G43801 (pick1,LOC107734822,LOC107734770,LOC107572282)


Basic Information

Item Value
gene id G43801
gene name pick1,LOC107734822,LOC107734770,LOC107572282
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8708706 ~ 8713858 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU64905
AGAAGAAGAACGCGTCCAGCAGACCGCCGTTCAGATGCAGCTGCTCAATGTCTACCgaataaacacaacatgcagaCTTTATCTTAACATGTTCATGTGTTGAGAGCATCTTTACGCTTCAGCTGCTCGTCGACCGACCGTCACAGGGTTCAGAGCCGATAATGTTCACGGACATGGACTACGAGCTGGAGGAGGACAAACTAGGGATTCCCACGGTTCCCGGGACGGTGACCCTGAAGAAGGACTCGCAGAACCTGATCGGGATCAGCATCGGCGGAGGAGCTCAGTTCTGTCCCTGTCTCTACATCGTCCAGgtgtttgATAACACTCCTGCCTCTCTGGACGGGACTCTGGCCGCCGGTGACGAGATCACGGGAGTCAACGGCAAACCGGTGAAAGGAAAGACTAAAGTGGAGGTGGCCAAGATGATCCAGGCGGTGCAGGGGGAAGTCGTGATCCAGTACAACAAACTGCAGGCCGACCCCAAGCAGGGCAAGTCTCTGGATATCGATGGTCTGGTGAAGAGgctggaggagctggagaagACCGCTGAGCTTTATAAAGGGCTGATGGAGCACACCAAGAGAACTGCTACGAGCTTTCTCGAGCTCTCGCAGACCCACAGAGCGTTTGGCGACGTGTTTTCCGTCATCGGG
>TU64907
GAAACATGGAGAAGTTCGGCATCCAGCTGCTGAAGACCATCAAACCCATGCTGCATGATCTCAACACGTATCTACACAAAGCCATTCCCGACACCAAGCTCACCATCCGCAAATACCTGGACGCGTCAAGTTTGAGTACTTGtcgTACTGTCTGAAGGTGAAGGAGATGGACGACGAAGAGTACAGCTGTATCgcgtTGGGTGACCCGCTGTACCGCGTCAGCACCGGGAACTACGAGTACCGCTTGATCCTGCGCTGTCGACAGGAAGCCCGCGCGCGCTTCGCCAAGATGCGCAAAGACGTCCTGGAGAAGATCGAACTCCTGGACCAGAAACATGTCCAGGACATTGTGTTCCAGCTGCAGCGCTTACGCTCGGGGATGTCGCACTATTACGGCGACTCGCTACGTGCTGAAAGAGGCTGACGTGTTCCCCATCGAGGTGGATCTGTCCCGGACCATGATCAGCTACGGCGGGCAGAGTCTCctacgaggaggaggaggaggaggacgagaaGACACGGGCCGAGGAGGAGAAGACGGAGCTCCGCAGACTGAGAACGGAGCCGAGAAACTCATCGACGACCAGTGAATTATCAGATGAAATAAGAAATCAATGAAGGATGAGAGAGTATGTTCAGGAAGTAGGATGATcgacaaatacaaataaaagcattatatattacatatttatatatatgatatttaatatagCAAATTCTTTATTGATAAACTACACATTCAAATGACTGGGCAGACAGGAAGTGAATAGCTGGTTGCCGTGTTACATACTTTAGAATAGAATGTTACTTTGGTTACTATGGTAACAGAATTCAAAATTTCAGACAAACATTCTTTATTTGAAGTCTtggcactttttttgtttttcataacaTTTCAAACGAAGGGAC

Function

symbol description
pick1 Predicted to enable phospholipid binding activity and protein kinase C binding activity. Predicted to be involved in several processes, including dendritic spine maintenance; positive regulation of receptor internalization; and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in several cellular components, including cytoskeleton; perinuclear region of cytoplasm; and synapse. Predicted to be active in several cellular components, including cytoplasmic vesicle; postsynaptic density; and trans-Golgi network membrane. Orthologous to human PICK1 (protein interacting with PRKCA 1).

NR:

description
PRKCA-binding protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64905 False 656 TUCP 0.55 8 8712021 8713858
TU64907 True 909 TUCP 0.47 5 8708706 8711960

Neighbor

gene id symbol gene type direction distance location
si:dkey-45d16.4 si:dkey-45d16.4,LOC107681484,LOC107569613,LOC107711600,LOC108424794,LOC103024355,LOC108273264 coding downstream 159467 8547278 ~ 8549239 (-)
LOC122346602 NA coding downstream 183713 8506768 ~ 8524993 (-)
nprl2 nprl2 coding downstream 207438 8496635 ~ 8501268 (-)
gga1 gga1,LOC107712552,LOC107656124,LOC107586353,LOC107710174,LOC107691488 coding downstream 228870 8466738 ~ 8479836 (-)
cfap100 cfap100,LOC107562886,LOC107691496 coding downstream 269321 8431444 ~ 8439385 (-)
ube2o ube2o,LOC100331775 coding upstream 143676 8857534 ~ 8883164 (-)
LOC122347059 rhbdf2 coding upstream 172650 8886508 ~ 8932433 (-)
acox1 acox1 coding upstream 219225 8933083 ~ 8951173 (-)
evpla evpl,LOC107742557 coding upstream 241398 8955256 ~ 8967380 (-)
srp68 srp68 coding upstream 257816 8971674 ~ 8995633 (-)
G43800 NA non-coding downstream 732 8706786 ~ 8707974 (-)
G43739 NA non-coding downstream 162143 8546353 ~ 8546563 (-)
G43734 NA non-coding downstream 212073 8495764 ~ 8496633 (-)
G43719 LOC108424762,LOC107710154,LOC107562891,LOC556764 non-coding downstream 242060 8460906 ~ 8466646 (-)
G43710 NA non-coding downstream 253843 8454131 ~ 8454863 (-)
G43855 NA non-coding upstream 308661 9022519 ~ 9022881 (-)
G43856 NA non-coding upstream 311350 9025208 ~ 9025429 (-)
G43881 NA non-coding upstream 536841 9250699 ~ 9251679 (-)
G43880 NA non-coding upstream 538128 9251986 ~ 9253068 (-)
G43884 NA non-coding upstream 541868 9255726 ~ 9256009 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 660698 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 938255 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 1122339 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 1379141 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 1393932 7274840 ~ 7314774 (-)
G43890 NA other upstream 546758 9260616 ~ 9261245 (-)
G43896 NA other upstream 552144 9266002 ~ 9267324 (-)
G43899 NA other upstream 555330 9269188 ~ 9270922 (-)
G43900 NA other upstream 557560 9271418 ~ 9272305 (-)
anapc11 anapc11,LOC107553313 other upstream 1231809 9945667 ~ 9948988 (-)

Expression


Co-expression Network