ntn1a (ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279)


Basic Information

Item Value
gene id ntn1a
gene name ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10578989 ~ 10835525 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU65650
AGAAAAGCTCTTGTACAGTGTAACATACTAAtctctctggttttgacccAGACCACTACAGGCTCTCAAACTGTCCCAGCGAATGCACAACAAAAGCTTTCTGTCCCTTTTTACTCTCTGTGGCCCaattcaaagataaaaaaaaaaaggtaatctAACAATTGCTAAAAAGAAGCTTTGTACGTTTCTAAAGTAGATCCCGTTCTATTCAACAGACACGAATAGACTACATTTGGCagaatcatcattattattattattattttcctgtttaagcCATATGCTGTGAATCATGCCACAActcctttacaaaaaaaaaacgaaatctGTACACATAAATTTAGgatctataaaaatgtaatagcaTGCTTGTACAaattattagcatgcatttacaattatttttgaacTTGGAATAAAACGGccatgtatatttttgtataagaCACGATGACTCTAAATACAAACAGCATTTCTTGCTCCATTTGATGCTCTGATTCACTTGTTTATAGCCCAGACATGGACGATGACGTCCTTTTGTTAAAACAGATCTTCAGTGTGACGAGTCCGCTGTATAAACAGGCCTTTCCTCGGAAGTCCTGGAAGTGTTGGTAGAACGGTGTGTATAGTTAGCATTTTTTCTTGTGCGTAAAACAGTATTTAGAAGTGTACGAATTACCTTTAACTAGTATTCATTAACTAGTATTTAGTTTTGTAAAGCAACGGCATCTCTCCTTAAACTTGTCCATGTCCATTTAGCATCTGTGAATGTAGGAATGCATGTACAGTAATGTTTCACTACAACAGAGAATTCTCTTCACTGTGAGAAACGctgctcatacacacacacacacacac
>XM_043241769.1
CCTCTACATGCGCGGAGATTTAAGGACCAGACAAGTAAAAGCGCGTGTCCAATACTCACGGAAAAAGAGAGCCAGAACGAGCTGAGATTGTTTTGAGACTTTTCTGAAGTGTTTGAGGGAGGTACAGTGATCGGTGTAGACATTTCTCCAGCTGCGATCTTCTTTCGATGCGAAAGCGTAATTATTGTCGGATCTTTCCGTAGCGGTTTAGCCTAAATACAGAAGTTTGCCCACATGCTGGAGTCCGATTTAGATTCGCATTAGTTTGTTCTTTGGCACCGGTGTCCTATCTGCTGTGGATTGATCACGCTCAGGTTGTCAACTGGTTTTCCATCCGCAAACAGTTGATAGCATCTTCTCGTTCGGACACGGCTGCGTTTCAGAACAGGAGAGACTGAGGAAGGCGCGGGATGATGTTGAGGGTCTCGGATGCTTTGGTCACTTTGGTGACTCTCTACTGTGTGGTCAAAGGCACCGTCGGCGGATACGGCATGAGCATGTTCGCCGCTCAGACCTCCCCACCGGACCCGTGCTACGACGAGAACGGTCACCCCAGAAGATGCATCCCCGATTTCGTCAACGCGGCGTTCGGGAAGGAAGTGCGCGCGTCCAGCACCTGCGGCAAAACACCGAGTCGGTACTGTGTGGTGACCGAGAAAGGGGACGAAAGGCACAGAAACTGCCACACGTGTGACGCGTCGGACCCAAAGAAATATCACCCACCTGCTTACCTAACCGACTTGAACAATCCTCACAATCTCACCTGCTGGCAGTCGGACAATTACATCCAGTATCCTCAAAATGTGACTTTAACATTGTCCCTGGGCAAGAAATTCGAGGTGACCTACGTGAGTTTGCAGTTTTGCTCCCCGCGACCAGAGTCCATGGCTATCTTTAAATCGATGGACTACGGAAAGTCCTGGGTGCCTTTCCAGTACTACTCGACCCAATGCAGAAAGATGTACAACAAGCCCAGCAAAGCCACGATCACTAAGCAAAACGAGCAAGAGGCCATCTGCACAGATTCTCACACCGACATGCACCCTCTCTCCGGGGGGCTGATAGCGTTCAGCACCCTGGACGGGCGACCCTCCGCGCACGACTTTGACAATTCACCCGTGCTTCAGGACTGGGTGACCGCCACTGACATTAAGGTCACTTTCAGCCGACTGCACACTTTCGGAGACGAAAATGAGGATGACTCGGAGCTGGCTAGAGATTCCTATTTTTACGCCGTGTCAGACCTGCAGGTCGGAGGCAGATGTAAGTGTAACGGACACGCGTCACGGTGCGTCAAAGACAGGGACGGAAACCTGGTGTGCGAGTGCAAGCACAATACAGCCGGACCGGAGTGTGACAGATGCAAACCTTTTCACTATGACCGACCCTGGCAGCGCGCAACCGCAAGAGAAGCCAACGAATGCGTCGCCTGCAACTGTAACCTCCATGCGAGGCGCTGTCGTTTCAACATGGAGCTTTATAAACTCTCCGGGAGGAAAAGCGGAGGAGTCTGCCTGAACTGCCGTCACAATACGGCGGGCCGCCACTGCCACTACTGCAAAGAGGGCTACTACAGAGACATGTCCAAGCCCATCTCTCACAGAAAGGCCTGCAAAGCCTGTGATTGCCATCCTGTGGGGGCCGCGGGCAAAACCTGTAACCAAACCACAGGCCAATGCCCCTGTAAAGACGGTGTGACGGGTATCACATGCAACCGTTGTGCTAAAGGCTACCAGCAGAGCCGATCTCCCATTGCCCCCTGCATAAAAATTCCCATTGCTCCACCAACCACCACCGCAAGCAGCACAGAGGAACCTTCGGACTGTGAATCCTACTGCAAGGCTTCTAAAGGCAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAAGATTACGCTGTTCAGGTCCACATCCTAAAGGCAGACAAAGCCGGCGAGTGGTGGAAGTTCACCGTCAACATCATCTCCGTCTACAAACAGGGAGAAAGCCGAATCCGCAGAGGAGATCAGTTTCTGTGGGTCAGAGCAAAGGACGTGGCCTGCAAGTGTCCAAAGATCAAGCCCGGCAAAAAGTACCTGCTGCTGGGCAATGATGAGGATTCCCCTGGACAGAGCGGGGTGGTGGCGGACAAGGGCAGTCTGGTCATTCAGTGGAGGGACACTTGGGCTCGAAGGCTCCGGAAGTTCCAGCAGCGGGAGAAGAAAGGAAAATGCAAGAAAGCATAGTgagggagaaaagaaaagaagtggCTATCAAGAGCCGGACAGAGAAACATAAGGGaaaggaagagaagaaaaagagggaCTAAACATCgctgctttgaataaaagcatgaagagaatattaacttttttttttctttttttttaaataggaacATGTGTGAAGGAGTTCACGatgcagttttcatttttttttggttttcttcaagATTTGTTTGCTGTTTGCCAATTTTGCACCTGTGTTCAGCATAAAGAAAggtattttatgttaaatggcTTTCAGATACATTTTGGACGGTTTCGGTCTGGTTGAGAATCAGATTAAGCcatatttaatattctaaaaCAACCCGGGGTCGAGGATTGGTACATTAAAAAccggacttttttttttttttttttttttagagcaaaataattaattcaaataaaaatagagcaTGCCTccttattacaaaaataaaatatcttcattagtaagttttgcatttaaaaattcatatgCTCTAActtatgcataatgcataacgGCATCCGAGATGACAACATTTCAGAGATTtcaaaattctgtttttttttaatatgatagATATCAAAACTAATTTGTTCCTCTTCTGCCAATTAAAAATCcgaaaacagtattttaaaaagtacgaCTTTGTAACAACCTCCATGCAGATCTCAcaattttaagtatatttgtgcatattatttttcctgagtattcatttaattaccGTTTCAATTTTCGTTGAGCGGTTTTTCTTTGAATGcagatgtataaaaaaaaaaaaaaaaaaaaaaaaggaacaacaCA
>XM_043241770.1
CCTCTACATGCGCGGAGATTTAAGGACCAGACAAGTAAAAGCGCGTGTCCAATACTCACGGAAAAAGAGAGCCAGAACGAGCTGAGATTGTTTTGAGACTTTTCTGAAGTGTTTGAGGGAGGTACAGTGATCGGTGTAGACATTTCTCCAGCTGCGATCTTCTTTCGATGCGAAAGCGTAATTATTGTCGGATCTTTCCGTAGCGGTTTAGCCTAAATACAGAAGTTTGCCCACATGCTGGAGTCCGATTTAGATTCGCATTAGTTTGTTCTTTGGCACCGGTGTCCTATCTGCTGTGGATTGATCACGCTCAGGTTGTCAACTGGTTTTCCATCCGCAAACAGTTGATAGCATCTTCTCGTTCGGACACGGCTGCGTTTCAGAACAGGAGAGACTGAGGAAGGCGCGGGATGATGTTGAGGGTCTCGGATGCTTTGGTCACTTTGGTGACTCTCTACTGTGTGGTCAAAGGCACCGTCGGCGGATACGGCATGAGCATGTTCGCCGCTCAGACCTCCCCACCGGACCCGTGCTACGACGAGAACGGTCACCCCAGAAGATGCATCCCCGATTTCGTCAACGCGGCGTTCGGGAAGGAAGTGCGCGCGTCCAGCACCTGCGGCAAAACACCGAGTCGGTACTGTGTGGTGACCGAGAAAGGGGACGAAAGGCACAGAAACTGCCACACGTGTGACGCGTCGGACCCAAAGAAATATCACCCACCTGCTTACCTAACCGACTTGAACAATCCTCACAATCTCACCTGCTGGCAGTCGGACAATTACATCCAGTATCCTCAAAATGTGACTTTAACATTGTCCCTGGGCAAGAAATTCGAGGTGACCTACGTGAGTTTGCAGTTTTGCTCCCCGCGACCAGAGTCCATGGCTATCTTTAAATCGATGGACTACGGAAAGTCCTGGGTGCCTTTCCAGTACTACTCGACCCAATGCAGAAAGATGTACAACAAGCCCAGCAAAGCCACGATCACTAAGCAAAACGAGCAAGAGGCCATCTGCACAGATTCTCACACCGACATGCACCCTCTCTCCGGGGGGCTGATAGCGTTCAGCACCCTGGACGGGCGACCCTCCGCGCACGACTTTGACAATTCACCCGTGCTTCAGGACTGGGTGACCGCCACTGACATTAAGGTCACTTTCAGCCGACTGCACACTTTCGGAGACGAAAATGAGGATGACTCGGAGCTGGCTAGAGATTCCTATTTTTACGCCGTGTCAGACCTGCAGGTCGGAGGCAGATGTAAGTGTAACGGACACGCGTCACGGTGCGTCAAAGACAGGGACGGAAACCTGGTGTGCGAGTGCAAGCACAATACAGCCGGACCGGAGTGTGACAGATGCAAACCTTTTCACTATGACCGACCCTGGCAGCGCGCAACCGCAAGAGAAGCCAACGAATGCGTCGCCTGCAACTGTAACCTCCATGCGAGGCGCTGTCGTTTCAACATGGAGCTTTATAAACTCTCCGGGAGGAAAAGCGGAGGAGTCTGCCTGAACTGCCGTCACAATACGGCGGGCCGCCACTGCCACTACTGCAAAGAGGGCTACTACAGAGACATGTCCAAGCCCATCTCTCACAGAAAGGCCTGCAAAGAAATTCCCATTGCTCCACCAACCACCACCGCAAGCAGCACAGAGGAACCTTCGGACTGTGAATCCTACTGCAAGGCTTCTAAAGGCAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAAGATTACGCTGTTCAGGTCCACATCCTAAAGGCAGACAAAGCCGGCGAGTGGTGGAAGTTCACCGTCAACATCATCTCCGTCTACAAACAGGGAGAAAGCCGAATCCGCAGAGGAGATCAGTTTCTGTGGGTCAGAGCAAAGGACGTGGCCTGCAAGTGTCCAAAGATCAAGCCCGGCAAAAAGTACCTGCTGCTGGGCAATGATGAGGATTCCCCTGGACAGAGCGGGGTGGTGGCGGACAAGGGCAGTCTGGTCATTCAGTGGAGGGACACTTGGGCTCGAAGGCTCCGGAAGTTCCAGCAGCGGGAGAAGAAAGGAAAATGCAAGAAAGCATAGTgagggagaaaagaaaagaagtggCTATCAAGAGCCGGACAGAGAAACATAAGGGaaaggaagagaagaaaaagagggaCTAAACATCgctgctttgaataaaagcatgaagagaatattaacttttttttttctttttttttaaataggaacATGTGTGAAGGAGTTCACGatgcagttttcatttttttttggttttcttcaagATTTGTTTGCTGTTTGCCAATTTTGCACCTGTGTTCAGCATAAAGAAAggtattttatgttaaatggcTTTCAGATACATTTTGGACGGTTTCGGTCTGGTTGAGAATCAGATTAAGCcatatttaatattctaaaaCAACCCGGGGTCGAGGATTGGTACATTAAAAAccggacttttttttttttttttttttttagagcaaaataattaattcaaataaaaatagagcaTGCCTccttattacaaaaataaaatatcttcattagtaagttttgcatttaaaaattcatatgCTCTAActtatgcataatgcataacgGCATCCGAGATGACAACATTTCAGAGATTtcaaaattctgtttttttttaatatgatagATATCAAAACTAATTTGTTCCTCTTCTGCCAATTAAAAATCcgaaaacagtattttaaaaagtacgaCTTTGTAACAACCTCCATGCAGATCTCAcaattttaagtatatttgtgcatattatttttcctgagtattcatttaattaccGTTTCAATTTTCGTTGAGCGGTTTTTCTTTGAATGcagatgtataaaaaaaaaaaaaaaaaaaaaaaaggaacaacaCA

Function

symbol description
ntn1a Acts upstream of or within several processes, including circulatory system development; closure of optic fissure; and neuron differentiation. Predicted to be located in extracellular region. Predicted to be active in basement membrane. Is expressed in several structures, including brain; head; optic cup; optic vesicle; and somite. Human ortholog(s) of this gene implicated in congenital mirror movement disorder. Orthologous to human NTN1 (netrin 1).

NR:

description
PREDICTED: netrin-1

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0016525 negative regulation of angiogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0071678 olfactory bulb axon guidance biological_process
GO:0021960 anterior commissure morphogenesis biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0048665 neuron fate specification biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K06843 NTN1; netrin 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU65650 False 858 lncRNA 0.36 1 10578989 10579846
XM_043241769.1 True 3039 mRNA 0.47 6 10579846 10835525
XM_043241770.1 False 2889 mRNA 0.46 5 10579846 10835525

Neighbor

gene id symbol gene type direction distance location
LOC122346769 LOC107733892,LOC107555367,LOC107703995 coding downstream 56293 10517118 ~ 10522696 (-)
cfap52 cfap52,LOC107757424,LOC107659863,LOC107703996 coding downstream 62025 10509922 ~ 10516964 (-)
grb2a grb2a,grb2,LOC107733915,LOC107728184,LOC107704009,LOC105012273,LOC107659857,LOC108441871 coding downstream 151579 10411701 ~ 10427410 (-)
mif4gda mif4gda,LOC107728181,LOC107561027,LOC107659858 coding downstream 167725 10408908 ~ 10411264 (-)
gga3a gga3,LOC107704010,LOC107573533,LOC107733910,LOC107659859 coding downstream 172532 10399345 ~ 10406457 (-)
sec16b sec16b coding upstream 95045 10930570 ~ 10943617 (-)
dr1 dr1,LOC107555385 coding upstream 149999 10985524 ~ 10988423 (-)
zgc:109982 LOC107678358,LOC106920129,LOC103368644,LOC103139842,LOC107733899,LOC105940069,LOC103463988 coding upstream 155450 10990975 ~ 10996060 (-)
scinla scinla,LOC107730699,LOC107675434,LOC107564434,LOC107678357,LOC107733908 coding upstream 160872 10996397 ~ 11005424 (-)
si:ch73-389b16.1 si:ch73-389b16.1 coding upstream 175473 11010998 ~ 11013344 (-)
G44213 NA non-coding downstream 190547 10388044 ~ 10388442 (-)
G44210 NA non-coding downstream 202411 10376140 ~ 10376578 (-)
G44209 NA non-coding downstream 205421 10373170 ~ 10373568 (-)
G44208 NA non-coding downstream 206137 10372640 ~ 10372852 (-)
G44168 NA non-coding downstream 336480 10242210 ~ 10242509 (-)
G44447 NA non-coding upstream 396926 11232451 ~ 11232784 (-)
G44449 NA non-coding upstream 398965 11234490 ~ 11234694 (-)
G44450 NA non-coding upstream 399350 11234875 ~ 11235096 (-)
G44452 NA non-coding upstream 402437 11237962 ~ 11238198 (-)
G44457 NA non-coding upstream 403594 11239119 ~ 11239464 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 69986 10434204 ~ 10509003 (-)
LOC122347367 NA other downstream 220139 10355877 ~ 10358850 (-)
tnrc6c2 LOC107701838,LOC107566423,LOC107754870,LOC107591908,LOC107718711,LOC107698681 other downstream 335564 10204617 ~ 10243425 (-)
cd7al LOC107710016,LOC107553302,LOC107669545,LOC107698686,LOC107710292,LOC107591915,LOC107553301,LOC107710015 other downstream 433821 10138905 ~ 10145168 (-)
c6h17orf67 cunh17orf67,LOC107591943,LOC107669532,LOC107701203,LOC103044666 other downstream 551309 10025453 ~ 10027680 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other upstream 113167 10948692 ~ 10985132 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other upstream 219510 11055035 ~ 11069466 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 1690231 12525756 ~ 12897718 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 2819735 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 2882677 13718202 ~ 13785903 (-)

Expression


Co-expression Network