G43962 (rptor,LOC107728013,LOC107700860,LOC107553319)


Basic Information

Item Value
gene id G43962
gene name rptor,LOC107728013,LOC107700860,LOC107553319
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9786840 ~ 9811575 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU65119
CTCAAGATGGCGGCGCCCTTGCGCAAGTGTTGAGAAACAGTGTCGGCTATAAGGCTTGATTAAAACTAGCCACAGTTCCACACTATTGATCCATcatcaaaaacaacagaagGATGATGATGGGCCGCTGCGCCTGACCCAGAACCAAAAGGAGAGCCATCGCAGATCCCCCTGCAAACACCTCTTGATCCAGCGCCTGCAGATCCTCTACAGGCTGTGGACGCTGCCGTTTAAGCTGCTGACGGGAGTGATCTGTGTGATCGTCCGCGGACGCAGCGGATCTCCAGCTCAAGCTTTGGAAAACTCTGCTGATCAGAGATTCCTTATGAAAATGGATGCTGAGCTTCTTCACTCCCCTGTAGTTGGTCtggcagaggaggaggaggtggacaTGACTGACTGGAACCTTCCGCTGGCCTTCATGAAGAAACGCCACACAGAGAAAATTGAGGGATCCAAAGCTTTGGCTCAGAGCTGGAGAATGAAAGACAGGATGAAAACAGTCAGTGTGGCTCTAGTTTTATGTCTCAATGTTGGCGTGGACCCTCCTGATGTAGTCAAGACTTCACCCT

Function

symbol description
rptor Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in several processes, including TORC1 signaling; cellular response to amino acid stimulus; and positive regulation of protein serine/threonine kinase activity. Predicted to be part of TORC1 complex. Predicted to be active in cytoplasm. Is expressed in head; notochord; post-vent region; pronephros; and spinal cord. Orthologous to human RPTOR (regulatory associated protein of MTOR complex 1).

NR:

description
PREDICTED: regulatory-associated protein of mTOR-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65119 True 572 TUCP 0.51 4 9786840 9811575

Neighbor

gene id symbol gene type direction distance location
LOC122346991 cep95 coding upstream 718179 9035026 ~ 9068661 (+)
polg2 polg2 coding upstream 775931 9002581 ~ 9010909 (+)
ten1 ten1 coding upstream 831586 8951326 ~ 8955254 (+)
aanat1 aanat,aanat1,LOC107742556 coding upstream 900459 8884440 ~ 8886381 (+)
cygb2 cygb,cygb2,LOC107698994 coding upstream 1183039 8564382 ~ 8603801 (+)
p4hb p4hb,LOC107553316,LOC107591928,LOC107701207 coding downstream 119195 9930770 ~ 9940743 (+)
ppp1r27b ppp1r27,LOC107710012,LOC107591937,LOC107553297 coding downstream 129331 9940906 ~ 9943224 (+)
ccdc40 ccdc40,LOC107710029,LOC107669524 coding downstream 138276 9949851 ~ 9958610 (+)
card14 card14,LOC107710011,LOC107669523,LOC107553296 coding downstream 148793 9960368 ~ 9973522 (+)
LOC122347046 cbx4,LOC107710010,LOC107669529,LOC107553295 coding downstream 202314 10013889 ~ 10018092 (+)
G43940 nptx1,LOC107750979,LOC107701212 non-coding upstream 4799 9775637 ~ 9782041 (+)
G43936 NA non-coding upstream 58930 9384610 ~ 9727910 (+)
G43947 NA non-coding upstream 164110 9622164 ~ 9622730 (+)
G43944 LOC102215562 non-coding upstream 253646 9503957 ~ 9533194 (+)
G43938 NA non-coding upstream 358943 9422181 ~ 9427897 (+)
G43982 LOC107553309,LOC107669536,LOC107710025 non-coding downstream 236484 10048059 ~ 10054261 (+)
G44089 NA non-coding downstream 267427 10079002 ~ 10079437 (+)
LOC122346827 NA non-coding downstream 285355 10096930 ~ 10101815 (+)
G44120 NA non-coding downstream 358517 10170092 ~ 10175131 (+)
G44129 NA non-coding downstream 393057 10204632 ~ 10210377 (+)
LOC122346821 endov other upstream 356185 9362142 ~ 9430655 (+)
G43889 NA other upstream 524978 9260633 ~ 9261862 (+)
G43879 NA other upstream 533100 9253149 ~ 9253740 (+)
G43745 NA other upstream 1049439 8590104 ~ 8737401 (+)
lhfpl4a lhfpl4a,lhfpl4,LOC107716887,LOC107656118,LOC107586345,LOC107710167 other upstream 1444694 8315037 ~ 8342146 (+)
pecam1b NA other downstream 104475 9916050 ~ 9926257 (+)
LOC122346828 mcrip1,LOC107710264,LOC107553315,LOC107710031,LOC107591941,LOC108424716 other downstream 132943 9944518 ~ 9947929 (+)
dgke dgke,LOC107669536,LOC107710025,LOC107710026,LOC107669537,LOC107553311,LOC107591925,LOC107701198 other downstream 168290 9979865 ~ 10040364 (+)
atad5b LOC107578257,LOC107710017,LOC107669538 other downstream 305042 10116617 ~ 10123525 (+)
LOC122347096 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 other downstream 1058803 10870378 ~ 10882899 (+)

Expression


Co-expression Network