LOC122346827


Basic Information

Item Value
gene id LOC122346827
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10096930 ~ 10101815 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU65312
ACGGCTCGAGACGGAGGGTGAGGGATTTCATACGGTCACACGGCCCGGTATATTTTCGCAAAATATTCAGCTGTACGAATGATCATCCACACTGCATTCGTTATTCAGCTAACATCGGCGATCCTCTGCGGGGGTGGGGTGCGTGAGGGCCGCTGTCAGGATCCCACCCTGTGGGGCAGCCTCACACTGAATGGTGTCTCCCACAATGAAGGCTTTGGTGGATGCAGTCTGGGTGGTGTGGAGCATCGGGGCCTCAGTCTATGACTACATCCACACCAACGCCATGGAAGAACGCATTCACTCACTGGAGAGCGCTATAACCGTCCACCAGTGTGTCATTggactgctctctgctggaCTTGTGGCCCTCTTCACCTACATTCTTCTGAGGAAGCACTGACCCAGGATTTCAGCCATTTTTTGTATGCAAGACTACATGCCAAGCTttgttcagttcattttaaaggGATTTTAAGAAGTCTGACTTTTACCTAATTGATTATTTGCTCAACTTTCTTAGTTTCCGCTTCTGTTAAAATGTCCCTACTGTATTAGCTGTGTAAAGCAAAATAACAGTatctctaaattaaatatagtcTTCCGCCATGTCTCATAATGAACTTTTAAGCTCATTGATGGCTACCACAGAGGAAAGATTCAGAGAAGTTACCTGTTCTCAGTTCTTTGCACAAAGCTTGGTGACAGCTGAACAAACAAAACGCAGAATAACTACTGGATCATCAGGCTTTTCAGCCTGTTTGCTGCTATCATCAGTGTGTCTCGGTTTCATTTAACTTGACAATGACTAAGCATAATGCAACTTATTTATGTTATCCTATTACAGTTCAGCTTATTTCGTAACATTATGGTTAATGAGAGGCATCAGTGTCATCAATTAAATGATTGATTGCACAGCTTGATAGAGAACTTAAAGTGTCCTTAATCACAAGGTATCTCATGTAGTCAACTTCATAAAGTTATCAGTGTATTAACTACTACATGTGAAGTgggttttcaacattgatttcATCTGAAAGCTCATCGGTTAATGCACTATTGTTTTATAGGTTCTAATTCTTActtttaccatgtttttttccttGAGGCAAAAACTTACTCATGTTGCACATGTTCTGTCATAGCAAAGTGAATGTTTAGCTTTGTAACGCAAAAAGAAGTCAGAGTATTTTGACTTTGAATTGATGATACCTACTAAAGCATTTCTCTACTGTACTATGTTTGAACTGATCTGTTTTATTTGGTGTGCTGGTCTAAGTGAGGATCTGTTAACATTCAATGtaaagcatttctttaaaagacAAATGTCTTAAATGTTTATTACTGGAACAacagaaaagcacaaatgtcCATGCACTAGCATGTTTGAAACATTTCAGAGGAAAAAGGGAATTGGGCTTTTGAAAGAGAAATCGAGGTTTGAGGTCCAAATATGAACAAATCAGAAAAAACGTTGAAGACTGATGTTGTGTTTACATGTGCCCGGTCTGCAGAAGTGTGTACTTCGTGGTAAAACGCTCAACGCTTTCGCCCTCCAGGGTCTTAACAGCCCTCCAGTGGAGCTTCCCGCAGTTTTCTGGGTTTCCATGCCTTTCTAACTCTTCCTTGATGTATTCAATCCAGAG
>XR_006251178.1
TCACTCTCACCGTGTCCGCCACCAGCCTTCCTCCTCGGAGCTTCTTCGGAAAGAACGGGCATATCGCCTGAAGAAGAACGGAAAATGTTGCCGTGTAGTGAGAAGTTGCTGCCACTCTTCACACATTATCATCACCCGCCCCCTTATTTGCGCTCAACTCCTCATGAAGACACGGTATATCCACAGGGACCGCTTACAACATTCTCCCTTTGCGCAAAAGTGGACGAAGGGAAAAAGTCAATAATACGCGGTGGAACAGTGAGCCTCGTTAATGCGCAAGCCTTTTGAAATTCTCCATGTACGCTGTTTTAGCCAGAGCGACCCCATGTGCTCGTTATTAATGAATTATCCATCTGGCCGCCGTCGACTATCATATTGTACGTGTTGCGCTGAAGCGCCACCGACTGGTCCTTTGACCACATGCGGAATAAATTGTGTCTGGGACCAGAATCAGAAACTTATACTACGGCGAAGGCTtggcttatgaatattaaatgagCAACGGCTGACGTTGCTTAGTAACCCTCCAGGAGTGTCCATTCACGAACCctaattatgttttaatctTTGGACACTCTTTGGTTAAACCGCTTGCTGGTTTGATATAGCGGGTTAGACGTCACTCAAGCTAATTAATATGCATGAGCCGACGCTTCGTCGTAGTAGGATGTGTATATCCGCGCCCGGGACCTCCCAAAATTGGATCGTGGATGTGATCGCATAGCCTGGCTATTTCAAGATCCTCTGTAGAACCGATGAAAAACGCACTCGACCACCTGtcgtagaaaaaaaaaagtcatttatgttttatcCAAACGCTTAgtggctttttaaaataaatacgtttttgctCAGTGCCTTTGCTTAATATGTAATTAGAATAATCCGTTGTTATCACATAAATGTTGTCTCTGAAGTCTGTTAAGCGATGTAAATGTAACCTGTGTGTGACAtttaaattaagacattttttatagGTCACTTTTGGGGTGAAACAGTCTTATCATTAGGCAACAGACcgtaaatgtatgcatttttcttCCGTTATTTGAGATTCACGTTCTGAAGGGTCTCATTGCAGGTGTGGAGCGGCCCCCTGTGGTGACACATGGATGTAGATCGGTCGTAAACTCCGGTATTATTCCTCTTTTTCCACAAATGTAAACGTTATAATAGCAAACGTAAACGTTACGGGCCTAGTacgaagaaaaaaagaacataaaaacgtattcaaaatattttaagagcTCATTTAAATACCAATAttgtgtttgtaaatgttttttttcccgcGTTCTCCGTTGTTGACGTTTTCCCCACATTATGTTGAAAGAGATCTGTGGTTTTCTATAGAGGTTGATTTAATTCATTGAAATAGTTAGTCACTGGAAGACACGCCCTTCGCGGTGTCGTCATCACGGCTCGAGACGGAGGGTGAGGGATTTCATACGGTCACACGGCCCGGTATATTTTCGCAAAATATTCAGCTGTACGAATGATCATCCACACTGCATTCGTTATTCAGCTAACATCGGCGATCCTCTGCGGGGGTGGGGTGCGTGAGGGCCGCTGTCAGGATCCCACCCTGTGGGGCAGCCTCACACTGAATGGTGTCTCCCACAATGAAGGCTTTGGTGGATGCAGTCTGGGTGGTGTGGAGCATCGGGGCCTCAGTCTATGACTACATCCACACCAACGCCATGGAAGAACGCATTCACTCACTGGAGAGCGCTATAACCGTCCACCAGTGTGTCATTggactgctctctgctggaCTTGTGGCCCTCTTCACCTACATTCTTCTGAGGAAGCACTGACCCAGGATTTCAGCCATTTTTTGTATGCAAGACTACATGCCAAGCTttgttcagttcattttaaaggGATTTTAAGAAGTCTGACTTTTACCTAATTGATTATTTGCTCAACTTTCTTAGTTTCCGCTTCTGTTAAAATGTCCCTACTGTATTAGCTGTGTAAAGCAAAATAACAGTatctctaaattaaatatagtcTTCCGCCATGTCTCATAATGAACTTTTAAGCTCATTGATGGCTACCACAGAGGAAAGATTCAGAGAAGTTACCTGTTCTCAGTTCTTTGCACAAAGCTTGGTGACAGCTGAACAAACAAAACGCAGAATAACTACTGGATCATCAGGCTTTTCAGCCTGTTTGCTGCTATCATCAGTGTGTCTCGGTTTCATTTAACTTGACAATGACTAAGCATAATGCAACTTATTTATGTTATCCTATTACAGTTCAGCTTATTTCGTAACATTATGGTTAATGAGAGGCATCAGTGTCATCAATTAAATGATTGATTGCACAGCTTGATAGAGAACTTAAAGTGTCCTTAATCACAAGGTATCTCATGTAGTCAACTTCATAAAGTTATCAGTGTATTAACTACTACATGTGAAGTgggttttcaacattgatttcATCTGAAAGCTCATCGGTTAATGCACTATTGTTTTATAGGTTCTAATTCTTActtttaccatgtttttttccttGAGGCAAAAACTTACTCATGTTGCACATGTTCTGTCATAGCAAAGTGAATGTTTAGCTTTGTAACGCAAAAAGAAGTCAGAGTATTTTGACTTTGAATTGATGATACCTACTAAAGCATTTCTCTACTGTA

Function

GO:

id name namespace
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0048017 inositol lipid-mediated signaling biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65312 False 1643 lncRNA 0.41 2 10098347 10101815
XR_006251178.1 True 2650 lncRNA 0.42 2 10096930 10101405

Neighbor

gene id symbol gene type direction distance location
rab11fip4b rab11fip4,LOC107710022,LOC107553307 coding upstream 23402 10056898 ~ 10073528 (+)
cbx8b cbx8,cbx8b,LOC107710282,LOC107710028,LOC107553294,LOC107591932,LOC107669528 coding upstream 72048 10022614 ~ 10024882 (+)
LOC122347046 cbx4,LOC107710010,LOC107669529,LOC107553295 coding upstream 78838 10013889 ~ 10018092 (+)
card14 card14,LOC107710011,LOC107669523,LOC107553296 coding upstream 123408 9960368 ~ 9973522 (+)
ccdc40 ccdc40,LOC107710029,LOC107669524 coding upstream 138320 9949851 ~ 9958610 (+)
suz12b suz12,LOC107710018,LOC107553303,LOC107669539,LOC107591916 coding downstream 5365 10107180 ~ 10116281 (+)
LOC122346392 NA coding downstream 24961 10126776 ~ 10130543 (+)
rhot1b rhot1b,LOC107669542,LOC107710015,LOC107553301,LOC105892309,LOC103373013 coding downstream 28831 10130646 ~ 10141607 (+)
mchr1a mchr1a,LOC107704000,LOC107728182,LOC107733891,LOC107561025,LOC107659856 coding downstream 325776 10427591 ~ 10430538 (+)
stx8 stx8,LOC107704006,LOC107555374,LOC107733906,LOC107569362,LOC107660464,LOC107757428 coding downstream 422165 10523980 ~ 10578805 (+)
G44089 NA non-coding upstream 17493 10079002 ~ 10079437 (+)
G43982 LOC107553309,LOC107669536,LOC107710025 non-coding upstream 42669 10048059 ~ 10054261 (+)
G43963 NA non-coding upstream 305593 9790155 ~ 9791337 (+)
G43940 nptx1,LOC107750979,LOC107701212 non-coding upstream 314889 9775637 ~ 9782041 (+)
G43947 NA non-coding upstream 474200 9622164 ~ 9622730 (+)
G44120 NA non-coding downstream 68277 10170092 ~ 10175131 (+)
G44129 NA non-coding downstream 102817 10204632 ~ 10210377 (+)
G44135 LOC107698681,LOC107591908,LOC107754870,LOC107566423,LOC107718711,LOC107701838 non-coding downstream 126499 10228314 ~ 10228626 (+)
G44137 NA non-coding downstream 140965 10242780 ~ 10243410 (+)
G44189 NA non-coding downstream 256777 10358592 ~ 10358799 (+)
dgke dgke,LOC107669536,LOC107710025,LOC107710026,LOC107669537,LOC107553311,LOC107591925,LOC107701198 other upstream 56566 9979865 ~ 10040364 (+)
LOC122346828 mcrip1,LOC107710264,LOC107553315,LOC107710031,LOC107591941,LOC108424716 other upstream 149001 9944518 ~ 9947929 (+)
pecam1b NA other upstream 170673 9916050 ~ 9926257 (+)
G43962 rptor,LOC107728013,LOC107700860,LOC107553319 other upstream 285355 9786840 ~ 9811575 (+)
LOC122346821 endov other upstream 666275 9362142 ~ 9430655 (+)
atad5b LOC107578257,LOC107710017,LOC107669538 other downstream 14802 10116617 ~ 10123525 (+)
LOC122347096 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 other downstream 768563 10870378 ~ 10882899 (+)
pik3r6a zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC105903457 other downstream 781145 10882960 ~ 10892460 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other downstream 1313458 11415273 ~ 11420330 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other downstream 1900332 12002147 ~ 12010539 (+)

Expression


Co-expression Network