cd7al (LOC107710016,LOC107553302,LOC107669545,LOC107698686,LOC107710292,LOC107591915,LOC107553301,LOC107710015)


Basic Information

Item Value
gene id cd7al
gene name LOC107710016,LOC107553302,LOC107669545,LOC107698686,LOC107710292,LOC107591915,LOC107553301,LOC107710015
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10138905 ~ 10145168 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU65385
GATTTCATTATGCTCAGAGACGATCTGGCTTTCTAATCGGTCactattgcattttttaattctcttttttcaAGAATGTTAGGTTTTATTTTCGCTCATGTTCTCTTGTTTCTTATCACACCTTCTATAACTGAGTAAGAAATTCATCCATTGACATTTCCTGCGAATcggcaaaaaaagaagaaaaaccatTTGCCTTTTCGCTGAAACGCAGGTTGCTGCAGTCCAGACGAGTGTTGTATCTTTCTAAAGGATTCGCACCGTTCATCAATAAATCTGAGGAGAAGGACCGTATAACTGTACGTGATGAGCTGGACAACCACACAGTTCATCTGACAATCTCAACCCTGCAAGGACAGGACACGGACGTCTACCACTGTGAATTCCACTATGGAGATCTTCCATATGATCAGAATGTTCCCGGCAAGATGGAGTTCTTCATCTATGTTGAAGACTCCTCTCATGAACCTTGTAACTGTTTGAGTTACCTGCCGTTGCTGTATGTGATCTCTGGAGCTGCATGTCTGCTGGGTGTTCTGGTTTTCTCTCTCGCTACAGCCTATTATTGTAAATGGCTCAACCGTAGAAAGCCACAGCCTGTAGTTCCTGTTTATGAGGAGATGGCTGGGGTGCTGCCCACCAAAGGAAAAGCCACAAGCTGTCACACTGATATTACAAAACTGGATGAAGCAAACAGCTCTGTGGCCCATTtgataaacaaagaaaactttTACGTCAATTAATTTAACTGAATGTGTTGAATGAAAAGTGTCTCTACGAAGTGCTGATCATGATGATGCTCCAGCTCACCAACCAAAGGTCGTTTGTTAGCGTAACATCTGTCTTTTCATCTGTCATCTGTATACCTTCACGTTAATGGTACTGATGCTACAAATACTGTCAGCATTTCTGATATCTGAATGCTCTTTTTGTCTGCGGCACAACGTAGCTCTGATAAAACATGTCGCGATACATTGGCAAACAGTGGTTTTCCCACTTTCTCAAAAAAGGGATCGCGACTTCGCAAAAATGCATTGTTGAAggaactgtttatttaaatgttggaGAAGGACTGTCAAAGGAAAACAGAAATCCATTCGACAGACTTTTGTATCATTTGTCAAATGTTGAAGCATGCAAAGAAATCATACAAGACTTGAGTGACTGCACGGCTTTGCATTTAAACAAGCAGACATGACTTCCTGTCTCGTCACAAACTTGCTCGATTTTTGGATTGCAAATCAGACATTTCGAGACGAGCGAAAGCAAAGTGTTGCATTCGATGGCTTTAAATATGAAtgctatgtttttattcactttgtaacaaataaatattttctctcatttacatatttacagtttgtttgcgtcatatttaaagaaaaaaaacatttttctgtctCACAAAGTCTTAAGACCTGGGAAAGTGCATACTACAGTAATAATCGAATAGAAATATAACAGCTATGTTactttatgctttatttt
>TU65386
GATTTCATTATGCTCAGAGACGATCTGGCTTTCTAATCGGTCactattgcattttttaattctcttttttcaAGAATGTTAGGTTTTATTTTCGCTCATGTTCTCTTGTTTCTTATCACACCTTCTATAACTGAGTAAGAAATTCATCCATTGACATTTCCTGCGAATcggcaaaaaaagaagaaaaaccatTTGCCTTTTCGCTGAAACGCAGGTTGCTGCAGTCCAGACGAGTGTTGTATCTTTCTAAAGGATTCGCACCGTTCATCAATAAATCTGAGGAGAAGGACCGTATAACTGTACGTGATGAGCTGGACAACCACACAGTTCATCTGACAATCTCAACCCTGCAAGGACAGGACACGGACGTCTACCACTGTGAATTCCACTATGGAGATCTTCCATATGATCAGAATGTTCCCGGCAAGATGGAGTTCTTCATCTATGTTGAAGACTCCTCTCATGAACCTTGTAACTGTTTGAGTTACCTGCCGTTGCTGTATGTGATCTCTGGAGCTGCATGTCTGCTGGGTGTTCTGGTTTTCTCTCTCGCTACAGCCTATTATTGTAAATGGCTCAACCGTAGAAAGCCACAGCCTGTAGTTCCTGTTTATGAGGAGATGGCTGGGGTGCTGCCCACCAAAGGAAAAGCCACAAGCTGTCACACTGATATTACAAAACTGGATGAAGCAAACAGCTCTGTGGCCCATTtgataaacaaagaaaactttTACGTCAATTAATTTAACTGAATGTGTTGAATGAAAAGTGTCTCTACGAAGTGCTGATCATGATGATGCTCCAGCTCACCAACCAAAGGTCGTTTGTTAGCGTAACATCTGTCTTTTCATCTGTCATCTGTATACCTTCACGTTAATGGTACTGATGCTACAAATACTGTCAGCATTTCTGATATCTGAATGCTCTTTTTGTCTGCGGCACAACGTAGCTCTGATAAAACATGTCGCGATACATTGGCAAACAGTGGTTTTCCCACTTTCTCAAAAAAGGGATCGCGACTTCGCAAAAATGCATTGTTGAAggaactgtttatttaaatgttggaGAAGGACTGTCAAAGGAAAACAGAAATCCATTCGACAGACTTTTGTATCATTTGTCAAATGTTGAAGCATGCAAAGAAATCATACAAGACTTGAGTGACTGCACGGCTTTGCATTTAAACAAGCAGACATGACTTCCTGTCTCGTCACAAACTTGCTCGATTTTTGGATTGCAAATCAGACATTTCGAGACGAGCGAAAGCAAAGTGTTGCATTCGATGGCTTTAAATATGAAtgctatgtttttattcactttgtaacaaataaatattttctctcatttacatatttacagtttgtttgcgtcatatttaaagaaaaaaaacatttttctgtctCACAAAGTCTTAAGACCTGGGAAAGTGCATACTACAGTAATAATCGAATAGAAATATAACAGCTATGTTactttatgctttatttttaaaagctaaatatttatattggttTTCCATGTACACTGGAAATAGCTAGGGTAGACAGAAAATGAAGGAATTAGGTTTTTGGGTCTGTTCATCGAGATCTGAGAAGGGCTCTGTACATGGCGAAGCCAAGCATAGCACAAACTGTGGCTCCGACACTCGCTCGGAGCCAAAACGTAGAGCTCTTCAGGTCAGCATGGGTGATATGCCTGAGAAAAGAGATTGAACGTTTTTTAGTAACAGCtcacaaatgaaaatgatgtctctcttgtcgttccaaacctgtctaATATCTTTCTTATGCTGAACACACAAGAAGGTACTTTATcttctatggaagtcaatggtggccGATGACCAGCTTTCgtcaaaacatcttttttgtTCAAAGACTTGTACAGGTTTGGAGCGATATGAGGGTATTTCAGGTAAATAAAACTAATCGAAAGTTTAGCTTCTGCAgtgaacattcaaataaaactaaaacagtttaGTTGATGATGAATGCCCAAAACAGACAAACCAACAAATTCAAATGAACAGCATGATAAATGCTGGATATGGGTGGttgactaataaaaatgtatgtatcaatgtgtgacagcaaaaaaggaaaaaaagaagaaaaacaacactCTCTAGGAGATGTGTATTTATTCTTCAGAagtttatcttcttttttttgttttgttttaaacatttctctgtCACACCACAGATACAACACACTGATACATCAGTTACCCATATACAAAGACTTACTTAAAGgggatgggaaaaaaaaaaaccaaaaaacgaTATTAATGTGTAAcactaaaaattacaaaacgGAAGGATGAAGAAATATGGCAAGTTTCAGCGTCAGGAAATAGCAATGGCAGAGAGAGAACATAAAGAAACTTTAAGAAGAGGaaataaagaggaaaatgaCAAGAACTAGAGCAACTGTGTTGCAACTCGTAGGAGAATGAAAGACTGAGCTGCTGCATGTCACAAGGAGAAAGACATGAGTCtacacatgcattttaaaagcaggAACAATGCACAGGAGAGTGCGTGAATCTAAACCTAACATTATACCTATCCCCCATTGGCCATGGCAGGCTAAAGGCCAGCTATAACTAGTTTTTGTCATATGTGGTATATGCAAGGCTATATAAGAGGGTGTATCACATATGCAGATTGTatgaattgttattttattagaagtcattttgtataattaaacaatatagtcaatattatcattataactACTAACACACAAATTAACAACTGTCTTTATGCAGGCATACGTGTTTGTGTAAAGCAGAAGAAAGTGGGCTTCCCCAGCCTTAAAGTCCCTACATTCCTGCTTCCGTCAAAGATTTTTCTTATCCACATAAATACCTAAGGGACTTTCTACTTGTCACTAAACTTGCTCACTGCAGAGATTTGTGAAGTACTGCTCCTTTATCACATGTTTGTGAAAAAGTATCCAAAAAGGCTTGGTGTCCCATCTAAAGAAATCTACGCCccatcactgaaataaaataactgcaCCGCCGGTCTACTTGTGTATGGTCATGCGGTGTATGTAGTAGTGTAAGTCAAGGGCTTGTTAAGCCCAACTAAACGAGTGTGAATCAGACTGagaataataaagtaaaaaacacGCTGAATCATGaggaaaggagaaaaagagataaGGTGAAAGGAAAGGTGATGAACCAAGATAAAGCCATCCTGAGAACCTGCTAAAGATGACGGTGTAGAGTTTGGTCCGAACGGTCTGCACGAGCTCAGAGTTCAGGAAGTTCTGACACAGACAGAAGGTACACCTGTTACAGGTACACATGCAGCGCAGACGCGCATGGCTgccaacacacacagaaagataCAGGCAAACAGAGTCACTCAGAAACCGGATTTTAAATGATCAACAGAGGACAGtcttcaaaaaataaagaagtgAAAGAATTAAATGAACAGGTCATTTGAATGTTTCCTAAGGTTCTTTCAAACAAGAGTAACATACTCTAGTATTTCCTGTCTACACTGTCACATagcgagggggaaaaaaaaaaaattctgatttatATCACATGCTTGGATATTTTGCAATTGGTACcgaatataaatgcatatgtacTGTAGACAGTGTGATGTCATGAGGAGACAGCAATTGAAGAACAGAAATCATTTGACTCATAAAGATGATCTGCAGGAGAAGCTTTctatttttaggaaaaaaaaccccaccaaaACATGTATTGTTTTCGCTGTTATCTGTATGTGGAAATAACCTCTGAGAGATAAACAAGAGAGGtcaattaaaacagaaagaataCAGAAGAGTTTGTGACTGATGAGAGGAGGCTTACGGGTACACAGCCATGGTGGTGAGCTTGATGAAGATGTCTCTGGTGGGCGCCGCGGCCGTGTTGCAGGTGTAGGACTGAGGCGGCGGCATCTTGTGCTTGCGGCAGAATTCCAGTGGAGTCATACAGTACTGCTGCTTTGTTTCTGGCAGGTCGGACTTTGCAGCAATCAACATGCATGGAGTCTTACTATCCATGAAGTATTGCTAGTAAATAAAGTGaagcaaaatgcattcaaaacccaTACATCGGTTGAAAAAGAGAACAGGTATCATGCAGAATACGTATTAAAGtgaattacagtaaaactgaTGCGAAGTTGTGTTCATGTATGGCGGTTTAATTTCA
>XM_043240992.1
CTTGATATTTCCACACAGCATGATTTCATTATGCTCAGAGACGATCTGGCTTTCTAATCGGTCactattgcattttttaattctcttttttcaAGAATGTTAGGTTTTATTTTCGCTCATGTTCTCTTGTTTCTTATCACACCTTCTATAACTGCACATGGGGGTATTGTTTATATCCACAGAGTAAGAAATTCATCCATTGACATTTCCTGCGAATcggcaaaaaaagaagaaaaaccatTTGCCTTTTCGCTGAAACGCAGGTTGCTGCAGTCCAGACGAGTGTTGTATCTTTCTAAAGGATTCGCACCGTTCATCAATAAATCTGAGGAGAAGGACCGTATAACTGTACGTGATGAGCTGGACAACCACACAGTTCATCTGACAATCTCAACCCTGCAAGGACAGGACACGGACGTCTACCACTGTGAATTCCACTATGGAGATCTTCCATATGATCAGAATGTTCCCGGCAAGATGGAGTTCTTCATCTATGTTGAAGACTCCTCTCATGAACCTTGTAACTGTTTGAGTTACCTGCCGTTGCTGTATGTGATCTCTGGAGCTGCATGTCTGCTGGGTGTTCTGGTTTTCTCTCTCGCTACAGCCTATTATTGTAAATGGCTCAACCGTAGAAAGCCACAGCCTGTAGTTCCTGTTTATGAGGAGATGGCTGGGGTGCTGCCCACCAAAGGAAAAGCCACAAGCTGTCACACTGATATTACAAAACTGGATGAAGCAAACAGCTCTGTGGCCCATTtgataaacaaagaaaactttTACGTCAATTAATTTAACTGAATGTGTTGAATGAAAAGTGTCTCTACGAAGTGCTGATCATGATGATGCTCCAGCTCACCAACCAAAGGTCGTTTGTTAGCGTAACATCTGTCTTTTCATCTGTCATCTGTATACCTTCACGTTAATGGTACTGATGCTACAAATACTGTCAGCATTTCTGATATCTGAATGCTCTTTTTGTCTGCGGCACAACGTAGCTCTGATAAAACATGTCGCGATACATTGGCAAACAGTGGTTTTCCCACTTTCTCAAAAAAGGGATCGCGACTTCGCAAAAATGCATTGTTGAAggaactgtttatttaaatgttggaGAAGGACTGTCAAAGGAAAACAGAAATCCATTCGACAGACTTTTGTATCATTTGTCAAATGTTGAAGCATGCAAAGAAATCATACAAGACTTGAGTGACTGCACGGCTTTGCATTTAAACAAGCAGACATGACTTCCTGTCTCGTCACAAACTTGCTCGATTTTTGGATTGCAAATCAGACATTTCGAGACGAGCGAAAGCAAAGTGTTGCATTCGATGGCTTTAAATATGAAtgctatgtttttattcactttgtaacaaataaatattttctctcatttacata

Function

NR:

description
PREDICTED: uncharacterized protein LOC107710016

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65385 False 1488 TUCP 0.39 4 10141611 10145147
TU65386 True 4194 lncRNA 0.39 4 10138905 10145147
XM_043240992.1 False 1401 mRNA 0.40 4 10141747 10145168

Neighbor

gene id symbol gene type direction distance location
tefm tefm,LOC107591914 coding downstream 12164 10123815 ~ 10126741 (-)
utp6 utp6,LOC107710019 coding downstream 32097 10101483 ~ 10106808 (-)
trim25 trim25,LOC107710025,LOC107553309,LOC107669536 coding downstream 90037 10039427 ~ 10048868 (-)
LOC122346913 nptx1,LOC107750979,LOC107553322,LOC107667295,LOC107701212 coding downstream 356922 9778250 ~ 9781983 (-)
LOC122346819 rptor,LOC107553319 coding downstream 428307 9586425 ~ 9710598 (-)
znf207b znf207b,LOC107669543,LOC107710013,LOC107553300 coding upstream 1056 10146224 ~ 10152064 (-)
rhbdl3 rhbdl3,LOC107718708,LOC107701837,LOC107698683,LOC107591910,LOC107754871 coding upstream 22068 10167236 ~ 10202756 (-)
sept9b sept9b,LOC107754867,LOC107566422,LOC107561033,LOC107718712,LOC107674495 coding upstream 150836 10296004 ~ 10335041 (-)
zgc:174863 NA coding upstream 232163 10377331 ~ 10384083 (-)
jpt1a LOC107728178,LOC107659861,LOC107733897,LOC107561029,LOC107573532 coding upstream 244879 10390047 ~ 10394216 (-)
G44105 NA non-coding downstream 40726 10097980 ~ 10098179 (-)
G44095 NA non-coding downstream 54630 10083990 ~ 10084275 (-)
G44065 cbx4,LOC107710010,LOC107669529,LOC107553295 non-coding downstream 120837 10013936 ~ 10018068 (-)
G44040 NA non-coding downstream 195687 9942615 ~ 9943218 (-)
G44037 ppp1r27,LOC107710012,LOC107591937,LOC107553297 non-coding downstream 196899 9941570 ~ 9942006 (-)
G44167 NA non-coding upstream 93251 10238419 ~ 10238618 (-)
G44168 NA non-coding upstream 97042 10242210 ~ 10242509 (-)
G44208 NA non-coding upstream 227472 10372640 ~ 10372852 (-)
G44209 NA non-coding upstream 228002 10373170 ~ 10373568 (-)
G44210 NA non-coding upstream 230972 10376140 ~ 10376578 (-)
c6h17orf67 cunh17orf67,LOC107591943,LOC107669532,LOC107701203,LOC103044666 other downstream 111225 10025453 ~ 10027680 (-)
anapc11 anapc11,LOC107553313 other downstream 189917 9945667 ~ 9948988 (-)
G43900 NA other downstream 866600 9271418 ~ 9272305 (-)
G43899 NA other downstream 867983 9269188 ~ 9270922 (-)
G43896 NA other downstream 871581 9266002 ~ 9267324 (-)
tnrc6c2 LOC107701838,LOC107566423,LOC107754870,LOC107591908,LOC107718711,LOC107698681 other upstream 59449 10204617 ~ 10243425 (-)
LOC122347367 NA other upstream 210709 10355877 ~ 10358850 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other upstream 289036 10434204 ~ 10509003 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other upstream 433821 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other upstream 564877 10710045 ~ 10716741 (-)

Expression


Co-expression Network