G43944 (LOC102215562)


Basic Information

Item Value
gene id G43944
gene name LOC102215562
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9503957 ~ 9533194 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU65094
tcacagtagggacagtgttcttttcttgatatgcttcattttttcgtctgtgaacatacagctgatgtgccttggcaaaacttcgatttttgtctcatctgtccacaggacattctcccagaagctttgtggcttgtcaacatgtagtttggcatattccagtcttgctttttatgattcgttttcaacaatggtgtcctccttggtcgtctcccatgtagtccactttggctcaaacaacgacggatggtgcgatctgacactgatgttccttgagcatgaagttcaccttgaatctctttagaagtctttctaggctcttttgttaccattcggattatccgtctcttagatttgtcatcaattttcctcctgcggccacgtccagggaggttggctacagtcccatggatcttaaacttctgaataatatgtgcaactgtagtcacaggaacatctagttgcttggagatggtcttatagcctttacctttaacatgcttgtctataattttctttctgatctcttgagacaactctttcctttgcttcctctggtccatgtcgagtgtggtacacaccatatcaccaaacaacacagtgattacctggagccatatatataggcccaatggctgattacaaggttgtagacacctgtgatgctaattagtggacacaccttgaattaacatgtccctttggtcacattattttcagtgttttctaggggtaccatcatttttgtccatgcctgtttcgtgaGTTCACTCTTC

Function

NR:

description
PREDICTED: contactin-associated protein-like 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65094 True 776 lncRNA 0.42 2 9503957 9533194

Neighbor

gene id symbol gene type direction distance location
LOC122346991 cep95 coding upstream 435296 9035026 ~ 9068661 (+)
polg2 polg2 coding upstream 493048 9002581 ~ 9010909 (+)
ten1 ten1 coding upstream 548703 8951326 ~ 8955254 (+)
aanat1 aanat,aanat1,LOC107742556 coding upstream 617576 8884440 ~ 8886381 (+)
cygb2 cygb,cygb2,LOC107698994 coding upstream 900156 8564382 ~ 8603801 (+)
p4hb p4hb,LOC107553316,LOC107591928,LOC107701207 coding downstream 397576 9930770 ~ 9940743 (+)
ppp1r27b ppp1r27,LOC107710012,LOC107591937,LOC107553297 coding downstream 407712 9940906 ~ 9943224 (+)
ccdc40 ccdc40,LOC107710029,LOC107669524 coding downstream 416657 9949851 ~ 9958610 (+)
card14 card14,LOC107710011,LOC107669523,LOC107553296 coding downstream 427174 9960368 ~ 9973522 (+)
LOC122347046 cbx4,LOC107710010,LOC107669529,LOC107553295 coding downstream 480695 10013889 ~ 10018092 (+)
G43938 NA non-coding upstream 76060 9422181 ~ 9427897 (+)
G43918 NA non-coding upstream 197791 9305885 ~ 9306166 (+)
G43905 NA non-coding upstream 227958 9275740 ~ 9275999 (+)
G43904 NA non-coding upstream 228321 9275175 ~ 9275636 (+)
G43902 NA non-coding upstream 230415 9273304 ~ 9273542 (+)
G43947 NA non-coding downstream 88970 9622164 ~ 9622730 (+)
G43940 nptx1,LOC107750979,LOC107701212 non-coding downstream 242443 9775637 ~ 9782041 (+)
G43963 NA non-coding downstream 256961 9790155 ~ 9791337 (+)
G43982 LOC107553309,LOC107669536,LOC107710025 non-coding downstream 514865 10048059 ~ 10054261 (+)
G44089 NA non-coding downstream 545808 10079002 ~ 10079437 (+)
LOC122346821 endov other upstream 73302 9362142 ~ 9430655 (+)
G43889 NA other upstream 242095 9260633 ~ 9261862 (+)
G43879 NA other upstream 250217 9253149 ~ 9253740 (+)
G43745 NA other upstream 766556 8590104 ~ 8737401 (+)
lhfpl4a lhfpl4a,lhfpl4,LOC107716887,LOC107656118,LOC107586345,LOC107710167 other upstream 1161811 8315037 ~ 8342146 (+)
G43962 rptor,LOC107728013,LOC107700860,LOC107553319 other downstream 253646 9786840 ~ 9811575 (+)
pecam1b NA other downstream 382856 9916050 ~ 9926257 (+)
LOC122346828 mcrip1,LOC107710264,LOC107553315,LOC107710031,LOC107591941,LOC108424716 other downstream 411324 9944518 ~ 9947929 (+)
dgke dgke,LOC107669536,LOC107710025,LOC107710026,LOC107669537,LOC107553311,LOC107591925,LOC107701198 other downstream 446671 9979865 ~ 10040364 (+)
atad5b LOC107578257,LOC107710017,LOC107669538 other downstream 583423 10116617 ~ 10123525 (+)

Expression


Co-expression Network