G43513 (LOC107688815)


Basic Information

Item Value
gene id G43513
gene name LOC107688815
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8049397 ~ 8050678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU64509
CacgtaaatatatatagtttttgttgttgttttcgtttttagttttttacaaaaactataGCAAAAAGATCTATAATGAAACATTGTATTGAAAGACATGCCAAACAGAGTGCGATATACAgagtttgaaatataaaatcaaatgtaaaagtacATCAACCAGATTTACAAAGTAATAGTGACATAATGAGCAGAAAAAGGAGCATTTATATCCTTGGATtgaaaaacttttataaataaaatttgaaaagttGGAACACCAAAGCTTAATATGTTTCCAAACTTTAATGAAGCATAACTGTTTTACACTgttttatctataaatatatattaaaaatattcaaaacactgacaaattagcattttacaCTGCAGacaagtttgtttattttaagaattctcaaaagaaaataatctgTTTCAGTGAAATGTAGAAAACAGTATTGTATTCTTCTTCATGAACAGGCACTATTACTGTtcatatttaatttaaatccaAATGGATGCATCACATAgcaaactacattaaaaaaaaaacaaaatgatgtcAGCACTGATAGTTTCGTGGGCAGCAAGCCGACATGATGTCCCAAGTTTGAGTCCTGGTCACAGACGTTTCCCAATCCTGTCCCCATCTATATCTCCCACTTGCTTCATGTCAGAATCTACACTGCCCTATCAAAAAAGGCAAACatgccaaaaagaaaaaaaaattacaatgctttataaaaacattcatcctGGTACAATTGCTGATCCAGTTAACTGAATCCAGTATTGCTCCTAAGGTAATGTCCATCACCTTGAAACAACTGTTACTTGTCTACAGCTATCAACCAACTTTTCTATTATTAACATCATTGACAAATAgtcaatgtgttttttgtgagaTCTATTCTGTTCTTATATTACTGCTGTCTTCAAGGACACCCCTGGGTACAATTTCCAGCAAACATTTTCCAGCTCTTAAGGCATACCTTATCTTGTTCAAAGTCaatgtttttcttcactgaaagGTGTACTTGCTGAACTAGGATTGGTTAATGAAGCCGGGGATGAAGATCCACTCTGGTAGACTCTCAGGAGGACCTTGTGTTTAGTAGCTGACTCTGCACATCTGTGCTGATGGTCCTCCAGGAATTCTTTGAGACGTGTGGTAGTGAAAGTCAAGGTCTGTCGGCGCAGCTTCTTTAGATATGAGTCATGAAGCCATGAATGATTGAGGCAGTCCTTAATGGTGGGTCGACA

Function

NR:

description
PREDICTED: striated muscle preferentially expressed protein kinase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64509 True 1248 lncRNA 0.35 2 8049397 8050678

Neighbor

gene id symbol gene type direction distance location
inha inha,LOC107731770,LOC107688903,LOC107719299,LOC107694906,LOC107569459,LOC107586362 coding downstream 33638 8013125 ~ 8015759 (-)
LOC122347101 igfbp2,igfbp2a,LOC107731775,LOC107688817,LOC107719297,LOC107663074,LOC108438161 coding downstream 69308 7965748 ~ 7980089 (-)
LOC122346795 igfbp2,igfbp2a,LOC107688817,LOC107731775,LOC107719297,LOC107663074,LOC108438161 coding downstream 317073 7725403 ~ 7732324 (-)
LOC122347094 tns1a,LOC107688818,LOC107709585,LOC107719294,LOC107562221,LOC107663075 coding downstream 354278 7661464 ~ 7695119 (-)
tns1a tns1a,LOC107688818,LOC107709585,LOC107663075,LOC107719294,LOC107586330 coding downstream 390197 7608473 ~ 7659200 (-)
cacng1a cacng1a,cacng1,LOC107586374,LOC107688902,LOC107716892,LOC107569457 coding upstream 132337 8183015 ~ 8188384 (-)
cacng4a LOC107688901,LOC107586376,LOC107716888 coding upstream 148433 8199111 ~ 8202841 (-)
psmd12 psmd12,LOC107688808,LOC107694910 coding upstream 152301 8202979 ~ 8206792 (-)
c6h22orf23 LOC107716895,LOC107586342,LOC107688809 coding upstream 176746 8227424 ~ 8232954 (-)
ppp1r12c ppp1r12c,LOC107688807,LOC107586341,LOC107710164,LOC107569470 coding upstream 183057 8233735 ~ 8246233 (-)
G43528 NA non-coding downstream 191801 7856465 ~ 7857596 (-)
G43516 NA non-coding downstream 249700 7798124 ~ 7799697 (-)
G43478 NA non-coding downstream 550962 7461191 ~ 7498435 (-)
G43472 NA non-coding downstream 618951 7429778 ~ 7430446 (-)
G43251 NA non-coding downstream 1226376 6815260 ~ 6823021 (-)
G43660 NA non-coding upstream 132001 8182679 ~ 8182882 (-)
G43691 NA non-coding upstream 243376 8294054 ~ 8294286 (-)
G43697 NA non-coding upstream 263745 8314423 ~ 8314623 (-)
G43700 NA non-coding upstream 283684 8334362 ~ 8343514 (-)
G43709 NA non-coding upstream 398460 8449138 ~ 8450686 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 1389 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 278946 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 463030 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 719832 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 734623 7274840 ~ 7314774 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 658028 8708706 ~ 8713858 (-)
G43890 NA other upstream 1209938 9260616 ~ 9261245 (-)
G43896 NA other upstream 1215324 9266002 ~ 9267324 (-)
G43899 NA other upstream 1218510 9269188 ~ 9270922 (-)
G43900 NA other upstream 1220740 9271418 ~ 9272305 (-)

Expression


Co-expression Network