G44246 (LOC107733892,LOC107555367,LOC107703995)


Basic Information

Item Value
gene id G44246
gene name LOC107733892,LOC107555367,LOC107703995
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10516890 ~ 10523222 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU65530
aaCTTAATACTTTACAACTTCTATTCAAAAGTCTTGACAAACGTATTCCAGAAATAAAGTGAACAATGGgacaacaaatataataaaatcatttaacaaataacatagtgatttttttaatgcaaataaatattattctgGATATTTGaatcttacatttacattatatttataattttttttactgttcatacagcaacaGCACAATAACGCACACGTAGTCCTACATTGCAGTCAAATAATTGCTTTAATAGCCTGATGACATGTTGAAGTGTGACGTGTGGGCAAGCAAAGAAACTCCAGTCTTCACTCCGACAGCAGTGGTGGAACAGACAAAGAGTGCTGGATACCCCACACCTCTAGAGACTGGATCTTGAAGCATCCCCTGCAGAGAGGTGGGCTCTCAAACGTATGGCAGTGTTCAGAAGATCCGGCTGTCAGATCAGCCTGCAGGTTCAGCGCATGGCCACCATCACCACCTGCAGGACGGAGACCACACATTGAGTGTGTACACAACAGTTATTCTAAATTAAGAACGAGCCGATTTTCCCAGTAATGTTGACACATAGGCAATGCAGCAGCACGTTTGCAGGTGAAATGCTCAATCAGGGCATGCAAACAATTAGATAGGGGTTAACTGAGCCTGAATTACACACTGAAACCTTTCTTATCGTTAACGGTAAAAGCTCACCAATTAAAAGCGTCTCATTATTTCCTGCCATGAATTTAAACGTTGACATTGTGCAGAATAATGCGGACTCGTATGTTTGATTCAGAGAGGCTCCATCGGGTCCGTCCACATGAGTGCTCATCAGAGAGCTGGTGGAGAGAGTTTGCTTCTGATGGGAGGAATTACATTTGTCAGACGTCCCAGAGATCTGCAGCACTGTACGCTGGTACAGCTCCATTCCCGGTCTTAGCTGAAAAGTCGATTTGATTAAAATCGCATTCTTGCGCATACAATGCAACACGCGCTTTGAAGCGCAGTAAGTTAATTGAAGCAGATGGCAAATGTAGACTTACTCACAgtgaaaacaaaacactctCCTGTGCCAAAGAACTTAAGCCCCTTTTCATCACAGTTCTTCTGAGCCCAATCAGAGGACAGGAAAGCCCCGCAGCTCCTCATCTTCGGTTTTCAAGAGTAAAACAGTTGGATCGTGCCCCTCAACTTTAGAGTAAAACctattaatcaataaataaagcacatcattttaaatatgtaaaaaagaaataaaagaaattcatacgTTTGCTGAACAAGTATGCATGctgatattttacattaaaaaatatcactATTTTTTTACGTTATATTTGTCAAAGAATGCAGAAAACAAAAGTGTCACAAAAATACTACCATTACAACTGATATAAGATGTGATGATCATCAGAAATGatttagagtgatttctgaaggatcatgttgcactgaaaatgattcataatgaTAAGtgttattaacattaaattacattcgCAAATTATAAGGCTACTGTATATTGATAGTGTAGCTCATGCGAGTGTGAACCGTGACTTACAAGGAGAGACTTCTGCCGTGAATATTTGTACTGAATAGCTGCACGGGACTGAACAGAGCAAATCTCTCTGGAATCCAGGCCCAGACCACCCTCATCTCCGTTTCAGTCACTACAGAGGAGCTGAAGGCCCGGAAATCCATAGATTGGTATGAGcttgaaaaagagaaatatttgtTGCAGTTGAATTGTCAACGTCAAGGAGTTACGCAGAAGACCAAAAAGGACTTCACAAACCCCTCACCTCTTACTGTGGATGTCCTTATGAAGCAGTGCCTCCTTATTGGCATTGAAGAGGTAAGTCAGTTCCTTACGCGTGGGCAGCTGTATATCAAAAGCCCTCTGAAGCAGAGCGTCGACAGTACTGTGCCGTCCCACATTCTGCACAAAACTCTTCATGTCCTGTCTGAAGTCATCGACGTGGGCCACTCGAGAAGCCACAGAGACCTTGTAAAAGCTGAGCAGAGCAAGAGCTACACGGTATAAAACTTTGTAGCCCTCCATTAGATAGACGTCCAGCACTCTGATAGCGTACGTGAAGGGCAGATCGGCGAAGATCCACATGATCCAGTCAGAGTAGAACTCAAACAGGTTCTGGTGAGAGCTGGCTATAAGCTTCCGGATTCCCTTGCAGTATTTATTGGCAAGGTCACCAAAGGTCATGCACGAGGCATGCGAAGTGAGGAAAGTCCGGTCAATGTAGCGCTTTTTAACGTCTGTGTAGGACACCAGGGAACAGATACTGTGGAAACACTGGGCTTCATCCCCACTGAAGTGCAAGAGAAGAGACACCAGAGCGGACAGAATGGGACAGAAGCTGACATCGGGAAAATGGTGGTTTATacaaatgagaatttttttcACCGAATTCAGACCCGCTTTATTTAGGCAGTATCTGGGAATTTCTCCATCCTCCATAAACTTTGGGAAAGGATGCGTGCTTGTTTGCAGTTCCCCAAAAAGCTTTCTAACCAAGCCTTGGTAAGCGTCCAGATCAGCGGTGCTGGATGTGCTCTCGATGCTGTGGATGATGTGCTGGTAAGCCTTGGCTCTGAGAGTATGAGGCATGGACCAGAATCCTGTACGGCCCATTGCTTTGAGCACGTAATGATCACTTGAGAGGATCTTCCGATAGCGGACGGCTGCGTCTGGGGCAATCTTTTCCCAGTCGACATACTGACCGTATTTCATCCCAGAAGAAGAGCTTATCTCCCAGTTATCCACCTCCGAAATGGTCATCATGGaTTCTTCCTTTTGATACGTAGTTGGAACAGGTGCCACCTCGGAGGCCCGGGTTCTTTCAGTTGGG

Function

NR:

description
PREDICTED: TBC1 domain family member 24-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65530 True 2847 lncRNA 0.43 3 10516890 10523222

Neighbor

gene id symbol gene type direction distance location
mchr1a mchr1a,LOC107704000,LOC107728182,LOC107733891,LOC107561025,LOC107659856 coding upstream 86352 10427591 ~ 10430538 (+)
rhot1b rhot1b,LOC107669542,LOC107710015,LOC107553301,LOC105892309,LOC103373013 coding upstream 375283 10130646 ~ 10141607 (+)
LOC122346392 NA coding upstream 386347 10126776 ~ 10130543 (+)
suz12b suz12,LOC107710018,LOC107553303,LOC107669539,LOC107591916 coding upstream 400609 10107180 ~ 10116281 (+)
rab11fip4b rab11fip4,LOC107710022,LOC107553307 coding upstream 443362 10056898 ~ 10073528 (+)
stx8 stx8,LOC107704006,LOC107555374,LOC107733906,LOC107569362,LOC107660464,LOC107757428 coding downstream 758 10523980 ~ 10578805 (+)
LOC122347357 LOC107733903,LOC107704004,LOC107555376,LOC107569359 coding downstream 315226 10838448 ~ 10858010 (+)
glulb glulb,LOC107555380,LOC107733907,LOC107704001,LOC107757425,LOC107660462,LOC107569358,LOC102795441,LOC105019150 coding downstream 377784 10901006 ~ 10904025 (+)
znf648 LOC107678353,LOC107555382,LOC107733900,LOC107719322,LOC107660466,LOC107564440 coding downstream 399446 10922668 ~ 10930433 (+)
gadd45ab gadd45ab,gadd45a,LOC107555372,LOC107678351,LOC107670797,LOC108272203 coding downstream 420530 10943752 ~ 10946264 (+)
G44225 NA non-coding upstream 72814 10434521 ~ 10444076 (+)
G44220 NA non-coding upstream 89303 10426411 ~ 10427587 (+)
G44215 NA non-coding upstream 102910 10411577 ~ 10413980 (+)
G44199 NA non-coding upstream 108120 10408531 ~ 10408770 (+)
G44190 NA non-coding upstream 144957 10371526 ~ 10371933 (+)
G44248 NA non-coding downstream 59127 10582349 ~ 10583681 (+)
G44252 ntn1a non-coding downstream 76526 10599748 ~ 10600064 (+)
LOC122346901 NA non-coding downstream 138898 10662120 ~ 10663689 (+)
G44297 NA non-coding downstream 468148 10991370 ~ 10991602 (+)
G44298 NA non-coding downstream 473186 10996408 ~ 10997516 (+)
atad5b LOC107578257,LOC107710017,LOC107669538 other upstream 393365 10116617 ~ 10123525 (+)
dgke dgke,LOC107669536,LOC107710025,LOC107710026,LOC107669537,LOC107553311,LOC107591925,LOC107701198 other upstream 476526 9979865 ~ 10040364 (+)
LOC122346828 mcrip1,LOC107710264,LOC107553315,LOC107710031,LOC107591941,LOC108424716 other upstream 568961 9944518 ~ 9947929 (+)
pecam1b NA other upstream 590633 9916050 ~ 9926257 (+)
G43962 rptor,LOC107728013,LOC107700860,LOC107553319 other upstream 705315 9786840 ~ 9811575 (+)
LOC122347096 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 other downstream 347156 10870378 ~ 10882899 (+)
pik3r6a zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC105903457 other downstream 359738 10882960 ~ 10892460 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other downstream 892051 11415273 ~ 11420330 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other downstream 1478925 12002147 ~ 12010539 (+)
G44588 NA other downstream 1564177 12087399 ~ 12092455 (+)

Expression


Co-expression Network