G43880


Basic Information

Item Value
gene id G43880
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9251986 ~ 9253068 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU65008
gtttacttgaaaaatatgccaCCGGTCTCAGCTTTCCCCCGTGatcctgtaacagaacagaagacatgaaaccatttttctcatcaactgtttgtacaaaatttctctcagggtctggaagtcccagacttggggatgtctgtaacaacattttcaacctttcaaatgctttctctgcttcaggagTCCAGGTCAGTTTGTCATGTGGCTGCAACCTTCTTCCGTGAGCCAAAGCGCTCAAAGGTGACTCTTCAATGGCAtagttgggaataaatgttctacaatatgaacacattcccaaaaatgacatgagctgtttttttgtcagaggctttggaatcttttgaattgcctctattctcttttgtgttagagattttccctgcttgttgataatgtgacctagaaacgtcacctccctttttgcaaactgcaactttgacaaactgaccttgtggccttcagcagccaaatgtttcaacagctttacagtgtcctgtgtacaagtttcttcatctctggctgttattaagagatcatcgacatattgaattaaagctgaccctggtgccaattgtaatgtttccaaacttCTCTTCAGTGCCTCGCCGAACAATACAGGCGAATTTTTGAATCCTTGACAAAGTCGAGTAAAAGTGTAAGGTTTGccattaaaattgaaagcaaaccaaaattggctgtctttatgaaccggcacagaaaagaaagcattggaAAGATCAACAACCGAAAACCATTCAGCATCACCTGGTATTTGTGATAGGAGTGTGTACGGGTTGGGAACAATAGGAGCCTGTGTCTGAACTGCATCATTTACAGCCTGCAAGTCTTGCACAAACCTCCACTCAACCGGCTGGTCTGCGTCTCTTATCTTTTTGACAGGAAAGATGGGTGTACGCACAGGAGAGTTCTCACACTCCACAATCACTCCAGCCTTTTTCAATGCCTCAAAAACTGGCTTGATTCCCTCAATAGCTTCCCTTTTCAAAGGATATTGAGGTTTGCATGgtctgtaatcagattttggaataatttgaatagggtcacaattcttgatcaacc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00053 Ascorbate and aldarate metabolism
ko00140 Steroid hormone biosynthesis
ko00830 Retinol metabolism
ko00860 Porphyrin and chlorophyll metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU65008 True 1083 lncRNA 0.42 1 9251986 9253068

Neighbor

gene id symbol gene type direction distance location
srp68 srp68 coding downstream 256353 8971674 ~ 8995633 (-)
evpla evpl,LOC107742557 coding downstream 284606 8955256 ~ 8967380 (-)
acox1 acox1 coding downstream 300813 8933083 ~ 8951173 (-)
LOC122347059 rhbdf2 coding downstream 319553 8886508 ~ 8932433 (-)
ube2o ube2o,LOC100331775 coding downstream 368822 8857534 ~ 8883164 (-)
nol11 nol11,LOC107567930,LOC107734779,LOC107728513,LOC107660301 coding upstream 30335 9283403 ~ 9299043 (-)
si:dkey-237i9.1 LOC107567927,LOC107667603,LOC107591922,LOC107667296,LOC107731096,LOC108272757,LOC108424802 coding upstream 55518 9308586 ~ 9352668 (-)
LOC122346819 rptor,LOC107553319 coding upstream 333357 9586425 ~ 9710598 (-)
LOC122346913 nptx1,LOC107750979,LOC107553322,LOC107667295,LOC107701212 coding upstream 525182 9778250 ~ 9781983 (-)
trim25 trim25,LOC107710025,LOC107553309,LOC107669536 coding upstream 786359 10039427 ~ 10048868 (-)
G43881 NA non-coding downstream 307 9250699 ~ 9251679 (-)
G43856 NA non-coding downstream 226557 9025208 ~ 9025429 (-)
G43855 NA non-coding downstream 229105 9022519 ~ 9022881 (-)
G43791 NA non-coding downstream 457246 8599796 ~ 8794740 (-)
G43800 NA non-coding downstream 544012 8706786 ~ 8707974 (-)
G43884 NA non-coding upstream 2658 9255726 ~ 9256009 (-)
G43892 NA non-coding upstream 9335 9262403 ~ 9262609 (-)
G43894 NA non-coding upstream 11259 9264327 ~ 9264574 (-)
G43906 NA non-coding upstream 22572 9275640 ~ 9276072 (-)
G43915 NA non-coding upstream 27863 9280931 ~ 9281402 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other downstream 538128 8708706 ~ 8713858 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 1203978 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 1481535 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 1665619 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 1922421 7316947 ~ 7329565 (-)
G43890 NA other upstream 7548 9260616 ~ 9261245 (-)
G43896 NA other upstream 12934 9266002 ~ 9267324 (-)
G43899 NA other upstream 16120 9269188 ~ 9270922 (-)
G43900 NA other upstream 18350 9271418 ~ 9272305 (-)
anapc11 anapc11,LOC107553313 other upstream 692599 9945667 ~ 9948988 (-)

Expression


Co-expression Network