCATGAGGGCTTTAGTGTTGGATGAGGATGGAACTGGAGTGGATACGGAGGACTTTTTTCAAACCTTAAAAGACAACACTGTCCTAATGGTCTTAGGGGAAGGACAGAAGTGGGCTCCACAGCAGGTCAaaacACCTTCGGATCAGAAGAAAGTAGGAAGGAAACAATCAACCAAGAGCTATCCTGGATGTGGctggaaaaaaacaaggaaagatGTTGCCAAACTGACTTTTGATCTTTACAAAAATCACCCGCAGGACTTTATTGGCTGCCTGAACGTGCAGGCGACACTGTATGGAATGTATTCTGTGTCGTACGACTTGCAGTGCTACAAGGCGAAAAGAATGCTACGGGAAGCTCTAAGATGGACTCTCTTCACTATGCAGACTACTGGCCATGTTTTAGTAGGAACCTCGTGTTATATTCAGCATCTCATCGATGAGGATGAGAAGACAGATGCACATCTGATATCTCCTGCATGCATCATCAAGGAGTTACATCATTAAACCACGGCTAGGGCAAACTGACAAGAGTGCACCGCTTGTTGatttaatgctttataaaatgtgtatttaaatgagtTATTATTAACGTCTATGTAAACAGCTAAATATGCAGTTAacaatgtttgcaaaaaaaaaaatgtttaacgtTATTTATcctcacaaaaatgtaaacgcGGCTCTTCCATGTGAGAGGTTACACCACTCTTGAATTTTCAATTACACAAACACGTCTAGGGGGACGCAAGGTTACATGTGGTTTGCCACTGAAAGGAAGAACAGCTGTCCTTCCTGTCTCCCTTAGGCATCTTACAGTACGGATATTGCAGTTTATTGCTCTGGCCACATCTGAGTCAGCGGGCCTCTTTAATGTCTATGGTTTGATGTataaaaagtgtgaaaatattgactaaattatctttaaaatacattattctgAAAAGGGA

Function

symbol description
cidec Predicted to be involved in regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 5. Orthologous to human CIDEC (cell death inducing DFFA like effector c).

NR:

description
PREDICTED: cell death activator CIDE-3-like

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0005811 lipid droplet cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64486 True 1490 lncRNA 0.40 8 7765537 7770424
TU64487 False 1334 lncRNA 0.41 8 7737090 7770424
TU64489 False 903 lncRNA 0.43 5 7768025 7770424
XM_043241119.1 False 1340 mRNA 0.42 8 7765740 7770451

Neighbor

gene id symbol gene type direction distance location
LOC122346795 igfbp2,igfbp2a,LOC107688817,LOC107731775,LOC107719297,LOC107663074,LOC108438161 coding downstream 4766 7725403 ~ 7732324 (-)
LOC122347094 tns1a,LOC107688818,LOC107709585,LOC107719294,LOC107562221,LOC107663075 coding downstream 41971 7661464 ~ 7695119 (-)
tns1a tns1a,LOC107688818,LOC107709585,LOC107663075,LOC107719294,LOC107586330 coding downstream 77890 7608473 ~ 7659200 (-)
LOC122346455 tns1a,LOC107688818,LOC107709585,LOC107562221,LOC107663075,LOC107586330,LOC107719294 coding downstream 348791 7385719 ~ 7388299 (-)
col18a1b LOC107709584,LOC107586328,LOC107688819 coding downstream 354285 7356348 ~ 7382805 (-)
LOC122347101 igfbp2,igfbp2a,LOC107731775,LOC107688817,LOC107719297,LOC107663074,LOC108438161 coding upstream 195297 7965748 ~ 7980089 (-)
inha inha,LOC107731770,LOC107688903,LOC107719299,LOC107694906,LOC107569459,LOC107586362 coding upstream 242674 8013125 ~ 8015759 (-)
cacng1a cacng1a,cacng1,LOC107586374,LOC107688902,LOC107716892,LOC107569457 coding upstream 412564 8183015 ~ 8188384 (-)
cacng4a LOC107688901,LOC107586376,LOC107716888 coding upstream 428660 8199111 ~ 8202841 (-)
psmd12 psmd12,LOC107688808,LOC107694910 coding upstream 432528 8202979 ~ 8206792 (-)
G43478 NA non-coding downstream 238655 7461191 ~ 7498435 (-)
G43472 NA non-coding downstream 306644 7429778 ~ 7430446 (-)
G43251 NA non-coding downstream 914069 6815260 ~ 6823021 (-)
G43161 NA non-coding downstream 1253697 5995956 ~ 6483393 (-)
G43516 NA non-coding upstream 27673 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 86014 7856465 ~ 7857596 (-)
G43513 LOC107688815 non-coding upstream 278946 8049397 ~ 8050678 (-)
G43660 NA non-coding upstream 412228 8182679 ~ 8182882 (-)
G43691 NA non-coding upstream 523603 8294054 ~ 8294286 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 150723 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 407525 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 422316 7274840 ~ 7314774 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other downstream 491911 7108162 ~ 7245179 (-)
trim63a trim63a,murf1,LOC107586317,LOC105896535 other downstream 709663 7001115 ~ 7027427 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other upstream 276651 8047102 ~ 8048008 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 938255 8708706 ~ 8713858 (-)
G43890 NA other upstream 1490165 9260616 ~ 9261245 (-)
G43896 NA other upstream 1495551 9266002 ~ 9267324 (-)
G43899 NA other upstream 1498737 9269188 ~ 9270922 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031995 cidec coding NC_007117.7 CM002890.2 21202639 ~ 21212367 (+)